CaUC08G150340 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC08G150340
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr08: 21857074 .. 21860852 (+)
RNA-Seq ExpressionCaUC08G150340
SyntenyCaUC08G150340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAATGAATATATAAAATAAAGTCGAGATGAACATCAATTTTCAATATTGAACTTTTAAAAGGAAATTTTCGCTTCAAACAGCAAATCTATTCTACGAGCTACACAGGACTAGACCGACCGACCTCAAGTTTTACGAACTCAGTTTTATCTTCGACCACTAATTTTTTGTTCTTTGTTTCTCAGTTCTATATTCTTCCTTGTTCGTCGCAGATTGCCGGACCTGCCTATTGTTTTCATTTAAAAGTGACGCAAATCACAGAAATTCAACAAAAAAATCCGTGATATGGGTAAGAAAATGCAATTCAAGAAGCTAATTAGACATCATACCGGTAGTAATTTGCTTCAGAAGGGCAGATCTTAGGGTTTTTCCCTTTATTCGAATCTTTATCAATAATCGAAATGCATCTTGCTATCTGTTGTTGGACGGGAAACGCTCGATTGTTAACCAGAATGTTCCGATTCTTCTTCCTGTTACCGATTGTACTCTCTGCCGAACGCTAGAATATGAAGGTAATCCTTTTTAAACTGATAATGGAGTATTTGGCTCTACTTTATTTTCATTCTCCCACCTTCATTATTTGCCTGTCTCTTTTATAGACTTTCCCAGTCCCACTACTCTCTTTATCGTGTTCTCTCTTTCCTCCTGCCATTTTTATCCTTAATTGCGATTCTTAAATATGGATTTGACCATCTAAACAGTTGAAACTTTGAAAGCAAAATCATCAGACGAACACAACCCAACTAATGAAAAATATCAAACTCAACCCGTAGTCGAATTCAATGTCTATGAACTTCATGACAAGTAATTCAGATACAACTTCAATCCCAGCATGTGAAGAATTAGACGTTAGAATCTTGTTGATTAAATTACATCATGAATGAGAAAGCTGTCGTTAGATCTAGGGATTAAAAGTCTGTAAACAATAGATCCTTTACTAGGCATATTCATTCATTCCCATAATCCATGATGGTGATGGCAGCGTCCTAATTTTTTGACTCATTGGAATAAAAAATGATGCCATGCAGATGCAGTTTGTGAAGAGTAGCATTTCAAGTTTGGAATTACTTCGTAGATGCTTCAAGTACAATACATACTTTTATATATATTTTAGACCATCTCTCAATTATTTAATCTCAGTCTACCTCTGCTAAGCATAAAGAGAGAATCCACAAGTACAGATTTATATAACGATCTGAAGTCAAACTCTCTCCATCTGTCAATCAATTAATTAATGTCAGTCTCTTGCTCATACAAAACTTAAGATGCAACATCGACTCTTGGGCATTGAAAAAAGATGCCCAAGAATAATTATATATAAACCTTTTCTTGTATGTGTATCCTCCTCGGATTTTCAATTTCATCTGCATTACCATTTGACATCTTTCCTCTGTGAAAAATTAAAAACGTAAAAACATAGGACTCATGCACACACCTCCTCACTAAACCTAATCATGGCATGGATCTGCATCTTGCATACATTCTTGAAATAGGAAAGCCTAAGTATTGGTTGTAATGGGTCAGACAGACAAGTTATACATTTTCAATACCCATCACCTATAGTCTAGACAAGTACTCCTCTTAGATGTACACATAGTAATGCTCGATCAATCCGGCGTCTTAGGGATAAGAGGCTGGAAGGTATATATTAAAGCCTTCCTTGCAATGAGAACAGATAGCACGCACCTTAGCACCAGGTGAATTTTTTAAGCATCATTCCATCCTGCAAGACAGTTCTGCTTGAACCGTGATGGTGATTCAGTCGCTGTGCCTCATCATCTGAAGTCCCATCTACTGAAACCAAAGTTTGGCTGATTGCCCCAAACGCAGGTCAGATGTCTCACGTCTGAACCGAACTCTTCATCATAAAAAATTATCCTTCACTGCCTTAATCTTTATCTAATATTTTCATATAGTTCTCTACCAGGAAAAAGAGAATTCCAACCATTTTCTTTTCTTGAGAGAGAGGGAGTGGCCTTTATATGGTCATACACTAATATGCATTATATTCCATGAAGCAAAACTCCTCCATCAAAATTGTCTGAACTTAAGACATTTGCAAGGTCGTTGCATGATTCAAGGTGCTGACTCTTGATGATATAGGAATGTAGCTGTCTTCTCGTTTTCAAATCTTCCCTTTCAGCTAAGGCAGGGAGAAGTATCGAAAAGGTAACTGAACTTGGTTTTATGCCTTCTTCTAGCATTTGACAGAAGAGTTCAACTGCTACTTTGTGCTGCATTATTCTCATACGACCTGCAATGAAGGCATTCCAACAAACTACATTCCTGTTCTTTATTCTGCTAAATACTTGAATTGCCGAATCAATATTCTCACACTTTGCGTACATGTCAATTAGAGCACTTGAAATGAAGTGGTTGTCTTCAAAAGAATTCCTCAACACATATCCATGGATTTCCTTCCCTTTGTGCAATAAACTCAAGCTAGCACAAGCAGCCAGAGCAGCAGTTATAGTGACGGTATTTGGTCTGAACGTCAAAGTAATCACCTTATTAAGAAGGCAACCACTGCACAGCATGGTCTGGAATAATTCCAGAGCTTCATAACTTAACCCAGATTGTTGAAATCCAGATACTAAAACATTTAAAGATACAACATTGATTGCCAGATCTTTCTGTAACATCTCAGATAGCAACTTAAATGCTTCAACTTTCTGCCCATTTTTTGCATGTCCAGCTAGCAGTGTGTTGTAGGTTACAACATCAGGTTTTAGTCCATGATGCTGCATTGATCTAAAACGTTCTAATGCCTGGCTAGTTTTTCCCTGATTCACGTAAGATGCTATAATTTCATTCCACAATGTAATGTTTTTCTTCTCTGCTTTGGCAAAAACTTCTTCAGCATAATCATCTTGTCCACATTTCGAATACATATCAACTAATGATCCTTTGACGTAAATGTTCGTAGACAGCTCGCACTTAAGAGCATATGCATGAATAGCCCTGCCTAAACCTAGATCTCTCAACCCTGCACAAGCTGGTAGTATACTCGCTACAGTAACAGAATTTGGATTCTCAGGAAACAACAGCATAGTAATAAATACATCCAAAGCATCTTTGAAATAGCCATTTTGAACACAACCTGATATGATTCCGTTCCATGAATTAACCCTTGGGCTCAATCCTTCTTCTTGCATGGCTTCCAAGTATGTGAGAGCAGTGTCAGTCTCTCCATATCGAGCAAACCCGGAGACCAGTGCATTCCAAGATACCAAATCAGGCTTCAAACCACTAGACCGCATGGAGTGAAACACTTCCATCGCCTCATCCAAAAGACCTTCTTCGATGTAGGCTGACACAAGCGCAGTCCATGAAACCACATCCTTTTCACTCATCGAATCAAAAACATAGATCGAAAATCTCAAATCCCCACAATTACTATAGAAATCCATAAGAGCATTCCCAATAAAAATATCAGAGACCAGCCTCTTCCTAATGGCATACCCATGAACCATTTTACCAGTCTTCACCATTTGTCTTCTGGAACATGCTTTAAGAATCGTGGGCACTAAGTATTTACCAGGCAGTATGCCCTCATCAACCATCGATCTGAATGCCGCAAAGAGCTCATTCCACTTTTCTGACCGACAGTACGCCCTAATCAAAGCTGCATATGCTGGCAGCGTTCTCTCAGGAATTTCATCGAACAGCTTACGATCACTATCCACGCACTTCACATCCTTGGCATACAACTTTGCCAGCTTCTCTCCGAACAAATTATCAACTCGGCGATCATTTAATTTAACAACCGGGGCATTATGA

mRNA sequence

TTAATGAATATATAAAATAAAGTCGAGATGAACATCAATTTTCAATATTGAACTTTTAAAAGGAAATTTTCGCTTCAAACAGCAAATCTATTCTACGAGCTACACAGGACTAGACCGACCGACCTCAAGTTTTACGAACTCAGTTTTATCTTCGACCACTAATTTTTTGTTCTTTGTTTCTCAGTTCTATATTCTTCCTTGTTCGTCGCAGATTGCCGGACCTGCCTATTGTTTTCATTTAAAAGTGACGCAAATCACAGAAATTCAACAAAAAAATCCGTGATATGGATCTTAGGGTTTTTCCCTTTATTCGAATCTTTATCAATAATCGAAATGCATCTTGCTATCTGTTGTTGGACGGGAAACGCTCGATTGTTAACCAGAATGTTCCGATTCTTCTTCCTGTTACCGATTGTACTCTCTGCCGAACGCTAGAATATGAAGTTGAAACTTTGAAAGCAAAATCATCAGACGAACACAACCCAACTAATGAAAAATATCAAACTCAACCCGTAGTCGAATTCAATGTCTATGAACTTCATGACAAAGCACTTGAAATGAAGTGGTTGTCTTCAAAAGAATTCCTCAACACATATCCATGGATTTCCTTCCCTTTGTGCAATAAACTCAAGCTAGCACAAGCAGCCAGAGCAGCAGTTATAGTGACGTATGTGAGAGCAGTGTCAGTCTCTCCATATCGAGCAAACCCGGAGACCAGTGCATTCCAAGATACCAAATCAGGCTTCAAACCACTAGACCGCATGGAAATCGTGGGCACTAAGTATTTACCAGGCAGTATGCCCTCATCAACCATCGATCTGAATGCCGCAAAGAGCTCATTCCACTTTTCTGACCGACAGTACGCCCTAATCAAAGCTGCATATGCTGGCAGCGTTCTCTCAGGAATTTCATCGAACAGCTTACGATCACTATCCACGCACTTCACATCCTTGGCATACAACTTTGCCAGCTTCTCTCCGAACAAATTATCAACTCGGCGATCATTTAATTTAACAACCGGGGCATTATGA

Coding sequence (CDS)

ATGGATCTTAGGGTTTTTCCCTTTATTCGAATCTTTATCAATAATCGAAATGCATCTTGCTATCTGTTGTTGGACGGGAAACGCTCGATTGTTAACCAGAATGTTCCGATTCTTCTTCCTGTTACCGATTGTACTCTCTGCCGAACGCTAGAATATGAAGTTGAAACTTTGAAAGCAAAATCATCAGACGAACACAACCCAACTAATGAAAAATATCAAACTCAACCCGTAGTCGAATTCAATGTCTATGAACTTCATGACAAAGCACTTGAAATGAAGTGGTTGTCTTCAAAAGAATTCCTCAACACATATCCATGGATTTCCTTCCCTTTGTGCAATAAACTCAAGCTAGCACAAGCAGCCAGAGCAGCAGTTATAGTGACGTATGTGAGAGCAGTGTCAGTCTCTCCATATCGAGCAAACCCGGAGACCAGTGCATTCCAAGATACCAAATCAGGCTTCAAACCACTAGACCGCATGGAAATCGTGGGCACTAAGTATTTACCAGGCAGTATGCCCTCATCAACCATCGATCTGAATGCCGCAAAGAGCTCATTCCACTTTTCTGACCGACAGTACGCCCTAATCAAAGCTGCATATGCTGGCAGCGTTCTCTCAGGAATTTCATCGAACAGCTTACGATCACTATCCACGCACTTCACATCCTTGGCATACAACTTTGCCAGCTTCTCTCCGAACAAATTATCAACTCGGCGATCATTTAATTTAACAACCGGGGCATTATGA

Protein sequence

MDLRVFPFIRIFINNRNASCYLLLDGKRSIVNQNVPILLPVTDCTLCRTLEYEVETLKAKSSDEHNPTNEKYQTQPVVEFNVYELHDKALEMKWLSSKEFLNTYPWISFPLCNKLKLAQAARAAVIVTYVRAVSVSPYRANPETSAFQDTKSGFKPLDRMEIVGTKYLPGSMPSSTIDLNAAKSSFHFSDRQYALIKAAYAGSVLSGISSNSLRSLSTHFTSLAYNFASFSPNKLSTRRSFNLTTGAL
Homology
[Close]
BLAST of CaUC08G150340 vs. NCBI nr
Match: KGN47750.1 (hypothetical protein Csa_003497 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-09
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 41  VTDCTLCRTLEYEVETLKAKSSDEHNPTNEKYQTQPVVEFNVYELHDKAL 91
           VTDCT CR LE+EVETL+ K S+E NPT+E  QT+ VVEFNVYELHDK L
Sbjct: 61  VTDCTPCRPLEFEVETLRGKLSNEPNPTSENGQTEYVVEFNVYELHDKQL 110

[Close]
BLAST of CaUC08G150340 vs. ExPASy TrEMBL
Match: A0A0A0KDF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G399750 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 41  VTDCTLCRTLEYEVETLKAKSSDEHNPTNEKYQTQPVVEFNVYELHDKAL 91
           VTDCT CR LE+EVETL+ K S+E NPT+E  QT+ VVEFNVYELHDK L
Sbjct: 61  VTDCTPCRPLEFEVETLRGKLSNEPNPTSENGQTEYVVEFNVYELHDKQL 110

The following BLAST results are available for this feature:
BLAST of CaUC08G150340 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47750.12.8e-0972.00hypothetical protein Csa_003497 [Cucumis sativus][more]
BLAST of CaUC08G150340 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC08G150340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDF81.3e-0972.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G399750 PE=4 SV=1[more]
BLAST of CaUC08G150340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC08G150340.1CaUC08G150340.1mRNA