CaUC08G148360 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC08G148360
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Pectin lyase-like superfamily protein
Location	Ciama_Chr08: 19681453 .. 19683038 (+)
RNA-Seq Expression	CaUC08G148360
Synteny	CaUC08G148360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTGTTGGGGTTTAAGCCATCTTATGTAAGTGCTCAAATCGAAGTTGGTCACTGCGTTTATGCCTCTGTATTCTATAGCTGCTATGTCGTATGCCCTTGCTGCCTCCTCTTGTGTACCTACACATTATTATGTGTTATGTGTTTTTCAACTTTTTAAGAGCTATTGTTCTGAAAACATCAACATTAGTTTCTTGTTTCATAATCATTTTGGCCATGTTTGATAACCATTTCGGTCTAGTTCGGTAACCATTTCGTTTTTTAGTTTTAGGTTTTTGAAAATTAAGATTATTTATTATTATTATTATTATTATTATTAATTACTATTTTTTGGAATGTTTTTTTGCATCTTTCTTAAGTGCAAGAGTTGAATTCTTAGCTAAATTCTAAAAACAAAAACAAAATTTTAATTTTTAGCTTAGTTTTTGAAAATATTGGTAAAAAGTAGATAACAAAAGCAAGAAATTTAAAGGTACTAAGAGTGTTTATGGGCTTGTTTTTTACTAATATTTTCATATTTCCTAGATAAACGTTTGAATTCTAAGTCAATTTTCAAAAACAAGAATATGTTTTAGAAAACTACATATTTGTTTTTTTGAGTTTTCAAAATGTGACCTTGATTTTGAAAAATTTTGAAAGTACTCTTAAAATCTAGACAACATAACCTATAAACTAATAGATGGTAGCTACTAACCTAAAATCCAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAACAAAGTCGATTTATAATTTTTAAATTAAAGTGATAAAACCATGTCTTATGTTCTCACCTTTCAGAGTCCATCAAAAGTCAAGATTAGTAAGGTGAGTTTCAAGAATATCAGAGGTACTTCAGGTAATGCGCTTGCAGTAAAACTTGCTTGTAGTTTTGATCATCCGTGTGAAGGTGTAGAGCTAGCTGACATTGACCTCACATATAGTGGAAATGAAGGGCCAATTACATCTGAATGTATAAATGTGAAGCCCACCATTTCTGGAAAGCAAAACCCTCCTGCTTGTTCTTCTCTTTCTCCTAATGCAACTGCATCAGCTTAA

mRNA sequence

ATGGTGTTGTTGGGGTTTAAGCCATCTTATGTAAGTGCTCAAATCGAAGTTGGTCACTGCGTTTATGCCTCTGTATTCTATAGCTGCTATGTCAGTCCATCAAAAGTCAAGATTAGTAAGGTGAGTTTCAAGAATATCAGAGGTACTTCAGGTAATGCGCTTGCAGTAAAACTTGCTTGTAGTTTTGATCATCCGTGTGAAGGTGTAGAGCTAGCTGACATTGACCTCACATATAGTGGAAATGAAGGGCCAATTACATCTGAATGTATAAATGTGAAGCCCACCATTTCTGGAAAGCAAAACCCTCCTGCTTGTTCTTCTCTTTCTCCTAATGCAACTGCATCAGCTTAA

Coding sequence (CDS)

ATGGTGTTGTTGGGGTTTAAGCCATCTTATGTAAGTGCTCAAATCGAAGTTGGTCACTGCGTTTATGCCTCTGTATTCTATAGCTGCTATGTCAGTCCATCAAAAGTCAAGATTAGTAAGGTGAGTTTCAAGAATATCAGAGGTACTTCAGGTAATGCGCTTGCAGTAAAACTTGCTTGTAGTTTTGATCATCCGTGTGAAGGTGTAGAGCTAGCTGACATTGACCTCACATATAGTGGAAATGAAGGGCCAATTACATCTGAATGTATAAATGTGAAGCCCACCATTTCTGGAAAGCAAAACCCTCCTGCTTGTTCTTCTCTTTCTCCTAATGCAACTGCATCAGCTTAA

Protein sequence

MVLLGFKPSYVSAQIEVGHCVYASVFYSCYVSPSKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECINVKPTISGKQNPPACSSLSPNATASA

Homology

[Close]

BLAST of CaUC08G148360 vs. NCBI nr
Match: KAE8648971.1 (hypothetical protein Csa_008488 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 3.6e-28
Identity = 67/84 (79.76%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 33  PSKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECINV 92
           PSKVKISKVSFKNIRGTSGNA AV L CS  +PCEGVELADIDLTY+GNEGPITS C NV
Sbjct: 178 PSKVKISKVSFKNIRGTSGNAQAVTLVCSSSNPCEGVELADIDLTYTGNEGPITSVCANV 237

Query: 93  KPTISGKQNPPACSSLSPNATASA 117
           KPTI+GKQNPP CS L+P A + A
Sbjct: 238 KPTITGKQNPPICSPLAPKAQSPA 261

[Close]

BLAST of CaUC08G148360 vs. NCBI nr
Match: XP_022150984.1 (exopolygalacturonase-like [Momordica charantia])

HSP 1 Score: 135.2 bits (339), Expect = 3.6e-28
Identity = 65/81 (80.25%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 33  PSKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECINV 92
           PSKVKISKVSFKNIRG+S NALAVK+ CS D PCEGVE+ADIDLTY+G+EGPITS+C NV
Sbjct: 323 PSKVKISKVSFKNIRGSSANALAVKIICSSDFPCEGVEIADIDLTYNGSEGPITSQCSNV 382

Query: 93  KPTISGKQNPPACSSLSPNAT 114
           KP ISGKQNPPACSS++P A+
Sbjct: 383 KPIISGKQNPPACSSVAPIAS 403

[Close]

BLAST of CaUC08G148360 vs. NCBI nr
Match: XP_031741217.1 (LOW QUALITY PROTEIN: exopolygalacturonase [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 3.6e-28
Identity = 67/84 (79.76%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 33  PSKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECINV 92
           PSKVKISKVSFKNIRGTSGNA AV L CS  +PCEGVELADIDLTY+GNEGPITS C NV
Sbjct: 369 PSKVKISKVSFKNIRGTSGNAQAVTLVCSSSNPCEGVELADIDLTYTGNEGPITSVCANV 428

Query: 93  KPTISGKQNPPACSSLSPNATASA 117
           KPTI+GKQNPP CS L+P A + A
Sbjct: 429 KPTITGKQNPPICSPLAPKAQSPA 452

[Close]

BLAST of CaUC08G148360 vs. NCBI nr
Match: XP_008459709.2 (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 5.2e-27
Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 33  PSKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECINV 92
           PSKVKISKVSFKNIRGTSGNA AV L CS  +PC+GVELADIDLTYSG+EGPITS C NV
Sbjct: 314 PSKVKISKVSFKNIRGTSGNAAAVTLVCSSSNPCDGVELADIDLTYSGSEGPITSRCANV 373

Query: 93  KPTISGKQNPPACSSLSPNATASA 117
           KPT+SGKQNPPAC+S +   + SA
Sbjct: 374 KPTVSGKQNPPACTSPATPKSLSA 397

[Close]

BLAST of CaUC08G148360 vs. NCBI nr
Match: KAA0039364.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK00547.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 5.2e-27
Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 33  PSKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECINV 92
           PSKVKISKVSFKNIRGTSGNA AV L CS  +PC+GVELADIDLTYSG+EGPITS C NV
Sbjct: 366 PSKVKISKVSFKNIRGTSGNAAAVTLVCSSSNPCDGVELADIDLTYSGSEGPITSRCANV 425

Query: 93  KPTISGKQNPPACSSLSPNATASA 117
           KPT+SGKQNPPAC+S +   + SA
Sbjct: 426 KPTVSGKQNPPACTSPATPKSLSA 449

[Close]

BLAST of CaUC08G148360 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-21
Identity = 57/99 (57.58%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 15  IEVGHCVYASVFYSCYVS-PSKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELAD 74
           I+ G+C Y      C    PS VK+SK+SFKNI+GTS    AVKL CS   PC GVELAD
Sbjct: 267 IDQGYCPY----NQCTAEVPSSVKLSKISFKNIKGTSTTKEAVKLVCSKSFPCNGVELAD 326

Query: 75  IDLTYSGNEGPITSECINVKPTISGKQNPPACSSLSPNA 113
           IDLTYSG  GP TS C N+KPTI GKQ P  CS  +  A
Sbjct: 327 IDLTYSGKGGPATSVCENIKPTIKGKQIPAICSGSAAKA 361

[Close]

BLAST of CaUC08G148360 vs. ExPASy Swiss-Prot
Match: Q05967 (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-19
Identity = 46/81 (56.79%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 33  PSKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECINV 92
           PS+VKISKVSF+NI+GTS    AV L  S   PCEG+E+ DID+TYSG EGP  S C N+
Sbjct: 316 PSQVKISKVSFQNIKGTSRTQDAVSLLRSKGVPCEGIEVGDIDITYSGKEGPAKSSCENI 375

Query: 93  KPTISGKQNPPACSSLSPNAT 114
           KP++ GKQNPP C++ + +++
Sbjct: 376 KPSLKGKQNPPVCTASAASSS 396

[Close]

BLAST of CaUC08G148360 vs. ExPASy Swiss-Prot
Match: W8P8Q3 (Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 PE=1 SV=3)

HSP 1 Score: 92.4 bits (228), Expect = 3.5e-18
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 32  SPSKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECIN 91
           +PSKVK+SK+SFKN+ G + +A  VKL CS   PC+GVELADIDLT+ G  G   S+C N
Sbjct: 321 TPSKVKLSKISFKNVHGAAKSAEVVKLLCSSAVPCDGVELADIDLTFPG--GAAVSQCKN 380

Query: 92  VKPTISGKQNPPACSS 108
           VKP ++GKQNP AC +
Sbjct: 381 VKPIVTGKQNPVACGA 394

[Close]

BLAST of CaUC08G148360 vs. ExPASy Swiss-Prot
Match: P35337 (Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-17
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 33  PSKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECINV 92
           PS +K+  ++F+NIRGTS N  AVKL CS  HPCE VE+ DI++ Y+G +GP T EC NV
Sbjct: 314 PSTIKLVDITFRNIRGTSENKDAVKLLCSKGHPCENVEIGDINIEYTGPDGPPTFECTNV 373

Query: 93  KPTISGKQNPPAC 106
            P + G QNP AC
Sbjct: 374 TPKLVGAQNPKAC 386

[Close]

BLAST of CaUC08G148360 vs. ExPASy Swiss-Prot
Match: Q39786 (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.1e-17
Identity = 48/84 (57.14%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 34  SKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECINVK 93
           SKVK+S +SFKNIRGTS    A+K  CS   PC+ VELADID+ ++G E P TS+C+NVK
Sbjct: 325 SKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIKHNGAE-PATSQCLNVK 384

Query: 94  PTISGKQNPPACSS---LSPNATA 115
           P  SGK NP  CS     +P+ATA
Sbjct: 385 PITSGKLNPIPCSGPVPKTPSATA 407

[Close]

BLAST of CaUC08G148360 vs. ExPASy TrEMBL
Match: A0A6J1DBN7 (exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111019009 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.8e-28
Identity = 65/81 (80.25%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 33  PSKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECINV 92
           PSKVKISKVSFKNIRG+S NALAVK+ CS D PCEGVE+ADIDLTY+G+EGPITS+C NV
Sbjct: 323 PSKVKISKVSFKNIRGSSANALAVKIICSSDFPCEGVEIADIDLTYNGSEGPITSQCSNV 382

Query: 93  KPTISGKQNPPACSSLSPNAT 114
           KP ISGKQNPPACSS++P A+
Sbjct: 383 KPIISGKQNPPACSSVAPIAS 403

[Close]

BLAST of CaUC08G148360 vs. ExPASy TrEMBL
Match: A0A5A7T7B3 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001590 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.5e-27
Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 33  PSKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECINV 92
           PSKVKISKVSFKNIRGTSGNA AV L CS  +PC+GVELADIDLTYSG+EGPITS C NV
Sbjct: 366 PSKVKISKVSFKNIRGTSGNAAAVTLVCSSSNPCDGVELADIDLTYSGSEGPITSRCANV 425

Query: 93  KPTISGKQNPPACSSLSPNATASA 117
           KPT+SGKQNPPAC+S +   + SA
Sbjct: 426 KPTVSGKQNPPACTSPATPKSLSA 449

[Close]

BLAST of CaUC08G148360 vs. ExPASy TrEMBL
Match: A0A1S3CC08 (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103498752 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.5e-27
Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 33  PSKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECINV 92
           PSKVKISKVSFKNIRGTSGNA AV L CS  +PC+GVELADIDLTYSG+EGPITS C NV
Sbjct: 314 PSKVKISKVSFKNIRGTSGNAAAVTLVCSSSNPCDGVELADIDLTYSGSEGPITSRCANV 373

Query: 93  KPTISGKQNPPACSSLSPNATASA 117
           KPT+SGKQNPPAC+S +   + SA
Sbjct: 374 KPTVSGKQNPPACTSPATPKSLSA 397

[Close]

BLAST of CaUC08G148360 vs. ExPASy TrEMBL
Match: A0A6J1DUC6 (exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111024096 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.8e-26
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 32  SPSKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECIN 91
           SPSKVKISKVSFKN+RG+S NALAVKL CS + PCE VE+ADIDLTY+GNEGPI+S+C N
Sbjct: 318 SPSKVKISKVSFKNVRGSSANALAVKLVCSAEVPCEDVEVADIDLTYNGNEGPISSQCKN 377

Query: 92  VKPTISGKQNPPACSSLSPNA 113
           VKP ISGKQNP ACSS +P A
Sbjct: 378 VKPIISGKQNPRACSSPAPPA 398

[Close]

BLAST of CaUC08G148360 vs. ExPASy TrEMBL
Match: A0A6J1I9Y3 (exopolygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111472545 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.1e-25
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 33  PSKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECINV 92
           PS +KISKVSFKNIRGTS   +AVKL CS  HPCE VE+ADIDLTYSG EGPI SEC NV
Sbjct: 321 PSTIKISKVSFKNIRGTSSTPVAVKLVCSKSHPCEDVEIADIDLTYSGKEGPIVSECANV 380

Query: 93  KPTISGKQNPPACSSLSPNAT 114
           KPTISGKQNPP C+  +P  T
Sbjct: 381 KPTISGKQNPPICAKPAPPET 401

[Close]

BLAST of CaUC08G148360 vs. TAIR 10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 90.9 bits (224), Expect = 7.3e-19
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 34  SKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECINVK 93
           S +K+  +SFKNIRGTSGN  AVKL CS  +PC+ VE+ DID+ Y+G +GP T  C NV 
Sbjct: 315 STIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVEIGDIDIKYNGADGPATFHCSNVS 374

Query: 94  PTISGKQNPPACSS 108
           P I G Q+P ACS+
Sbjct: 375 PKILGSQSPKACSA 388

[Close]

BLAST of CaUC08G148360 vs. TAIR 10
Match: AT5G48140.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-18
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 33  PSKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECINV 92
           PS +K++ +SFK IRGTSGN  AVKL CS  +PC+ VE+ D+++ Y+G +GP T +C NV
Sbjct: 314 PSTIKLANISFKKIRGTSGNKDAVKLLCSKGYPCQNVEVGDVNIQYTGADGPATFQCSNV 373

Query: 93  KPTISGKQNPPACSS 108
            P + G Q P ACSS
Sbjct: 374 SPKLVGTQIPKACSS 388

[Close]

BLAST of CaUC08G148360 vs. TAIR 10
Match: AT3G07840.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 89.0 bits (219), Expect = 2.8e-18
Identity = 45/83 (54.22%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 33  PSKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECINV 92
           PS +K+  +SFKNIRGTSGN  AVKL CS  HPC  VE+ +I+L Y G +GP T  C NV
Sbjct: 315 PSTIKLVDISFKNIRGTSGNKDAVKLLCSKAHPCANVEIGNINLEYKGADGPPTFMCSNV 374

Query: 93  KPTISGKQNPPACSSLSPNATAS 116
            P + G QNP ACS+     TA+
Sbjct: 375 SPKLVGTQNPKACSAGPTPKTAA 397

[Close]

BLAST of CaUC08G148360 vs. TAIR 10
Match: AT3G14040.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-17
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 33  PSKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECINV 92
           PSKVK+S V+ KNI+GTS   +AVKL CS   PC  + L+DI+L ++G EGP  S C N+
Sbjct: 365 PSKVKLSDVTIKNIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSNI 424

Query: 93  KPTISGKQNPPACSSLS 110
           KP +SGK  P AC+ ++
Sbjct: 425 KPILSGKLVPAACTEVA 441

[Close]

BLAST of CaUC08G148360 vs. TAIR 10
Match: AT3G07830.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-16
Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 34  SKVKISKVSFKNIRGTSGNALAVKLACSFDHPCEGVELADIDLTYSGNEGPITSECINVK 93
           S +K++ +SF+ IRGTSGN  AVKL CS  +PCE V++ DI++ Y+G +GP T  C NV+
Sbjct: 316 SSIKLANISFRRIRGTSGNKDAVKLLCSKGYPCENVQVGDINIQYTGADGPATFMCSNVR 375

Query: 94  PTISGKQNPPACSS 108
           P + G Q P AC++
Sbjct: 376 PKLVGTQFPKACNT 389

The following BLAST results are available for this feature:

BLAST of CaUC08G148360 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648971.1	3.6e-28	79.76	hypothetical protein Csa_008488 [Cucumis sativus]	[more]
XP_022150984.1	3.6e-28	80.25	exopolygalacturonase-like [Momordica charantia]	[more]
XP_031741217.1	3.6e-28	79.76	LOW QUALITY PROTEIN: exopolygalacturonase [Cucumis sativus]	[more]
XP_008459709.2	5.2e-27	77.38	PREDICTED: exopolygalacturonase-like [Cucumis melo]	[more]
KAA0039364.1	5.2e-27	77.38	exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK00547.1 exopolygalactur...	[more]

BLAST of CaUC08G148360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P24548	1.2e-21	57.58	Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1	[more]
Q05967	1.1e-19	56.79	Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1	[more]
W8P8Q3	3.5e-18	59.21	Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 P...	[more]
P35337	1.8e-17	56.16	Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1	[more]
Q39786	5.1e-17	57.14	Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1	[more]

BLAST of CaUC08G148360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBN7	1.8e-28	80.25	exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111019009 PE=3 SV...	[more]
A0A5A7T7B3	2.5e-27	77.38	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CC08	2.5e-27	77.38	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103498752 PE=3 SV=1	[more]
A0A6J1DUC6	4.8e-26	77.78	exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111024096 PE=3 SV...	[more]
A0A6J1I9Y3	3.1e-25	74.07	exopolygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111472545 PE=3 SV=1	[more]

BLAST of CaUC08G148360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07820.1	7.3e-19	56.76	Pectin lyase-like superfamily protein	[more]
AT5G48140.1	2.1e-18	53.33	Pectin lyase-like superfamily protein	[more]
AT3G07840.1	2.8e-18	54.22	Pectin lyase-like superfamily protein	[more]
AT3G14040.1	1.8e-17	51.95	Pectin lyase-like superfamily protein	[more]
AT3G07830.1	2.0e-16	50.00	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 28..95 e-value: 3.5E-12 score: 46.0
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 10..115 e-value: 7.2E-14 score: 53.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..116
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 26..109
None	No IPR available	PANTHER	PTHR31375:SF248	POLYGALACTURONASE	coord: 26..109
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..29 score: 5.0
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 27..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC08G148360.1	CaUC08G148360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity