CaUC08G147460 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC08G147460
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr08: 18671910 .. 18675490 (-)
RNA-Seq ExpressionCaUC08G147460
SyntenyCaUC08G147460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTTTCTCTTTGGATTATATTACCTAGGCATATCAACAATAAAGAATAAAATTCAGAAATAAATACCATATATTGTAGATTTTCTCTTGAAGATTACAAATATTGCACATATAAATATCCTTAAATTTAAGAACATTTTTTGCATGTGTAGAGAGTTAGAGAAGTAAGAACAAGCAAACGCTGAGAAACTATACAGCAGGTCAAAGCAAAATTTTCAATATTGTATACGAATTTTTTTTTTTCCAGAAAACCTGGGCTGTGAAGCGAGGAAGCATGAGCTTCAATATTTGTTCAAGGACTTGGGTCCCAGCTGATTCAATTGCTTGTACAGGAATTGCACGGAAGGCGAAAGGAATCTCAATGTTAACCTGGATTTCCCAGAATAAGACAATTATATTTTGTTCTTGGACAATGCACACATATTTTCTAGTGCCAATGTTGTTGAATAAAATTGCCATTACCTCGATGACAGTATCCGATGTGAGCTTCTGCAAGGGTGAGTTGCCTCGATTCACATCATAAGATATCTGGTTCACCATATAAGCTGCATTCCGACACCAAATCAATGTCAAAGCAGTCCTGAAAAAAGCATGAACCAAAAACTCAACATGATGAATGGCTGCTCTTCCAGCAAAACAACTCAGAAGTCATGGAGAGCAGCAATACTATAAGGATGCAATCTAAGGCCAAAAACTAAAAACATTCAGTAATTCTTGCTTTCCTATACTGGGTGCTAATTACTGGAATAGGCCGAGAAAGTTGCTCTCCAATTGGCCGTTCGGGCAAGTGGCAATATCAAACTAGTCAAAATCCTCCAGAAAAAGGGGGAAAAGTTCTTTATGCAGAAGTAGGATGGAGTTATGAACTTATGCAAACAAAAGTTCCATATTCAATAAACAGTCTAATAACTCTAATAATTCTTTATTCTAGCAGACTACCACTTATTTTCTGTGTAGTAAACCAAGAAATGACAACAAACTCTTCTTACAAATTACAACACATCTGAGAAAATGACAACAAATTCTTCTTACAAATTACAACACATCTGAGAAAATGACAACAAATTCTCTATTGAAATTGAATTAATGGTTATTACACGTTATGATATAGGGAAAGTGAGAAAAGACTAAGAGCAATGGACCATGGGCACAAAATCCTTCAATTTTTCATTTCGAAATTCACCTCATACATATTTTACAACAAAGAGAAAACCGTAGGAAATTTGAAGGCAGCAAATAACTCATCGTTCAGTTGCTTCCTCGGACACAAAAACATGCGGAAAGCAAGGAGAATAAGAACATATTTGGAAGCGATTTTATTTAAAGTCACTTCTATCATGTTCAAAATCAATCCAAAACATGCACTTAACTGTTCAAAATCATTTTCGTGTTTGATTTTTACACATTTTAACGGGATTTTGTATCAAAGTGACTTTAAACCTGACAAAAATGATTCTAAACTGTTTTAAAATCACTCCCAAACGGCAAACATGCCTTAATCCATTTGGTACGAGTGTTTGATGTTTCTACACATTAGTTATGCTTATGCATAATTCAGATTCTCACCATCAAATTTATCATTCTGTGCAACCACGATTGGGGAGCCCTCAAGCTGTCCATTTAAACATGTAAAAAATAAGAACATAATAAAAAAAAAAAAAAACAAGAAGTAAACTGAGCATTCAACATTCCACAAAACAAGATAAGGCAAATTAATCCAGACCTTACACGACAGCAGCTTGATACAACACCCATTAGGCTGCACTTCAACTCTAACAATCAAAACAGGGCAAACCTCAAACGCAAAGAATTTAAATCTATAAACATAACACCTAAAGGTGCAGTCATCAATCCGCTCAATCCTCTCCGCATCCAACACCGAGTATTGACTAGCCGGCAAACTCATATACTCATCTGCATCATCCAAACACAATCCCTCAAAATCAAAAACCCAAAAAACGCACATTACATGCAATCAAAAGTTCATCACATAATCCAAAACCCCTTCTAACATTACTTAGAGGCCGCGCCAACTGCCGAACCGTGACGGACTCACTCCTCCGGGCAATGAAACGCGCTTTTGGATTGGAATTCGTGGAGATCCGAAGCGAAGGCCTGGGAGAATCGTCTGCAGAGGAAGCAAGTATAAGGAATGGTCTGTGGGTGAGAGAAAAAGAAGCTCTAGGGTTTTTGCAGTGGAGGAAAATAGAAGACGGAGAGCAAAAACTCAACGCCATTAACGCGTTTGAGAATTTTGCAGAGAGGAATTGGATTATTGGAAGGGATATTGATGTTTGAGGCTTTCGGTGAAGGAAGTAATCAAGCAAAGATGGGGTGTGAGAGATGGATAAGACAATGGTAAATGAAACAACCCATTTTTTCAGCCATTGCATTGCTGTTATAAGTCTAGCCATTATTTATTTTATTTACAAAAAATACTTTTTACTAAATTCTCCAATTACAATTTGATATACTATGAATTCTTTTTATTATTATTATTTTTTTTTGAAATATTTAAATTATTTTTTCTATGTGGAGTGAGAGTGGGATGCATAAAAATGGGTGACGAATAATGCACCTAAATATTTCTACGTTTTTTAATGTACAACCCGCAATTATAATAAGGTGGATTCATATTTTCTTATTATGTTTGATTATATTCGCAAGTAAACATGCGTGGATATAAAAATTGTAGAGATGGAGATCGGATCTTCCACCTCTAGGATGAAAGTCATAGTATTATTCACTTATTAAATTTGTTTGTCCATCCACCGAAAAGTTAGAGAAAAGTTTATAGATGTAATATACGCTAGTTATTACTTAATTATGCTTACTATAACCACGAACTATATATAAATTAAAGTATGATAATTTAAGATGACACTAAGTTTAGAGAACTCTACTACAACGTAAAGTGAACATTTAATATAAATATGCATCATGCATGCATAAATAACCCGAACACTACACACATCTATTCTATATATTCTATTCGACTCAGCCTCGCCACTCCCGACCTCCAATGGAAGCCGTCAATGGCGGCGCCACCGCCTTTATTGGTATTTCTTCTTCAATCCGACGCCAAATGCAAGTAACTATTGTTATTGGTAATGCAATTAACTGCTTATTTCTATCCAACATTTGCTTTCATGGCGTAATTTCTTCCCATCCTCCGCGTCCGGATCCGTATCCCGAACCAAATCCAGAGCCAGTCCCGGTAGAACCTCCGCCCCCGCCACCGCCGCCACCTCCTCCTCCTCCACCGCCTCCTTTGCCGCTCCCACTGCCATATCCGCCTCCGCTGCCGTATCCCGAGCCGTAGCCTGATCCATTTCCGCCTCCGGAACCTCCACCTCCCCCTCCTCCTCTGCCCCCACCGCCTCCGCCTCCGCCGCCTCTTCCAAACCCGGAACCGCTTCCTGATCCGAATCCAGACCCGAATCCGGATCCAGACCCTGTTCCGCCCCCACCTCCACCACCGCTTCCTCCGCCACCGCCACCGCCTCTGCCGAACGCTCCGTCGCCTTCTCCCTCACCGTATCCTTCGCCTCCGCCAGAACCAAAACCAGAACCGTAA

mRNA sequence

ATGAAAGGCCGCGCCAACTGCCGAACCGTGACGGACTCACTCCTCCGGGCAATGAAACGCGCTTTTGGATTGGAATTCGTGGAGATCCGAAGCGAAGGCCTGGGAGAATCGTCTGCAGAGGAAGCAAGTATAAGGAATGGTCTGTGGGTGAGAGAAAAAGAAGCTCTAGGGTTTTTGCAGTGGAGGAAAATAGAAGACGGAGAGCAAAAACTCAACGCCATTAACGCGTTTGAGAATTTTGCAGAGAGGAATTGGATTATTGGAAGGGATATTGATCCTCGCCACTCCCGACCTCCAATGGAAGCCGTCAATGGCGGCGCCACCGCCTTTATTGGTATTTCTTCTTCAATCCGACGCCAAATGCAACCTGATCCATTTCCGCCTCCGGAACCTCCACCTCCCCCTCCTCCTCTGCCCCCACCGCCTCCGCCTCCGCCGCCTCTTCCAAACCCGGAACCGCTTCCTGATCCGAATCCAGACCCGAATCCGGATCCAGACCCTGTTCCGCCCCCACCTCCACCACCGCTTCCTCCGCCACCGCCACCGCCTCTGCCGAACGCTCCGTCGCCTTCTCCCTCACCGTATCCTTCGCCTCCGCCAGAACCAAAACCAGAACCGTAA

Coding sequence (CDS)

ATGAAAGGCCGCGCCAACTGCCGAACCGTGACGGACTCACTCCTCCGGGCAATGAAACGCGCTTTTGGATTGGAATTCGTGGAGATCCGAAGCGAAGGCCTGGGAGAATCGTCTGCAGAGGAAGCAAGTATAAGGAATGGTCTGTGGGTGAGAGAAAAAGAAGCTCTAGGGTTTTTGCAGTGGAGGAAAATAGAAGACGGAGAGCAAAAACTCAACGCCATTAACGCGTTTGAGAATTTTGCAGAGAGGAATTGGATTATTGGAAGGGATATTGATCCTCGCCACTCCCGACCTCCAATGGAAGCCGTCAATGGCGGCGCCACCGCCTTTATTGGTATTTCTTCTTCAATCCGACGCCAAATGCAACCTGATCCATTTCCGCCTCCGGAACCTCCACCTCCCCCTCCTCCTCTGCCCCCACCGCCTCCGCCTCCGCCGCCTCTTCCAAACCCGGAACCGCTTCCTGATCCGAATCCAGACCCGAATCCGGATCCAGACCCTGTTCCGCCCCCACCTCCACCACCGCTTCCTCCGCCACCGCCACCGCCTCTGCCGAACGCTCCGTCGCCTTCTCCCTCACCGTATCCTTCGCCTCCGCCAGAACCAAAACCAGAACCGTAA

Protein sequence

MKGRANCRTVTDSLLRAMKRAFGLEFVEIRSEGLGESSAEEASIRNGLWVREKEALGFLQWRKIEDGEQKLNAINAFENFAERNWIIGRDIDPRHSRPPMEAVNGGATAFIGISSSIRRQMQPDPFPPPEPPPPPPPLPPPPPPPPPLPNPEPLPDPNPDPNPDPDPVPPPPPPPLPPPPPPPLPNAPSPSPSPYPSPPPEPKPEP
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 159..175
score: 44.71
coord: 137..158
score: 42.73
coord: 125..137
score: 52.31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..206

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC08G147460.1CaUC08G147460.1mRNA