CaUC08G147020 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC08G147020
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr08: 18168648 .. 18170255 (-)
RNA-Seq ExpressionCaUC08G147020
SyntenyCaUC08G147020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACCCATCTCCACCATCTTGTCTTTTCTCTTGTCTTCTCTATCCTTTTTATCTGATCCTTGGCCTGAGGCATTCTATGGTCTCCCTCTCCAAAACTCCGCACAGCCATCGCTCCTCGGGTATGCTATTTTCCACACAGATACTCCAATTGCGTTATAATTTGCATAACACAAATCAAACTGTTTAAGTCTTCTACAAAGTTTGCTCAAGTTTTCTGTTGAAGATGAAGACAGGGCAGATAAGTAATGGTAATTTCATACTTCCCTTCTGCTAATCATATGCACTTGTGGTATTGTGGTACACTGAAGTTCTATTCCAAAATGAGAGATCCAAAGATTGTAAATGTAATATAATCAGCTCAAACTAATTTTATAGTTCTAATTCTATGATACACCCTGTTTTTCTGGTGTGGAATTAAGGAAAGAAAGAATTTGATGCTTGGGTGGATCTAATTGCCAACAAAATATATGTATATTTATGTTTAAGATCTAATTGCCAACAATATATGTATATTTTTATATGTTAAATTTTTTCAAACATATTCAAACATTTGATTTCAGCTGATCTCTTAATCGGAAGTATATACCTAAAACTAATTGTACTCGAATTAAACCATAAATTTTATATTGTTTCATCATGCTCTCACACATTTTCTTATACATTTGCAAACAAGCGTATAATAGAATCTAAGCACCTATCAAGAGGTAAGTAATGTTTAATCGGTTAAATAGTGCTCATGTCAATCATGAAACAAATAAGTAAATGACTCACATTCCTACATTTTTACTAATTAATATCTACTTTCATTTTCTTGAAAATTATCTATTGCAGATAAACAGTGATATTTTACTACTATTTGTAAATAATTTCATTAGTCTTGTCATTTAAAATAATTTCTTTTATTTTTAAATATTGTTGTTTATTAATAAATAAATAAATAAAACTAAATTAGAGAAATTGGGTTTAAATTAACTAAATATCAAAGAACACTGTTTTAACTACTATTAATGAGAGGAAATATACAATGAATTTTGGATAGACTACTATCATTTAGAACATATGTGGAGCATAAAAAGTTAACCACTTGAAACAAATAAAAGATAATTAATCATGACTAAGCTAAAACTACCACAACACTAAATTATGGGGATGTATTAGTCAAATAAAAGATGATATTGGTTTGTGCTAATTGAAATAATTAAACACTCGACTATTAGTGCTAATTGAAATAATTAATCAAAAGCCAATAGCAATTGGAATATCTCAACACGACCAACACTAAATTCTCAATTCAAACTCAAAACATCAAAACATAAGAACTCCAAATGTAACATTTTAAAACCTAAGGACCAAATAAAAACTAGTTCCAAAACTTAGGTCAAAGCTCCCTTCTTACCAGACACTTCAGAGCACATATTCATTCACAGAAGACAGATTAAAGGAAAAGGAGCGAAGAAGCAGGTATGAAGAGCAAAATGCATAATTTAGGCTTAAAAACAAAGATTATCTTCAATTGGCTGGTCATCCCACAACCTTCTTCCGGCATTTGATTCTTTATTCAGCCTTTCACTCAACAACGAACTAGAGGAGTCCAAATATCTCTGA

mRNA sequence

ATGGCACCCATCTCCACCATCTTGTCTTTTCTCTTGTCTTCTCTATCCTTTTTATCTGATCCTTGGCCTGAGGCATTCTATGGTCTCCCTCTCCAAAACTCCGCACAGCCATCGCTCCTCGGGTATGCTATTTTCCACACAGATACTCCAATTGCGTCAAAGCTCCCTTCTTACCAGACACTTCAGAGCACATATTCATTCACAGAAGACAGATTAAAGGAAAAGGAGCGAAGAAGCAGCCTTTCACTCAACAACGAACTAGAGGAGTCCAAATATCTCTGA

Coding sequence (CDS)

ATGGCACCCATCTCCACCATCTTGTCTTTTCTCTTGTCTTCTCTATCCTTTTTATCTGATCCTTGGCCTGAGGCATTCTATGGTCTCCCTCTCCAAAACTCCGCACAGCCATCGCTCCTCGGGTATGCTATTTTCCACACAGATACTCCAATTGCGTCAAAGCTCCCTTCTTACCAGACACTTCAGAGCACATATTCATTCACAGAAGACAGATTAAAGGAAAAGGAGCGAAGAAGCAGCCTTTCACTCAACAACGAACTAGAGGAGTCCAAATATCTCTGA

Protein sequence

MAPISTILSFLLSSLSFLSDPWPEAFYGLPLQNSAQPSLLGYAIFHTDTPIASKLPSYQTLQSTYSFTEDRLKEKERRSSLSLNNELEESKYL
Homology
[Close]
BLAST of CaUC08G147020 vs. NCBI nr
Match: KGN47818.1 (hypothetical protein Csa_004141 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 7.4e-16
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 1  MAPISTILSFLLSSLSFLSDPWPEAFYGLPLQNSAQPSLLGYAIFHTDTPI 52
          MAPISTILSFLLSSLSFLSDPWPEAFYGLPL++SAQ SL+GYAIFHTDT I
Sbjct: 25 MAPISTILSFLLSSLSFLSDPWPEAFYGLPLEHSAQLSLIGYAIFHTDTAI 75

[Close]
BLAST of CaUC08G147020 vs. NCBI nr
Match: KAA0036462.1 (hypothetical protein E6C27_scaffold147G00310 [Cucumis melo var. makuwa] >TYK00026.1 hypothetical protein E5676_scaffold360G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 9.4e-11
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 0 

Query: 1  MAPISTILSFLLSSLSFLSDPWPEAFYGLPLQNSAQPSLLGYAI 45
          MAPISTILSFLLSSLSFLSDPWPEAFYGLPL++SAQ SL+G+ +
Sbjct: 1  MAPISTILSFLLSSLSFLSDPWPEAFYGLPLEHSAQLSLIGFLL 44

[Close]
BLAST of CaUC08G147020 vs. ExPASy TrEMBL
Match: A0A0A0KE34 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405315 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.6e-16
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 1  MAPISTILSFLLSSLSFLSDPWPEAFYGLPLQNSAQPSLLGYAIFHTDTPI 52
          MAPISTILSFLLSSLSFLSDPWPEAFYGLPL++SAQ SL+GYAIFHTDT I
Sbjct: 25 MAPISTILSFLLSSLSFLSDPWPEAFYGLPLEHSAQLSLIGYAIFHTDTAI 75

[Close]
BLAST of CaUC08G147020 vs. ExPASy TrEMBL
Match: A0A5D3BP26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00710 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.6e-11
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 0 

Query: 1  MAPISTILSFLLSSLSFLSDPWPEAFYGLPLQNSAQPSLLGYAI 45
          MAPISTILSFLLSSLSFLSDPWPEAFYGLPL++SAQ SL+G+ +
Sbjct: 1  MAPISTILSFLLSSLSFLSDPWPEAFYGLPLEHSAQLSLIGFLL 44

The following BLAST results are available for this feature:
BLAST of CaUC08G147020 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47818.17.4e-1690.20hypothetical protein Csa_004141 [Cucumis sativus][more]
KAA0036462.19.4e-1184.09hypothetical protein E6C27_scaffold147G00310 [Cucumis melo var. makuwa] >TYK0002... [more]
BLAST of CaUC08G147020 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC08G147020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE343.6e-1690.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405315 PE=4 SV=1[more]
A0A5D3BP264.6e-1184.09Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CaUC08G147020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 58..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC08G147020.1CaUC08G147020.1mRNA