CaUC08G146370 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC08G146370
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Ciama_Chr08: 17437759 .. 17438875 (+)
RNA-Seq Expression	CaUC08G146370
Synteny	CaUC08G146370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAACTTCTGGTACTGTGCTTAATGGCTTGGGCTCACCCTTCCTCCGTGGAGGTAGCAGAACTCAGACCTTGTTGGCCGGAGCCAGAGGCGGTGTCAATGTTGTCGGCTCTCGTAAGCTTGTTGTCGTCGCGGCTGCTCAGCCCAAGAAGTCTTGGATCCCTGCTGTTAAGGGTGGCGGCAACTTGATCGACCCAGAATGGCTTGATGGCTCGTATGTCTATCTTACGTTGTTTAGTTAATGTTTTGTATCTGCAGTTGGAAGATAGGATTTTAGTCTTTGTTTAACCGGGGAAGAAAATTAGGAAACAGAATTGTTATCAAACATTAGTTATAAGCAAGTAATGTCGATAATTTGGTATAGGCATTTTATCAAACAGTTTTTAGGCAATTACTGTGTAAAATATGGTTTTGTCATTTCATCCAACATTTTCGAAGCAGTTACTCTGAAAAATCTAGAAGAGGCATTTAATCAAACACTTTCTAAGCAACCATAGTTGAAATTTTTAGAAGAGGCGTTTCATCAAACAGTTGATGAGCAATTACTTGTTCCATTTGCGTAGACTTCCAGGCGACTACGGCTTCGACCCACTAGGGTTGGGGAAGGACCCAGCCTTTCTGAAGTGGTACAGAGAGGCAGAGCTGATCCACGGGCGGTGGGCAATGGCAGCAGTGGTCGGAATCTTCGTAGGACAAGCGTGGAGTGGGATTCCATGGTTCGAAGCCGGAGCAGATCCAGGCGCAATCGCTCCATTCTCCTTCGGATCACTGCTAGGAACCCAGCTTCTGCTAATGGGATGGGTTGAAAGCAAGCGATGGGTGGATTTCTTCAACCCAGAATCTCAAGCGGTGGAATGGGCGACGCCATGGTCGAGAACAGCAGAGAACTTCGCAAACGCAACCGGAGAACAAGGGTATCCCGGAGGAAAATTCTTCGATCCATTGGGATTTGCAGGAACTATTAAAGATGGAGTTTACATTCCGGACACGGAGAAATTGGAGAGATTGAAGTTGGCGGAGATCAAGCATGCTAGAATCGCTATGTTAGCAATGCTCATCTTCTACTTTGAAGCTGGACAGGGGAAGACGCCATTGGGTGCTCTTGGATTGTAA

mRNA sequence

ATGGCTGCAACTTCTGGTACTGTGCTTAATGGCTTGGGCTCACCCTTCCTCCGTGGAGGTAGCAGAACTCAGACCTTGTTGGCCGGAGCCAGAGGCGGTGTCAATGTTGTCGGCTCTCGTAAGCTTGTTGTCGTCGCGGCTGCTCAGCCCAAGAAGTCTTGGATCCCTGCTGTTAAGGGTGGCGGCAACTTGATCGACCCAGAATGGCTTGATGGCTCACTTCCAGGCGACTACGGCTTCGACCCACTAGGGTTGGGGAAGGACCCAGCCTTTCTGAAGTGGTACAGAGAGGCAGAGCTGATCCACGGGCGGTGGGCAATGGCAGCAGTGGTCGGAATCTTCGTAGGACAAGCGTGGAGTGGGATTCCATGGTTCGAAGCCGGAGCAGATCCAGGCGCAATCGCTCCATTCTCCTTCGGATCACTGCTAGGAACCCAGCTTCTGCTAATGGGATGGGTTGAAAGCAAGCGATGGGTGGATTTCTTCAACCCAGAATCTCAAGCGGTGGAATGGGCGACGCCATGGTCGAGAACAGCAGAGAACTTCGCAAACGCAACCGGAGAACAAGGGTATCCCGGAGGAAAATTCTTCGATCCATTGGGATTTGCAGGAACTATTAAAGATGGAGTTTACATTCCGGACACGGAGAAATTGGAGAGATTGAAGTTGGCGGAGATCAAGCATGCTAGAATCGCTATGTTAGCAATGCTCATCTTCTACTTTGAAGCTGGACAGGGGAAGACGCCATTGGGTGCTCTTGGATTGTAA

Coding sequence (CDS)

ATGGCTGCAACTTCTGGTACTGTGCTTAATGGCTTGGGCTCACCCTTCCTCCGTGGAGGTAGCAGAACTCAGACCTTGTTGGCCGGAGCCAGAGGCGGTGTCAATGTTGTCGGCTCTCGTAAGCTTGTTGTCGTCGCGGCTGCTCAGCCCAAGAAGTCTTGGATCCCTGCTGTTAAGGGTGGCGGCAACTTGATCGACCCAGAATGGCTTGATGGCTCACTTCCAGGCGACTACGGCTTCGACCCACTAGGGTTGGGGAAGGACCCAGCCTTTCTGAAGTGGTACAGAGAGGCAGAGCTGATCCACGGGCGGTGGGCAATGGCAGCAGTGGTCGGAATCTTCGTAGGACAAGCGTGGAGTGGGATTCCATGGTTCGAAGCCGGAGCAGATCCAGGCGCAATCGCTCCATTCTCCTTCGGATCACTGCTAGGAACCCAGCTTCTGCTAATGGGATGGGTTGAAAGCAAGCGATGGGTGGATTTCTTCAACCCAGAATCTCAAGCGGTGGAATGGGCGACGCCATGGTCGAGAACAGCAGAGAACTTCGCAAACGCAACCGGAGAACAAGGGTATCCCGGAGGAAAATTCTTCGATCCATTGGGATTTGCAGGAACTATTAAAGATGGAGTTTACATTCCGGACACGGAGAAATTGGAGAGATTGAAGTTGGCGGAGATCAAGCATGCTAGAATCGCTATGTTAGCAATGCTCATCTTCTACTTTGAAGCTGGACAGGGGAAGACGCCATTGGGTGCTCTTGGATTGTAA

Protein sequence

MAATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKSWIPAVKGGGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL

Homology

[Close]

BLAST of CaUC08G146370 vs. NCBI nr
Match: BAI52949.1 (light-harvesting complex II protein [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 521.2 bits (1341), Expect = 5.2e-144
Identity = 253/255 (99.22%), Postives = 253/255 (99.22%), Query Frame = 0


Query: 1   MAATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKSWIPAVKG 60
           MAATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKSWIPAVKG
Sbjct: 1   MAATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKSWIPAVKG 60

Query: 61  GGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPW RTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWLRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFAN TGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANTTGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 241 FEAGQGKTPLGALGL 255

[Close]

BLAST of CaUC08G146370 vs. NCBI nr
Match: XP_022993917.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 518.5 bits (1334), Expect = 3.3e-143
Identity = 249/255 (97.65%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 1   MAATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKSWIPAVKG 60
           MAATSG VLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLV+VAAAQPKKSWIPAVKG
Sbjct: 1   MAATSGAVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKG 60

Query: 61  GGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNL+DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ+VEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALG+
Sbjct: 241 FEAGQGKTPLGALGV 255

[Close]

BLAST of CaUC08G146370 vs. NCBI nr
Match: KAG7016421.1 (Chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 517.3 bits (1331), Expect = 7.5e-143
Identity = 248/255 (97.25%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 1   MAATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKSWIPAVKG 60
           MAATSG VLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLV+VAAAQPKKSWIPAVKG
Sbjct: 1   MAATSGAVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKG 60

Query: 61  GGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNL+DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ+VEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDT+KLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTDKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALG+
Sbjct: 241 FEAGQGKTPLGALGV 255

[Close]

BLAST of CaUC08G146370 vs. NCBI nr
Match: KAG6578893.1 (Chlorophyll a-b binding protein CP24 10A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 516.2 bits (1328), Expect = 1.7e-142
Identity = 247/255 (96.86%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 1   MAATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKSWIPAVKG 60
           MAATSG VLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLV+VAA+QPKKSWIPAVKG
Sbjct: 1   MAATSGAVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVIVAASQPKKSWIPAVKG 60

Query: 61  GGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNL+DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ+VEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDT+KLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTDKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALG+
Sbjct: 241 FEAGQGKTPLGALGV 255

[Close]

BLAST of CaUC08G146370 vs. NCBI nr
Match: XP_023550942.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 515.8 bits (1327), Expect = 2.2e-142
Identity = 247/255 (96.86%), Postives = 253/255 (99.22%), Query Frame = 0


Query: 1   MAATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKSWIPAVKG 60
           MAATSG VLNGLGSPFL GGSRTQTLLAGARGGVNVVGSRKLV+VAAAQPKKSWIPAVKG
Sbjct: 1   MAATSGAVLNGLGSPFLHGGSRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKG 60

Query: 61  GGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNL+DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ+VEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHAR+AMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARLAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALG+
Sbjct: 241 FEAGQGKTPLGALGV 255

[Close]

BLAST of CaUC08G146370 vs. ExPASy Swiss-Prot
Match: P27524 (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAP10A PE=3 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 2.0e-122
Identity = 210/256 (82.03%), Postives = 228/256 (89.06%), Query Frame = 0


Query: 1   MAATSGTVLNGLGSPFLRGGSRTQTLLAGARGG-VNVVGSRKLVVVAAAQPKKSWIPAVK 60
           MA TS  VLNGL S FL GG+++Q LLA      V    + K   V AA  KKSWIPAV+
Sbjct: 1   MATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVR 60

Query: 61  GGGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 120
           GGGNL+DPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAW
Sbjct: 61  GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW 120

Query: 121 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTA 180
           SGIPWFEAGADPGAIAPFSFG+LLGTQL+LMGWVESKRWVDFF+P+SQ+VEWATPWS+TA
Sbjct: 121 SGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTA 180

Query: 181 ENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 240
           ENFAN TGEQGYPGGKFFDPL  AGT+ +GVY+PDTEKLERLK+AEIKHAR+AMLAMLIF
Sbjct: 181 ENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIF 240

Query: 241 YFEAGQGKTPLGALGL 256
           YFEAGQGKTPLGALGL
Sbjct: 241 YFEAGQGKTPLGALGL 256

[Close]

BLAST of CaUC08G146370 vs. ExPASy Swiss-Prot
Match: P27525 (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAP10B PE=3 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 3.7e-121
Identity = 212/257 (82.49%), Postives = 229/257 (89.11%), Query Frame = 0


Query: 1   MAATSGT-VLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAA-QPKKSWIPAV 60
           M  TS T VLNGL S FL GG +TQ LL GA     V   ++ VV AAA  PKKSWIPAV
Sbjct: 1   MTTTSATAVLNGLSSSFLTGGKKTQALL-GAHVTARVTTPKRFVVAAAAVAPKKSWIPAV 60

Query: 61  KGGGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 120
           K GGNL+DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQA
Sbjct: 61  KSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQA 120

Query: 121 WSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRT 180
           WSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF+ +SQ+++WATPWS+T
Sbjct: 121 WSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKT 180

Query: 181 AENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLI 240
           AENFAN TGEQGYPGGKFFDPL  AGT+ +GVY+PDTEKLERLKLAEIKH+R+AMLAMLI
Sbjct: 181 AENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLI 240

Query: 241 FYFEAGQGKTPLGALGL 256
           FYFEAGQGKTPLGALGL
Sbjct: 241 FYFEAGQGKTPLGALGL 256

[Close]

BLAST of CaUC08G146370 vs. ExPASy Swiss-Prot
Match: P36494 (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea OX=3562 PE=2 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 1.9e-120
Identity = 209/259 (80.69%), Postives = 232/259 (89.58%), Query Frame = 0


Query: 2   AATSGT-VLNGLGSPFLRGGSR-TQTLL---AGARGGVNVVGSRKLVVVAAAQPKKSWIP 61
           AATS T ++NG  SPFL GG + +Q+LL   +    GV+    + +VV AAA PKKSWIP
Sbjct: 3   AATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIP 62

Query: 62  AVKGGGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVG 121
           AVKGGGN +DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AV+GIFVG
Sbjct: 63  AVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVG 122

Query: 122 QAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWS 181
           QAW+GIPWFEAGADPGA+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQ+VEWATPWS
Sbjct: 123 QAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWS 182

Query: 182 RTAENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAM 241
           RTAENF+N+TGEQGYPGGKFFDPL  AGTI +GVY PDT+KLERLKLAEIKHAR+AMLAM
Sbjct: 183 RTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAM 242

Query: 242 LIFYFEAGQGKTPLGALGL 256
           LIFYFEAGQGKTPLGALGL
Sbjct: 243 LIFYFEAGQGKTPLGALGL 261

[Close]

BLAST of CaUC08G146370 vs. ExPASy Swiss-Prot
Match: Q8LCQ4 (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-30
Identity = 77/180 (42.78%), Postives = 103/180 (57.22%), Query Frame = 0


Query: 67  PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126
           PEWLDGSLPGD+GFDPLGLG DP  LKW+ +AELIH RWAM AV GI + +    + + E
Sbjct: 75  PEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIE 134

Query: 127 --AGADPGAIAPFSFG-SLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTAENFA 186
             +  D G+   F+   +L   Q++LMGW E +RW D   P S  +E   P      +  
Sbjct: 135 NFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYP------HKV 194

Query: 187 NATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEA 244
           N   + GYPGG +FD + +     + V +        L+  EIK+ R+AMLA L F F+A
Sbjct: 195 NPKPDVGYPGGLWFDFMMWGRGSPEPVMV--------LRTKEIKNGRLAMLAFLGFCFQA 240

[Close]

BLAST of CaUC08G146370 vs. ExPASy Swiss-Prot
Match: Q9C639 (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-30
Identity = 100/244 (40.98%), Postives = 128/244 (52.46%), Query Frame = 0


Query: 17  LRGGSRTQTLLAGARGGVNVVGSRKLVVVAA--------AQPKKSWIPAVKGGGNLIDPE 76
           LRGG  T   L   R   +V+  R   V AA        A  + +W+P       L  P 
Sbjct: 5   LRGGI-TGGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLP------GLNPPP 64

Query: 77  WLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGI---- 136
           +LDG+L GDYGFDPLGLG+DP  LKWY +AEL+H R+AM  V GI        +GI    
Sbjct: 65  YLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLP 124

Query: 137 PWFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTA 196
            W+EAGA       F F S   L+  Q LLMG+ E+KR++DF +P SQA E +  +   A
Sbjct: 125 VWYEAGA-----VKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEA 184

Query: 197 ENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 244
              A    E GYPGG   +PLG A          D +     KL EIK+ R+AM+AML F
Sbjct: 185 ---ALEGLEPGYPGGPLLNPLGLA---------KDVQNAHDWKLKEIKNGRLAMMAMLGF 224

[Close]

BLAST of CaUC08G146370 vs. ExPASy TrEMBL
Match: D1MWY9 (Chlorophyll a-b binding protein, chloroplastic OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=CitLhc PE=2 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 2.5e-144
Identity = 253/255 (99.22%), Postives = 253/255 (99.22%), Query Frame = 0


Query: 1   MAATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKSWIPAVKG 60
           MAATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKSWIPAVKG
Sbjct: 1   MAATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKSWIPAVKG 60

Query: 61  GGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPW RTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWLRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFAN TGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANTTGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 241 FEAGQGKTPLGALGL 255

[Close]

BLAST of CaUC08G146370 vs. ExPASy TrEMBL
Match: A0A6J1JU87 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489772 PE=3 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 1.6e-143
Identity = 249/255 (97.65%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 1   MAATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKSWIPAVKG 60
           MAATSG VLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLV+VAAAQPKKSWIPAVKG
Sbjct: 1   MAATSGAVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKG 60

Query: 61  GGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNL+DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ+VEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALG+
Sbjct: 241 FEAGQGKTPLGALGV 255

[Close]

BLAST of CaUC08G146370 vs. ExPASy TrEMBL
Match: A0A6J1FGC5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445242 PE=3 SV=1)

HSP 1 Score: 515.4 bits (1326), Expect = 1.4e-142
Identity = 247/255 (96.86%), Postives = 253/255 (99.22%), Query Frame = 0


Query: 1   MAATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKSWIPAVKG 60
           MAATSG VLNGLGSPFL GGSRTQTLLAGARGGVNVVGSRKLV+VAAAQPKKSWIPAVKG
Sbjct: 1   MAATSGAVLNGLGSPFLHGGSRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKG 60

Query: 61  GGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNL+DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ+VEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDT+KLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTDKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALG+
Sbjct: 241 FEAGQGKTPLGALGV 255

[Close]

BLAST of CaUC08G146370 vs. ExPASy TrEMBL
Match: A0A6J1JEC2 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486120 PE=3 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 2.6e-141
Identity = 245/255 (96.08%), Postives = 250/255 (98.04%), Query Frame = 0


Query: 1   MAATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKSWIPAVKG 60
           MAATSG +LNGLGSPFL GGSRTQTLLAGARGGVNVV SRKLV+VAAAQPKKSWIPAVKG
Sbjct: 1   MAATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKG 60

Query: 61  GGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGN IDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF+GQAWS
Sbjct: 61  GGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTAE 180
           GIPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ+VEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGT+KDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 241 FEAGQGKTPLGALGL 255

[Close]

BLAST of CaUC08G146370 vs. ExPASy TrEMBL
Match: A0A5D3DGI0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00250 PE=3 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 9.8e-141
Identity = 244/255 (95.69%), Postives = 250/255 (98.04%), Query Frame = 0


Query: 1   MAATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKSWIPAVKG 60
           MAATSG VLNGLGSPFLRG SRT+TLLAGARGGVNVV S KLVV+AAAQPKKSWIP V+G
Sbjct: 1   MAATSGAVLNGLGSPFLRGSSRTRTLLAGARGGVNVVSSSKLVVIAAAQPKKSWIPGVRG 60

Query: 61  GGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNL+DPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ+VEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGT+KDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 241 FEAGQGKTPLGALGL 255

[Close]

BLAST of CaUC08G146370 vs. TAIR 10
Match: AT1G15820.1 (light harvesting complex photosystem II subunit 6 )

HSP 1 Score: 433.3 bits (1113), Expect = 1.3e-121
Identity = 210/255 (82.35%), Postives = 226/255 (88.63%), Query Frame = 0


Query: 3   ATSGTVLNGLGSPFLRGGSRTQTLLAGARG-GVNVVGSRKLVV-VAAAQPKKSWIPAVKG 62
           A SG VL+GLGS FL GG R  T LA   G G   VG + L+V  AAAQPKKSWIPAVKG
Sbjct: 4   AVSGAVLSGLGSSFLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPAVKG 63

Query: 63  GGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 122
           GGN +DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWS
Sbjct: 64  GGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWS 123

Query: 123 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTAE 182
           G+ WFEAGA P AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQ+VEWATPWS+TAE
Sbjct: 124 GVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAE 183

Query: 183 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 242
           NFAN TG+QGYPGG+FFDPLG AG  +DGVY PD EKLERLKLAEIKH+R+AM+AMLIFY
Sbjct: 184 NFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFY 243

Query: 243 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 244 FEAGQGKTPLGALGL 258

[Close]

BLAST of CaUC08G146370 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 135.2 bits (339), Expect = 7.4e-32
Identity = 77/180 (42.78%), Postives = 103/180 (57.22%), Query Frame = 0


Query: 67  PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126
           PEWLDGSLPGD+GFDPLGLG DP  LKW+ +AELIH RWAM AV GI + +    + + E
Sbjct: 75  PEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIE 134

Query: 127 --AGADPGAIAPFSFG-SLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTAENFA 186
             +  D G+   F+   +L   Q++LMGW E +RW D   P S  +E   P      +  
Sbjct: 135 NFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYP------HKV 194

Query: 187 NATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEA 244
           N   + GYPGG +FD + +     + V +        L+  EIK+ R+AMLA L F F+A
Sbjct: 195 NPKPDVGYPGGLWFDFMMWGRGSPEPVMV--------LRTKEIKNGRLAMLAFLGFCFQA 240

[Close]

BLAST of CaUC08G146370 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 134.8 bits (338), Expect = 9.7e-32
Identity = 100/244 (40.98%), Postives = 128/244 (52.46%), Query Frame = 0


Query: 17  LRGGSRTQTLLAGARGGVNVVGSRKLVVVAA--------AQPKKSWIPAVKGGGNLIDPE 76
           LRGG  T   L   R   +V+  R   V AA        A  + +W+P       L  P 
Sbjct: 5   LRGGI-TGGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLP------GLNPPP 64

Query: 77  WLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGI---- 136
           +LDG+L GDYGFDPLGLG+DP  LKWY +AEL+H R+AM  V GI        +GI    
Sbjct: 65  YLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLP 124

Query: 137 PWFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTA 196
            W+EAGA       F F S   L+  Q LLMG+ E+KR++DF +P SQA E +  +   A
Sbjct: 125 VWYEAGA-----VKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEA 184

Query: 197 ENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 244
              A    E GYPGG   +PLG A          D +     KL EIK+ R+AM+AML F
Sbjct: 185 ---ALEGLEPGYPGGPLLNPLGLA---------KDVQNAHDWKLKEIKNGRLAMMAMLGF 224

[Close]

BLAST of CaUC08G146370 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 134.8 bits (338), Expect = 9.7e-32
Identity = 100/244 (40.98%), Postives = 128/244 (52.46%), Query Frame = 0


Query: 17  LRGGSRTQTLLAGARGGVNVVGSRKLVVVAA--------AQPKKSWIPAVKGGGNLIDPE 76
           LRGG  T   L   R   +V+  R   V AA        A  + +W+P       L  P 
Sbjct: 5   LRGGI-TGGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLP------GLNPPP 64

Query: 77  WLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGI---- 136
           +LDG+L GDYGFDPLGLG+DP  LKWY +AEL+H R+AM  V GI        +GI    
Sbjct: 65  YLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLP 124

Query: 137 PWFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTA 196
            W+EAGA       F F S   L+  Q LLMG+ E+KR++DF +P SQA E +  +   A
Sbjct: 125 VWYEAGA-----VKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEA 184

Query: 197 ENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 244
              A    E GYPGG   +PLG A          D +     KL EIK+ R+AM+AML F
Sbjct: 185 ---ALEGLEPGYPGGPLLNPLGLA---------KDVQNAHDWKLKEIKNGRLAMMAMLGF 224

[Close]

BLAST of CaUC08G146370 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 129.8 bits (325), Expect = 3.1e-30
Identity = 83/229 (36.24%), Postives = 112/229 (48.91%), Query Frame = 0


Query: 32  GGVNVVGSRKLVVVAAAQPKKS------------WIPAVKGGGNLIDPEWLDGSLPGDYG 91
           GG  +   +KL V A ++P  S            W P          PEWLDGSLPGD+G
Sbjct: 21  GGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFP------GSTPPEWLDGSLPGDFG 80

Query: 92  FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGA 151
           FDPLGL  DP  LKW  +AE++H RWAM    GIF+ +  + I       W+ AG     
Sbjct: 81  FDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYF 140

Query: 152 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTAENFANATGEQGYPG 211
                  +L   +L+L+GW E +RW D   P S   +   P      N    T + GYPG
Sbjct: 141 T---DKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFP-----NNKLTGT-DVGYPG 200

Query: 212 GKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFE 243
           G +FDPLG+              KL+ L+  EIK+ R+AMLA++  +F+
Sbjct: 201 GLWFDPLGWGS--------GSPAKLKELRTKEIKNGRLAMLAVMGAWFQ 226

The following BLAST results are available for this feature:

BLAST of CaUC08G146370 vs. NCBI nr


Match Name	E-value	Identity	Description
BAI52949.1	5.2e-144	99.22	light-harvesting complex II protein [Citrullus lanatus subsp. vulgaris]	[more]
XP_022993917.1	3.3e-143	97.65	chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita maxima]	[more]
KAG7016421.1	7.5e-143	97.25	Chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucurbita argyrosperma ...	[more]
KAG6578893.1	1.7e-142	96.86	Chlorophyll a-b binding protein CP24 10A, chloroplastic, partial [Cucurbita argy...	[more]
XP_023550942.1	2.2e-142	96.86	chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita pepo sub...	[more]

BLAST of CaUC08G146370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27524	2.0e-122	82.03	Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum ...	[more]
P27525	3.7e-121	82.49	Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum ...	[more]
P36494	1.9e-120	80.69	Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea OX=3562...	[more]
Q8LCQ4	1.0e-30	42.78	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis th...	[more]
Q9C639	1.4e-30	40.98	Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th...	[more]

BLAST of CaUC08G146370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
D1MWY9	2.5e-144	99.22	Chlorophyll a-b binding protein, chloroplastic OS=Citrullus lanatus subsp. vulga...	[more]
A0A6J1JU87	1.6e-143	97.65	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FGC5	1.4e-142	96.86	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JEC2	2.6e-141	96.08	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A5D3DGI0	9.8e-141	95.69	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of CaUC08G146370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15820.1	1.3e-121	82.35	light harvesting complex photosystem II subunit 6	[more]
AT1G19150.1	7.4e-32	42.78	photosystem I light harvesting complex gene 6	[more]
AT1G45474.1	9.7e-32	40.98	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	9.7e-32	40.98	photosystem I light harvesting complex gene 5	[more]
AT3G61470.1	3.1e-30	36.24	photosystem I light harvesting complex gene 2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 67..254 e-value: 7.8E-54 score: 184.4
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 67..243 e-value: 2.4E-48 score: 164.7
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 2..255
None	No IPR available	PANTHER	PTHR21649:SF107	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 2..255
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 62..255

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC08G146370.1	CaUC08G146370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding