CaUC08G146150 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC08G146150
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr08: 17182621 .. 17183115 (+)
RNA-Seq ExpressionCaUC08G146150
SyntenyCaUC08G146150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAGTTCACCAAAGTCCCGAAAGCGAAAGATGAAGAAGCCGCCACAGCCGCCGAGAGCCGCCAAAGCCCGGCCGCCGACGAAGACGATTGAAGTGGACGAAGAACATGATTCCTTAGATTTTGGATACATAGTCCAACAACTCCTCACCGGCGATGGCGGCGAATCCATCTCCGACCACCCTTCTAGTTCTACATCTTCCAATCGTCGGGAAGAATCTGTGCCTGTGGGGAGCCTGTCACCGAGCCCCATTTCTCTGCCGCCGGTTTCTCCAAACGCTTTCACATCGCGGCCGCTGCCACCGTCGCCAGAAGAAGATCTGAGTATTTACGATTATGGCGGTTGGGAAGAGCCGGCAGCGCCATACCCTTTTCTTAAATCCTTTGTTCCAAATATTAATAATTTGAGAATGATTAATAATCCTCCATTATTATCAAATCCAAGTTCCAATTTTTATCCATTTTATATGAAATGGGCAATGTTTTTAGAATAA

mRNA sequence

ATGATGAGTTCACCAAAGTCCCGAAAGCGAAAGATGAAGAAGCCGCCACAGCCGCCGAGAGCCGCCAAAGCCCGGCCGCCGACGAAGACGATTGAAGTGGACGAAGAACATGATTCCTTAGATTTTGGATACATAGTCCAACAACTCCTCACCGGCGATGGCGGCGAATCCATCTCCGACCACCCTTCTAGTTCTACATCTTCCAATCGTCGGGAAGAATCTGTGCCTGTGGGGAGCCTGTCACCGAGCCCCATTTCTCTGCCGCCGGTTTCTCCAAACGCTTTCACATCGCGGCCGCTGCCACCGTCGCCAGAAGAAGATCTGAGTATTTACGATTATGGCGGTTGGGAAGAGCCGGCAGCGCCATACCCTTTTCTTAAATCCTTTGTTCCAAATATTAATAATTTGAGAATGATTAATAATCCTCCATTATTATCAAATCCAAGTTCCAATTTTTATCCATTTTATATGAAATGGGCAATGTTTTTAGAATAA

Coding sequence (CDS)

ATGATGAGTTCACCAAAGTCCCGAAAGCGAAAGATGAAGAAGCCGCCACAGCCGCCGAGAGCCGCCAAAGCCCGGCCGCCGACGAAGACGATTGAAGTGGACGAAGAACATGATTCCTTAGATTTTGGATACATAGTCCAACAACTCCTCACCGGCGATGGCGGCGAATCCATCTCCGACCACCCTTCTAGTTCTACATCTTCCAATCGTCGGGAAGAATCTGTGCCTGTGGGGAGCCTGTCACCGAGCCCCATTTCTCTGCCGCCGGTTTCTCCAAACGCTTTCACATCGCGGCCGCTGCCACCGTCGCCAGAAGAAGATCTGAGTATTTACGATTATGGCGGTTGGGAAGAGCCGGCAGCGCCATACCCTTTTCTTAAATCCTTTGTTCCAAATATTAATAATTTGAGAATGATTAATAATCCTCCATTATTATCAAATCCAAGTTCCAATTTTTATCCATTTTATATGAAATGGGCAATGTTTTTAGAATAA

Protein sequence

MMSSPKSRKRKMKKPPQPPRAAKARPPTKTIEVDEEHDSLDFGYIVQQLLTGDGGESISDHPSSSTSSNRREESVPVGSLSPSPISLPPVSPNAFTSRPLPPSPEEDLSIYDYGGWEEPAAPYPFLKSFVPNINNLRMINNPPLLSNPSSNFYPFYMKWAMFLE
Homology
BLAST of CaUC08G146150 vs. NCBI nr
Match: KAA0058917.1 (hypothetical protein E6C27_scaffold98G00860 [Cucumis melo var. makuwa] >TYK23713.1 hypothetical protein E5676_scaffold1607G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-30
Identity = 95/159 (59.75%), Postives = 111/159 (69.81%), Query Frame = 0

Query: 1   MMSSPKSRKRKMKKPPQPPRAAKARPPTKTIEVDEEHDSLDFGYIVQQLLTGDG-GESIS 60
           M++ PKSRKRK+K+ PQPPR  KA    KTIEV EE D L  GY+V+Q LTG G G SI 
Sbjct: 1   MVNPPKSRKRKLKRSPQPPRPTKA----KTIEV-EEPDGL--GYMVEQFLTGSGSGGSIP 60

Query: 61  DHPSSSTSSNRREESVPVGSLSPSPISLPPVSPNAFTSRPLPPSPEEDLSIYDYGGWEEP 120
           DH  SS+S +R ++ VP+G LSP+PISLPPVSPNAFTS  L PS EE+LSIYDYGGWEE 
Sbjct: 61  DHYPSSSSDDREDQYVPMGILSPTPISLPPVSPNAFTSTLLAPSSEEELSIYDYGGWEEA 120

Query: 121 A---APYPFLKSFVPNINNLRMINNPPLLSNPSSNFYPF 156
           A    PYP L+S V + NN    NN  L +  SSN  PF
Sbjct: 121 ATGTVPYPILESSVIDPNN---YNNGGLSNWNSSNLEPF 149

BLAST of CaUC08G146150 vs. NCBI nr
Match: KAE8647158.1 (hypothetical protein Csa_018821 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 7.2e-30
Identity = 95/163 (58.28%), Postives = 116/163 (71.17%), Query Frame = 0

Query: 1   MMSSPKSRKRKMKKPPQPPRAAKARPPTKTIEVDEEHDSLDFGYIVQQLLTGDG--GESI 60
           M++SPKSRKRK+K PPQPPRA +A    KTIEV+E      FGY+V+QLL G G  G SI
Sbjct: 1   MLNSPKSRKRKLKTPPQPPRATRA----KTIEVEEPD---GFGYMVEQLLFGSGSSGGSI 60

Query: 61  SDHPSSSTSSNRREESVPVGSLSPSPISLPPVSPNAFTSRPLPPSPEE-DLSIYDYGGWE 120
           +DHPSSS S+  R+E VP+G LSP+PISLPPVSPN FTS PL PS  E +LSI+DYGGWE
Sbjct: 61  TDHPSSS-SNTPRDEYVPMGILSPTPISLPPVSPNDFTSTPLAPSTSEGELSIHDYGGWE 120

Query: 121 EPA---APYPFLK-SFV-PNINNLRMINNPPLLSNPSSNFYPF 156
           E A     YPFL+ SF+ PN NN   +++    S+ +SN  PF
Sbjct: 121 EAATGMVAYPFLESSFIDPNNNNNGGLSSSNSSSSSNSNLEPF 155

BLAST of CaUC08G146150 vs. NCBI nr
Match: XP_038885909.1 (extensin-like [Benincasa hispida])

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-07
Identity = 59/161 (36.65%), Postives = 84/161 (52.17%), Query Frame = 0

Query: 7   SRKRKMKKPPQPPRAAKARPPTKTIEVDEEHDSL------DFGYIVQQLLTGDGGESISD 66
           +  RK+KKPP+PP+ AK   P+  +  + E   +      DF YIV QLLTGD       
Sbjct: 20  NNSRKIKKPPRPPKTAKTAAPSPVVRYENEPKIIKVETPQDFKYIV-QLLTGDPNRPPPQ 79

Query: 67  HPSSSTSSN-RREESVPVGSLSPSPISLP-PVSPNAFTSRPLPPSP----------EEDL 126
           +P +S   + +  +  P G LSP+P SLP  V P+AFT  P PP P          +++L
Sbjct: 80  YPCTSNDHDPQPPDDRPQGILSPTPTSLPLLVYPDAFTPSPSPPPPLPLPLPPSSSDQEL 139

Query: 127 SIYD-YGGWEEPAAPYPFLKSFVPNINNLRMINNPPLLSNP 149
            I+D    W EPAA    L S+ P +++  ++  PPLL  P
Sbjct: 140 CIFDLLEEWAEPAA----LSSY-PVVDSPPLLPPPPLLPAP 174

BLAST of CaUC08G146150 vs. NCBI nr
Match: KAG6578907.1 (hypothetical protein SDJN03_23355, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.2 bits (139), Expect = 8.0e-05
Identity = 55/165 (33.33%), Postives = 78/165 (47.27%), Query Frame = 0

Query: 2   MSSPKSRKRKMKKPPQPPRAAKARPPTKTIE----VDEEHDSLDFGYIVQ-QLLTGDGGE 61
           M S  +RKRKMKKPP PPRAAKA+ P K  +    ++ E D+ +F ++V+    +    +
Sbjct: 1   MESSATRKRKMKKPPAPPRAAKAQAPAKIRKSKKIIEVEEDASEFRHMVRFPGSSSSRSD 60

Query: 62  SISDHPSSSTSSNRREESVPVGSLSPSPISLPPVSPNAFTSRPLPPSPEEDLSIYDYGGW 121
           S SD PS+STS++    S    + S     L P S              E+LS+YDY GW
Sbjct: 61  SDSDRPSTSTSTSTSTSS---STFSDGRNGLSPSS--------------EELSVYDYEGW 120

Query: 122 EEP-AAPYPFLKSFVPNINNLRMINN-------PPLLSNPSSNFY 154
           E+P     P   S +P +      +        PP+  NP    Y
Sbjct: 121 EDPLVIVNPRPSSGIPPLTTYSGFDYSGLVYPLPPVFKNPLPPLY 148

BLAST of CaUC08G146150 vs. ExPASy TrEMBL
Match: A0A5D3DJD1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00240 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 9.1e-31
Identity = 95/159 (59.75%), Postives = 111/159 (69.81%), Query Frame = 0

Query: 1   MMSSPKSRKRKMKKPPQPPRAAKARPPTKTIEVDEEHDSLDFGYIVQQLLTGDG-GESIS 60
           M++ PKSRKRK+K+ PQPPR  KA    KTIEV EE D L  GY+V+Q LTG G G SI 
Sbjct: 1   MVNPPKSRKRKLKRSPQPPRPTKA----KTIEV-EEPDGL--GYMVEQFLTGSGSGGSIP 60

Query: 61  DHPSSSTSSNRREESVPVGSLSPSPISLPPVSPNAFTSRPLPPSPEEDLSIYDYGGWEEP 120
           DH  SS+S +R ++ VP+G LSP+PISLPPVSPNAFTS  L PS EE+LSIYDYGGWEE 
Sbjct: 61  DHYPSSSSDDREDQYVPMGILSPTPISLPPVSPNAFTSTLLAPSSEEELSIYDYGGWEEA 120

Query: 121 A---APYPFLKSFVPNINNLRMINNPPLLSNPSSNFYPF 156
           A    PYP L+S V + NN    NN  L +  SSN  PF
Sbjct: 121 ATGTVPYPILESSVIDPNN---YNNGGLSNWNSSNLEPF 149

BLAST of CaUC08G146150 vs. ExPASy TrEMBL
Match: A0A0A0KF90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338060 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.0e-26
Identity = 80/123 (65.04%), Postives = 94/123 (76.42%), Query Frame = 0

Query: 1   MMSSPKSRKRKMKKPPQPPRAAKARPPTKTIEVDEEHDSLDFGYIVQQLLTGDG--GESI 60
           M++SPKSRKRK+K PPQPPRA +A    KTIEV+E      FGY+V+QLL G G  G SI
Sbjct: 1   MLNSPKSRKRKLKTPPQPPRATRA----KTIEVEEPD---GFGYMVEQLLFGSGSSGGSI 60

Query: 61  SDHPSSSTSSNRREESVPVGSLSPSPISLPPVSPNAFTSRPLPPSPEE-DLSIYDYGGWE 120
           +DHPSSS S+  R+E VP+G LSP+PISLPPVSPN FTS PL PS  E +LSI+DYGGWE
Sbjct: 61  TDHPSSS-SNTPRDEYVPMGILSPTPISLPPVSPNDFTSTPLAPSTSEGELSIHDYGGWE 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0058917.11.9e-3059.75hypothetical protein E6C27_scaffold98G00860 [Cucumis melo var. makuwa] >TYK23713... [more]
KAE8647158.17.2e-3058.28hypothetical protein Csa_018821 [Cucumis sativus][more]
XP_038885909.12.2e-0736.65extensin-like [Benincasa hispida][more]
KAG6578907.18.0e-0533.33hypothetical protein SDJN03_23355, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DJD19.1e-3159.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KF903.0e-2665.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338060 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC08G146150.1CaUC08G146150.1mRNA