CaUC08G146120 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC08G146120
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic
Location	Ciama_Chr08: 17170168 .. 17170467 (+)
RNA-Seq Expression	CaUC08G146120
Synteny	CaUC08G146120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCCTATGGTAACTGGGTTCATGAATTATAGTCAACAAACAGTACGAGCTGCAAAGTACATTGGTCAGGGTTTCATGATTACTTTATCTCATGCAAATCGTAGCCCAGAGAGGCGTGATGGAGACAAATCCTGCGATTCAATGATGGGGGAAGAGGAGAACCACCACAAATCTGAAAAATATAGCTCCACAACATCTGGGCAAGCGTCTAGTGACACTATGAACAACTCCAATAGAGAGCTAGTACCGGTGGATCCACAAACAGGAGAAGACCCACGCGACTGGGGAGGAGGGTGA

mRNA sequence

ATGTTCCCTATGGTAACTGGGTTCATGAATTATAGTCAACAAACAGTACGAGCTGCAAAGTACATTGGTCAGGGTTTCATGATTACTTTATCTCATGCAAATCGTAGCCCAGAGAGGCGTGATGGAGACAAATCCTGCGATTCAATGATGGGGGAAGAGGAGAACCACCACAAATCTGAAAAATATAGCTCCACAACATCTGGGCAAGCGTCTAGTGACACTATGAACAACTCCAATAGAGAGCTAGTACCGGTGGATCCACAAACAGGAGAAGACCCACGCGACTGGGGAGGAGGGTGA

Coding sequence (CDS)

ATGTTCCCTATGGTAACTGGGTTCATGAATTATAGTCAACAAACAGTACGAGCTGCAAAGTACATTGGTCAGGGTTTCATGATTACTTTATCTCATGCAAATCGTAGCCCAGAGAGGCGTGATGGAGACAAATCCTGCGATTCAATGATGGGGGAAGAGGAGAACCACCACAAATCTGAAAAATATAGCTCCACAACATCTGGGCAAGCGTCTAGTGACACTATGAACAACTCCAATAGAGAGCTAGTACCGGTGGATCCACAAACAGGAGAAGACCCACGCGACTGGGGAGGAGGGTGA

Protein sequence

MFPMVTGFMNYSQQTVRAAKYIGQGFMITLSHANRSPERRDGDKSCDSMMGEEENHHKSEKYSSTTSGQASSDTMNNSNRELVPVDPQTGEDPRDWGGG

Homology

[Close]

BLAST of CaUC08G146120 vs. NCBI nr
Match: YP_009161608.1 (NADH dehydrogenase subunit I [Pinellia ternata] >AKJ83721.1 NADH dehydrogenase subunit I [Pinellia ternata] >QHN54579.1 NADH dehydrogenase subunit I [Pinellia pedatisecta])

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1  MFPMVTGFMNYSQQTVRAAKYIGQGFMITLSHANRSP 38
          MFPMVTGFMNYSQQTVRAA+YIGQGFMITLSHANR P
Sbjct: 1  MFPMVTGFMNYSQQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of CaUC08G146120 vs. NCBI nr
Match: YP_009253304.1 (NADH-plastoquinone oxidoreductase subunit I [Bruinsmia polysperma] >ANB78777.1 NADH-plastoquinone oxidoreductase subunit I [Bruinsmia polysperma])

HSP 1 Score: 73.9 bits (180), Expect = 8.5e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1  MFPMVTGFMNYSQQTVRAAKYIGQGFMITLSHANRSP 38
          MFPMVTGFMNY QQTVRAA+YIGQGFMITLSHANR P
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of CaUC08G146120 vs. NCBI nr
Match: QVD43818.1 (NADH-plastoquinone oxidoreductase subunit I [Primula obconica subsp. fujianensis] >QVD43901.1 NADH-plastoquinone oxidoreductase subunit I [Primula obconica subsp. fujianensis])

HSP 1 Score: 73.9 bits (180), Expect = 8.5e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1  MFPMVTGFMNYSQQTVRAAKYIGQGFMITLSHANRSP 38
          MFPMVTGFMNY QQTVRAA+YIGQGFMITLSHANR P
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of CaUC08G146120 vs. NCBI nr
Match: YP_009659802.1 (NADH dehydrogenase subunit I [Lythrum salicaria] >QCR99610.1 NADH dehydrogenase subunit I [Lythrum salicaria])

HSP 1 Score: 73.9 bits (180), Expect = 8.5e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1  MFPMVTGFMNYSQQTVRAAKYIGQGFMITLSHANRSP 38
          MFPMVTGFMNY QQTVRAA+YIGQGFMITLSHANR P
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of CaUC08G146120 vs. NCBI nr
Match: YP_009357170.1 (NADH-plastoquinone oxidoreductase subunit I [Primula kwangtungensis] >ARE59651.1 NADH-plastoquinone oxidoreductase subunit I [Primula kwangtungensis])

HSP 1 Score: 73.9 bits (180), Expect = 8.5e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1  MFPMVTGFMNYSQQTVRAAKYIGQGFMITLSHANRSP 38
          MFPMVTGFMNY QQTVRAA+YIGQGFMITLSHANR P
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of CaUC08G146120 vs. ExPASy Swiss-Prot
Match: Q49KU4 (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ndhI PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-12
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1  MFPMVTGFMNYSQQTVRAAKYIGQGFMITLSHANRSP 38
          MFPMVTGFMNY QQTVRAA+YIGQGFMITLSHANR P
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of CaUC08G146120 vs. ExPASy Swiss-Prot
Match: Q9MTH8 (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Oenothera elata subsp. hookeri OX=85636 GN=ndhI PE=3 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-12
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1  MFPMVTGFMNYSQQTVRAAKYIGQGFMITLSHANRSP 38
          MFPMVTGFMNY QQTVRAA+YIGQGFMITLSHANR P
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of CaUC08G146120 vs. ExPASy Swiss-Prot
Match: Q2QD37 (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhI PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.2e-12
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1  MFPMVTGFMNYSQQTVRAAKYIGQGFMITLSHANRSP 38
          MFPMVTGFMNY QQTVRAA+YIGQGF+ITLSHANR P
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFVITLSHANRLP 37

[Close]

BLAST of CaUC08G146120 vs. ExPASy Swiss-Prot
Match: A0ZZ89 (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Gossypium barbadense OX=3634 GN=ndhI PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.2e-12
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MFPMVTGFMNYSQQTVRAAKYIGQGFMITLSHANRSP 38
          MFPMVTGFMNY  QTVRAA+YIGQGFMITLSHANR P
Sbjct: 1  MFPMVTGFMNYGHQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of CaUC08G146120 vs. ExPASy Swiss-Prot
Match: Q2L959 (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Gossypium hirsutum OX=3635 GN=ndhI PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.2e-12
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MFPMVTGFMNYSQQTVRAAKYIGQGFMITLSHANRSP 38
          MFPMVTGFMNY  QTVRAA+YIGQGFMITLSHANR P
Sbjct: 1  MFPMVTGFMNYGHQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of CaUC08G146120 vs. ExPASy TrEMBL
Match: A0A0U2CI00 (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Pinellia ternata OX=199225 GN=ndhI PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1  MFPMVTGFMNYSQQTVRAAKYIGQGFMITLSHANRSP 38
          MFPMVTGFMNYSQQTVRAA+YIGQGFMITLSHANR P
Sbjct: 1  MFPMVTGFMNYSQQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of CaUC08G146120 vs. ExPASy TrEMBL
Match: A0A6B9TXU4 (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Pinellia pedatisecta OX=199222 GN=ndhI PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1  MFPMVTGFMNYSQQTVRAAKYIGQGFMITLSHANRSP 38
          MFPMVTGFMNYSQQTVRAA+YIGQGFMITLSHANR P
Sbjct: 1  MFPMVTGFMNYSQQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of CaUC08G146120 vs. ExPASy TrEMBL
Match: E3UH13 (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Eucalyptus grandis OX=71139 GN=ndhI PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.1e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1  MFPMVTGFMNYSQQTVRAAKYIGQGFMITLSHANRSP 38
          MFPMVTGFMNY QQTVRAA+YIGQGFMITLSHANR P
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of CaUC08G146120 vs. ExPASy TrEMBL
Match: A0A0U2UNP2 (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Oenothera oakesiana OX=482602 GN=ndhI PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.1e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1  MFPMVTGFMNYSQQTVRAAKYIGQGFMITLSHANRSP 38
          MFPMVTGFMNY QQTVRAA+YIGQGFMITLSHANR P
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of CaUC08G146120 vs. ExPASy TrEMBL
Match: G1FB96 (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Spirodela polyrhiza OX=29656 GN=ndhI PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.1e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1  MFPMVTGFMNYSQQTVRAAKYIGQGFMITLSHANRSP 38
          MFPMVTGFMNY QQTVRAA+YIGQGFMITLSHANR P
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of CaUC08G146120 vs. TAIR 10
Match: ATCG01090.1 (NADPH dehydrogenases )

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 1  MFPMVTGFMNYSQQTVRAAKYIGQGFMITLSHANRSP 38
          M PM+TGFMNY QQT+RAA+YIGQGFMITLSH NR P
Sbjct: 1  MLPMITGFMNYGQQTLRAARYIGQGFMITLSHTNRLP 37

The following BLAST results are available for this feature:

BLAST of CaUC08G146120 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009161608.1	2.9e-10	94.59	NADH dehydrogenase subunit I [Pinellia ternata] >AKJ83721.1 NADH dehydrogenase s...	[more]
YP_009253304.1	8.5e-10	91.89	NADH-plastoquinone oxidoreductase subunit I [Bruinsmia polysperma] >ANB78777.1 N...	[more]
QVD43818.1	8.5e-10	91.89	NADH-plastoquinone oxidoreductase subunit I [Primula obconica subsp. fujianensis...	[more]
YP_009659802.1	8.5e-10	91.89	NADH dehydrogenase subunit I [Lythrum salicaria] >QCR99610.1 NADH dehydrogenase ...	[more]
YP_009357170.1	8.5e-10	91.89	NADH-plastoquinone oxidoreductase subunit I [Primula kwangtungensis] >ARE59651.1...	[more]

BLAST of CaUC08G146120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q49KU4	1.1e-12	91.89	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Eucalyptus globulus s...	[more]
Q9MTH8	1.1e-12	91.89	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Oenothera elata subsp...	[more]
Q2QD37	3.2e-12	89.19	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Cucumis sativus OX=36...	[more]
A0ZZ89	4.2e-12	89.19	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Gossypium barbadense ...	[more]
Q2L959	4.2e-12	89.19	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Gossypium hirsutum OX...	[more]

BLAST of CaUC08G146120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0U2CI00	1.4e-10	94.59	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Pinellia ternata OX=1...	[more]
A0A6B9TXU4	1.4e-10	94.59	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Pinellia pedatisecta ...	[more]
E3UH13	4.1e-10	91.89	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Eucalyptus grandis OX...	[more]
A0A0U2UNP2	4.1e-10	91.89	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Oenothera oakesiana O...	[more]
G1FB96	4.1e-10	91.89	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Spirodela polyrhiza O...	[more]

BLAST of CaUC08G146120 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01090.1	3.3e-12	81.08	NADPH dehydrogenases	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC08G146120.1	CaUC08G146120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding