CaUC08G144240 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC08G144240
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr08: 11615574 .. 11616874 (+)
RNA-Seq Expression	CaUC08G144240
Synteny	CaUC08G144240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAATCAAAAAGGGGCTAAACAATTTCATAGTATATATGAGAATACTATCAACTACACTTATAAGATAAACACAAACCTTGTTGATGGGGAGGTTGCCTAAAAACTTAAAGGTTGGCTCCACCTATATTTGGCTAATCTGTGCATCAAAGTTGTAAAATAATGCTGTAGAATTATGGCAACTTCTTCAGCAGTTGTTGTCAATCAGGCCATCTGATTCCGAATCATATTCTGAAAGCAAATTATAGTCGGACACTTCTTCGGAACTATATCGAGTTTCATCCAATTCATGATGATGAAAGTGACCAAATGGATTTTCTTTTTTGTACAAACCTCTGCTTCTATCTAGTTGGCCTTTCCTCAACATGCTTGTAAATCTTTCCCTGATGCTAACAAGAGGGTGCTTCTGCAGAAGCTTGTCACCATCATATGCTTCTCGAAGGATTACAGTCTGCGTGTCGTCCTTCTTAGAGATGTAAAAGATACCAGGATGGCGCTCGAACACTTTTGTGAACTTCTGAGGCATAGAGAATGGTTTGCGCAGGTTGCTTACATTCTTTCGTTCGGTTTTCTTTTGCAAGGTAAGGTGAAGAAGCTCATGAAAGACTCCGACAATCCTCTTTTCAGATACATCAGTACGGGGATCCAAATGGGAGGCATCACAATATGGAGAAGTGTAAGGGAGCTTCTGCCATTCCTTTAACCAATCCATACATTTTCTCCTGAGTCCAAAACCCCTTGTGAATCCAATTGGAAAGGCCAAACAGCCATTTCTTATGTCTTCTTCCATCTGTTGGGAAGCAGCATTCTTCTGCAGTTCAGAAACAGCAAGATCATTATCCCAGGAAAGAAGTTTCAACCCAATGCGATCATCTCGGAGATGGACGAATGAAAACAAGTCATGGTTATATGGAATGAAAGAGTTCTGATAATCATATGGCAGCCCCATGTCCCATCTCAACTGGTCAATTGTCTGTAAAGGAAGTGTTGAATCACTGGTAAGCATTAGCAATCTGCAAAGCCTAGATCGAAGATCCGTCCAACACTGCCGAAGAACAATGATTTCCTCCTCATGAAGTTCCCTAGCTTCTGGAGTTAAGCAAAAAGATGGCACACGAGTGCCTCCGCTGTCAAGAATATGTGACTCATGAAAGATAGAAGGGTATCTCCTAATGAAGGTAGACATCTTGACATCATTTGGAAGACCAAGCTGCCGACGATGGCAACGCAGATGGTAGACCGGTAAGCAATGTTCAGGACTTGAAGAGATTATGGACACAAGAAAGCAAACAGCCCTGA

mRNA sequence

ATGGGTAAGGTGAAGAAGCTCATGAAAGACTCCGACAATCCTCTTTTCAGATACATCAGTACGGGGATCCAAATGGGAGGCATCACAATATGGAGAAGTCATTCTTCTGCAGTTCAGAAACAGCAAGATCATTATCCCAGGAAAGAAGTTTCAACCCAATGCGATCATCTCGGAGATGGACGAATGAAAACAAGTCATGACCAAGCTGCCGACGATGGCAACGCAGATGGTAGACCGGTAAGCAATGTTCAGGACTTGAAGAGATTATGGACACAAGAAAGCAAACAGCCCTGA

Coding sequence (CDS)

ATGGGTAAGGTGAAGAAGCTCATGAAAGACTCCGACAATCCTCTTTTCAGATACATCAGTACGGGGATCCAAATGGGAGGCATCACAATATGGAGAAGTCATTCTTCTGCAGTTCAGAAACAGCAAGATCATTATCCCAGGAAAGAAGTTTCAACCCAATGCGATCATCTCGGAGATGGACGAATGAAAACAAGTCATGACCAAGCTGCCGACGATGGCAACGCAGATGGTAGACCGGTAAGCAATGTTCAGGACTTGAAGAGATTATGGACACAAGAAAGCAAACAGCCCTGA

Protein sequence

MGKVKKLMKDSDNPLFRYISTGIQMGGITIWRSHSSAVQKQQDHYPRKEVSTQCDHLGDGRMKTSHDQAADDGNADGRPVSNVQDLKRLWTQESKQP

Homology

[Close]

BLAST of CaUC08G144240 vs. ExPASy TrEMBL
Match: A0A0A0K837 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G022365 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.9e-08
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 2  GKVKKLMKDSDNPLFRYISTGIQMGGITIWRS 34
          GKVKKLMKDSDNPLFRYISTGIQM GITIWRS
Sbjct: 61 GKVKKLMKDSDNPLFRYISTGIQMRGITIWRS 92

The following BLAST results are available for this feature:

BLAST of CaUC08G144240 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC08G144240 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC08G144240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K837	2.9e-08	96.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G022365 PE=4 SV=1	[more]

BLAST of CaUC08G144240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC08G144240.1	CaUC08G144240.1	mRNA