CaUC08G144050 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC08G144050
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Photosystem II CP47 reaction center protein
Location	Ciama_Chr08: 10830435 .. 10832201 (-)
RNA-Seq Expression	CaUC08G144050
Synteny	CaUC08G144050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGTCAAAGTTGAAGGGCTGATTCTAAAATCAATTTCCTTCAAACAATGGGTAAAGAGGAGAGTATTACCATATGGTCTGACACATTCAAAATTTCAATTTCCTCGTACTTGTTCAGTTTCTGAAAGTAATCTTCATAGAACTCCTGGAATGTACACAGATCAACAATTAAGCTACAATTCTTCCTCACGCAACAAGAAACAAACAACCCAACATTATGGTTCAAAATAACAAAATTTGTAAGCCACGCCAAGAGGATAAAGAAGTTAATTAGGACACAAAAAATATTCAACAAACAACACCTTAATCTATTGACAATAACACAATCATTTGACAATCAACCAAACTACACCACCTCTAAAATTACAACAAGATTATGATAAAATAAATTAAAAAAAAGCCTAGATCCACACCCACCCTTTCAAGAAAATATATTAAATTCATGATGAAAAAAAATATGCACTAGCAAATATTGGAAGATTGAATAGGCAATAACCTTGTAATTTTGGATGATCCAAACACAGTGTGAATAAGGGCAAATGTAATTAACAGTATACAACTTTCAAATAATAGAGGAAAAATAGAAAACAATTAGAATCAAAGAAAGAAAAGTTGAACTAGAGTGTAAAACCCTAAGCGCGATTGAAATCCTAGATTATTAGGGCAAAACAAAATGAACCTGATAGTTCAATCAAACAGGGAGGTTGCTCAAGAAAACCCCTCATCTTCCCAATAAAACTTACCCAATCCCGAACATTGGCAAAATACAAAGAATTTCATCATGAACAGACTGTCAAACGATCGTTTAAAAAGTGTTGCCGTGGTCGGCGACAAGGTTAACGGTGGAAAACGTCGCCGACAAGCTGTACAGACTGGCCAGACATCACGAGAAACGCGGTGAAGGCTGCTAGCAAGGGCGGGCAGTGACGCGTGACTGGTCAAGCGAAGGACAGATGAAAAACAACGGCAACGACGTAGATCTAGTGGTAGGCGAAGAGCCCACACGAGAAGAAGAAGGTGGGTTGAGGGGATGAGGGTTGGCAACAAGAGAGAAGGGGAAGAAGAAGATTGGGCTAGGGTTCTTTTTTTTCTTTTCTAAAAATAAACAAAATCAAAGAAGGAAAAAGAGAGGGAAAATGGAAGATGGGGGGGGAGAGTGAGAGTGAAAGTGAGAGGAAATGAAAGATGAGGGGGGGAGTTGAGGGAAAAATTCCTGAAAAATTACTTTTTTATGATTATATCGGTAATAATCCCGCAAAAGGTGGATTATTCAGAGCGGGTTCCATGGACAACGGGGATGGAATAGCTGTTGGGTGGTTAGGACACCCTGTTTTTAGAGATAAAGAAGGGCGCGAACTTTTTGTATGCCGTATGCCGACCTTTTTTGAAACATTTCCCGTTGTTTTGGTAGACGAAGACGGAATTGTTAGAGCCGATGTTCCTTTTCGAAGAGTAGAATCGAAGTATAGTGTTGAACAGGTCGGTGTAACTGTTGAGTTCTATGGCGGTGAACTCAATGGAGTCAGTTATAGTGATCCTGCTACTGTGAAAAAATATGCTAGACGTGCTCAATTGGGTGAAATTTTTGAATTAGATCGTGCTACTTTGAAATCCGATGGGGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACTTTTGGGCATGCTTCGTTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTCTTGCTGGGATTGACCCAGATTTGGACGCTCAAGTAG

mRNA sequence

TGTGTCAAAGTTGAAGGGCTGATTCTAAAATCAATTTCCTTCAAACAATGGGTAAAGAGGAGAGTATTACCATATGGTCTGACACATTCAAAATTTCAATTTCCTCGTACTTGTTCAGTTTCTGAAAGTAATCTTCATAGAACTCCTGGAATACTGTCAAACGATCGTTTAAAAAGTGTTGCCGTGGTCGGCGACAAGGTTAACGGTGGAAAACGTCGCCGACAAGCTGTACAGACTGGCCAGACATCACGAGAAACGCGAGCGGGTTCCATGGACAACGGGGATGGAATAGCTGTTGGGTGGTTAGGACACCCTGTTTTTAGAGATAAAGAAGGGCGCGAACTTTTTGTATGCCGTATGCCGACCTTTTTTGAAACATTTCCCGTTGTTTTGGTAGACGAAGACGGAATTGTTAGAGCCGATGTTCCTTTTCGAAGAGTAGAATCGAAGTATAGTGTTGAACAGGTCGGTGTAACTGTTGAGTTCTATGGCGGTGAACTCAATGGAGTCAGTTATAGTGATCCTGCTACTGTGAAAAAATATGCTAGACGTGCTCAATTGGGTGAAATTTTTGAATTAGATCGTGCTACTTTGAAATCCGATGGGGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACTTTTGGGCATGCTTCGTTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTCTTGCTGGGATTGACCCAGATTTGGACGCTCAAGTAG

Coding sequence (CDS)

TGTGTCAAAGTTGAAGGGCTGATTCTAAAATCAATTTCCTTCAAACAATGGGTAAAGAGGAGAGTATTACCATATGGTCTGACACATTCAAAATTTCAATTTCCTCGTACTTGTTCAGTTTCTGAAAGTAATCTTCATAGAACTCCTGGAATACTGTCAAACGATCGTTTAAAAAGTGTTGCCGTGGTCGGCGACAAGGTTAACGGTGGAAAACGTCGCCGACAAGCTGTACAGACTGGCCAGACATCACGAGAAACGCGAGCGGGTTCCATGGACAACGGGGATGGAATAGCTGTTGGGTGGTTAGGACACCCTGTTTTTAGAGATAAAGAAGGGCGCGAACTTTTTGTATGCCGTATGCCGACCTTTTTTGAAACATTTCCCGTTGTTTTGGTAGACGAAGACGGAATTGTTAGAGCCGATGTTCCTTTTCGAAGAGTAGAATCGAAGTATAGTGTTGAACAGGTCGGTGTAACTGTTGAGTTCTATGGCGGTGAACTCAATGGAGTCAGTTATAGTGATCCTGCTACTGTGAAAAAATATGCTAGACGTGCTCAATTGGGTGAAATTTTTGAATTAGATCGTGCTACTTTGAAATCCGATGGGGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACTTTTGGGCATGCTTCGTTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTCTTGCTGGGATTGACCCAGATTTGGACGCTCAAGTAG

Protein sequence

CVKVEGLILKSISFKQWVKRRVLPYGLTHSKFQFPRTCSVSESNLHRTPGILSNDRLKSVAVVGDKVNGGKRRRQAVQTGQTSRETRAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGLTQIWTLK

Homology

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BLAST of CaUC08G144050 vs. NCBI nr
Match: YP_009669012.1 (photosystem II 47 kDa protein [Galphimia angustifolia] >QCW94011.1 photosystem II 47 kDa protein [Galphimia angustifolia])

HSP 1 Score: 315.8 bits (808), Expect = 3.2e-82
Identity = 152/157 (96.82%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 87  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRR 146
           RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR
Sbjct: 326 RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDEDGIVRADVPFRR 385

Query: 147 VESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 206
            ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS
Sbjct: 386 AESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 445

Query: 207 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL 244
           SPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Sbjct: 446 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGI 482

[Close]

BLAST of CaUC08G144050 vs. NCBI nr
Match: AFU94310.1 (PsbB, partial [Byrsonima crassifolia])

HSP 1 Score: 315.8 bits (808), Expect = 3.2e-82
Identity = 152/157 (96.82%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 87  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRR 146
           RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR
Sbjct: 324 RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDEDGIVRADVPFRR 383

Query: 147 VESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 206
            ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS
Sbjct: 384 AESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 443

Query: 207 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL 244
           SPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Sbjct: 444 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGI 480

[Close]

BLAST of CaUC08G144050 vs. NCBI nr
Match: YP_009469276.1 (photosystem II CP47 chlorophyll apoprotein [Byrsonima coccolobifolia] >YP_009469364.1 photosystem II 47 kDa protein [Byrsonima crassifolia] >AVD96503.1 photosystem II CP47 chlorophyll apoprotein [Byrsonima coccolobifolia] >AVD96591.1 photosystem II 47 kDa protein [Byrsonima crassifolia])

HSP 1 Score: 315.8 bits (808), Expect = 3.2e-82
Identity = 152/157 (96.82%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 87  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRR 146
           RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR
Sbjct: 326 RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDEDGIVRADVPFRR 385

Query: 147 VESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 206
            ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS
Sbjct: 386 AESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 445

Query: 207 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL 244
           SPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Sbjct: 446 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGI 482

[Close]

BLAST of CaUC08G144050 vs. NCBI nr
Match: YP_009486654.1 (photosystem II CP47 chlorophyll apoprotein [Bauhinia binata] >YP_009486999.1 photosystem II CP47 chlorophyll apoprotein [Lysiphyllum hookeri] >AWB12877.1 photosystem II CP47 chlorophyll apoprotein [Bauhinia binata] >AWB13222.1 photosystem II CP47 chlorophyll apoprotein [Lysiphyllum hookeri])

HSP 1 Score: 315.5 bits (807), Expect = 4.2e-82
Identity = 151/157 (96.18%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 87  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRR 146
           RAGSMDNGDGIAVGWLGHP+FRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR
Sbjct: 326 RAGSMDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDEDGIVRADVPFRR 385

Query: 147 VESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 206
            ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS
Sbjct: 386 AESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 445

Query: 207 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL 244
           SPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Sbjct: 446 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGI 482

[Close]

BLAST of CaUC08G144050 vs. NCBI nr
Match: AFU94313.1 (PsbB, partial [Centroplacus glaucinus])

HSP 1 Score: 315.5 bits (807), Expect = 4.2e-82
Identity = 151/157 (96.18%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 87  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRR 146
           RAGSMDNGDGIAVGWLGHP+FRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR
Sbjct: 319 RAGSMDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDEDGIVRADVPFRR 378

Query: 147 VESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 206
            ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS
Sbjct: 379 AESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 438

Query: 207 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL 244
           SPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Sbjct: 439 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGI 475

[Close]

BLAST of CaUC08G144050 vs. ExPASy Swiss-Prot
Match: A9LYC6 (Photosystem II CP47 reaction center protein OS=Acorus americanus OX=263995 GN=psbB PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.7e-84
Identity = 151/157 (96.18%), Postives = 152/157 (96.82%), Query Frame = 0


Query: 87  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRR 146
           RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVD DGIVRADVPFRR
Sbjct: 326 RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRR 385

Query: 147 VESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 206
            ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS
Sbjct: 386 AESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 445

Query: 207 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL 244
           SPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Sbjct: 446 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGI 482

[Close]

BLAST of CaUC08G144050 vs. ExPASy Swiss-Prot
Match: Q3V508 (Photosystem II CP47 reaction center protein OS=Acorus calamus OX=4465 GN=psbB PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.7e-84
Identity = 151/157 (96.18%), Postives = 152/157 (96.82%), Query Frame = 0


Query: 87  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRR 146
           RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVD DGIVRADVPFRR
Sbjct: 326 RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRR 385

Query: 147 VESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 206
            ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS
Sbjct: 386 AESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 445

Query: 207 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL 244
           SPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Sbjct: 446 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGI 482

[Close]

BLAST of CaUC08G144050 vs. ExPASy Swiss-Prot
Match: Q2QD63 (Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.7e-84
Identity = 151/157 (96.18%), Postives = 152/157 (96.82%), Query Frame = 0


Query: 87  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRR 146
           RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVD DGIVRADVPFRR
Sbjct: 326 RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRR 385

Query: 147 VESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 206
            ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS
Sbjct: 386 AESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 445

Query: 207 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL 244
           SPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Sbjct: 446 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGI 482

[Close]

BLAST of CaUC08G144050 vs. ExPASy Swiss-Prot
Match: P05641 (Photosystem II CP47 reaction center protein OS=Zea mays OX=4577 GN=psbB PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.7e-84
Identity = 150/157 (95.54%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 87  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRR 146
           RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVDE+GIVRADVPFRR
Sbjct: 326 RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDEEGIVRADVPFRR 385

Query: 147 VESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 206
            ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS
Sbjct: 386 AESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 445

Query: 207 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL 244
           SPRGWFTFGHA+FALLFFFGHIWHGARTLFRDV  G+
Sbjct: 446 SPRGWFTFGHATFALLFFFGHIWHGARTLFRDVFAGI 482

[Close]

BLAST of CaUC08G144050 vs. ExPASy Swiss-Prot
Match: Q6L376 (Photosystem II CP47 reaction center protein OS=Saccharum hybrid OX=15819 GN=psbB PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.7e-84
Identity = 150/157 (95.54%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 87  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRR 146
           RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVDE+GIVRADVPFRR
Sbjct: 326 RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDEEGIVRADVPFRR 385

Query: 147 VESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 206
            ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS
Sbjct: 386 AESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 445

Query: 207 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL 244
           SPRGWFTFGHA+FALLFFFGHIWHGARTLFRDV  G+
Sbjct: 446 SPRGWFTFGHATFALLFFFGHIWHGARTLFRDVFAGI 482

[Close]

BLAST of CaUC08G144050 vs. ExPASy TrEMBL
Match: A0A2L1IPB9 (Photosystem II CP47 reaction center protein OS=Byrsonima crassifolia OX=4270 GN=psbB PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.6e-82
Identity = 152/157 (96.82%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 87  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRR 146
           RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR
Sbjct: 326 RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDEDGIVRADVPFRR 385

Query: 147 VESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 206
            ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS
Sbjct: 386 AESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 445

Query: 207 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL 244
           SPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Sbjct: 446 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGI 482

[Close]

BLAST of CaUC08G144050 vs. ExPASy TrEMBL
Match: K4K7T0 (Photosystem II CP47 reaction center protein (Fragment) OS=Byrsonima crassifolia OX=4270 GN=psbB PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.6e-82
Identity = 152/157 (96.82%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 87  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRR 146
           RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR
Sbjct: 324 RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDEDGIVRADVPFRR 383

Query: 147 VESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 206
            ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS
Sbjct: 384 AESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 443

Query: 207 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL 244
           SPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Sbjct: 444 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGI 480

[Close]

BLAST of CaUC08G144050 vs. ExPASy TrEMBL
Match: A0A2L1IP31 (Photosystem II CP47 reaction center protein OS=Byrsonima coccolobifolia OX=1027102 GN=psbB PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.6e-82
Identity = 152/157 (96.82%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 87  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRR 146
           RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR
Sbjct: 326 RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDEDGIVRADVPFRR 385

Query: 147 VESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 206
            ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS
Sbjct: 386 AESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 445

Query: 207 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL 244
           SPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Sbjct: 446 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGI 482

[Close]

BLAST of CaUC08G144050 vs. ExPASy TrEMBL
Match: A0A4Y5PPK6 (Photosystem II CP47 reaction center protein OS=Galphimia angustifolia OX=1561780 GN=psbB PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.6e-82
Identity = 152/157 (96.82%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 87  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRR 146
           RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR
Sbjct: 326 RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDEDGIVRADVPFRR 385

Query: 147 VESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 206
            ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS
Sbjct: 386 AESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 445

Query: 207 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL 244
           SPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Sbjct: 446 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGI 482

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BLAST of CaUC08G144050 vs. ExPASy TrEMBL
Match: A0A6C0RVX6 (Photosystem II CP47 reaction center protein OS=Daphne genkwa OX=1477590 GN=psbB PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 2.0e-82
Identity = 151/157 (96.18%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 87  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRR 146
           RAGSMDNGDGIAVGWLGHP+FRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR
Sbjct: 326 RAGSMDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDEDGIVRADVPFRR 385

Query: 147 VESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 206
            ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS
Sbjct: 386 AESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 445

Query: 207 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL 244
           SPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Sbjct: 446 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGI 482

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BLAST of CaUC08G144050 vs. TAIR 10
Match: ATCG00680.1 (photosystem II reaction center protein B )

HSP 1 Score: 311.2 bits (796), Expect = 7.4e-85
Identity = 150/157 (95.54%), Postives = 152/157 (96.82%), Query Frame = 0


Query: 87  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRR 146
           RAGSMDNGDGIAVGWLGHPVFR+KEGRELFV RMPTFFETFPVVLVD DGIVRADVPFRR
Sbjct: 326 RAGSMDNGDGIAVGWLGHPVFRNKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRR 385

Query: 147 VESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 206
            ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS
Sbjct: 386 AESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRS 445

Query: 207 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL 244
           SPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Sbjct: 446 SPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGI 482

The following BLAST results are available for this feature:

BLAST of CaUC08G144050 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009669012.1	3.2e-82	96.82	photosystem II 47 kDa protein [Galphimia angustifolia] >QCW94011.1 photosystem I...	[more]
AFU94310.1	3.2e-82	96.82	PsbB, partial [Byrsonima crassifolia]	[more]
YP_009469276.1	3.2e-82	96.82	photosystem II CP47 chlorophyll apoprotein [Byrsonima coccolobifolia] >YP_009469...	[more]
YP_009486654.1	4.2e-82	96.18	photosystem II CP47 chlorophyll apoprotein [Bauhinia binata] >YP_009486999.1 pho...	[more]
AFU94313.1	4.2e-82	96.18	PsbB, partial [Centroplacus glaucinus]	[more]

BLAST of CaUC08G144050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9LYC6	2.7e-84	96.18	Photosystem II CP47 reaction center protein OS=Acorus americanus OX=263995 GN=ps...	[more]
Q3V508	2.7e-84	96.18	Photosystem II CP47 reaction center protein OS=Acorus calamus OX=4465 GN=psbB PE...	[more]
Q2QD63	2.7e-84	96.18	Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB P...	[more]
P05641	2.7e-84	95.54	Photosystem II CP47 reaction center protein OS=Zea mays OX=4577 GN=psbB PE=3 SV=...	[more]
Q6L376	2.7e-84	95.54	Photosystem II CP47 reaction center protein OS=Saccharum hybrid OX=15819 GN=psbB...	[more]

BLAST of CaUC08G144050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2L1IPB9	1.6e-82	96.82	Photosystem II CP47 reaction center protein OS=Byrsonima crassifolia OX=4270 GN=...	[more]
K4K7T0	1.6e-82	96.82	Photosystem II CP47 reaction center protein (Fragment) OS=Byrsonima crassifolia ...	[more]
A0A2L1IP31	1.6e-82	96.82	Photosystem II CP47 reaction center protein OS=Byrsonima coccolobifolia OX=10271...	[more]
A0A4Y5PPK6	1.6e-82	96.82	Photosystem II CP47 reaction center protein OS=Galphimia angustifolia OX=1561780...	[more]
A0A6C0RVX6	2.0e-82	96.18	Photosystem II CP47 reaction center protein OS=Daphne genkwa OX=1477590 GN=psbB ...	[more]

BLAST of CaUC08G144050 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00680.1	7.4e-85	95.54	photosystem II reaction center protein B	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.680.10	Photosystem II CP47 reaction center protein	coord: 83..205 e-value: 2.8E-68 score: 231.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..89
None	No IPR available	PANTHER	PTHR33180:SF17	PHOTOSYSTEM II CP47 REACTION CENTER PROTEIN	coord: 87..243
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 86..243 e-value: 4.5E-75 score: 253.3
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 87..243
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 86..246

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC08G144050.1	CaUC08G144050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity