CaUC08G143640 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC08G143640
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionBnaAnng22160D protein
LocationCiama_Chr08: 8276910 .. 8277128 (-)
RNA-Seq ExpressionCaUC08G143640
SyntenyCaUC08G143640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGGATCCCGCGAACCACCGAGTCTTTGAACGCAAGTTGCGCCCGGAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCTGCCCCCCCACACAACACCCCACGCGGGCTCGTTGCGTAGGCAGGGGCACACGCTGGCCTCCCGTGCGCACCGTCGTGCGGATGGCTTAA

mRNA sequence

ATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGGATCCCGCGAACCACCGAGTCTTTGAACGCAAGTTGCGCCCGGAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCTGCCCCCCCACACAACACCCCACGCGGGCTCGTTGCGTAGGCAGGGGCACACGCTGGCCTCCCGTGCGCACCGTCGTGCGGATGGCTTAA

Coding sequence (CDS)

ATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGGATCCCGCGAACCACCGAGTCTTTGAACGCAAGTTGCGCCCGGAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCTGCCCCCCCACACAACACCCCACGCGGGCTCGTTGCGTAGGCAGGGGCACACGCTGGCCTCCCGTGCGCACCGTCGTGCGGATGGCTTAA

Protein sequence

MKNVAKCDTWCELQDPANHRVFERKLRPEPSGRGHVCLGVTHRCPPTQHPTRARCVGRGTRWPPVRTVVRMA
Homology
BLAST of CaUC08G143640 vs. NCBI nr
Match: KAG2411222.1 (hypothetical protein I3760_Q020200 [Carya illinoinensis])

HSP 1 Score: 110.5 bits (275), Expect = 5.9e-21
Identity = 51/66 (77.27%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 1  MKNVAKCDTWCELQDPANHRVFERKLRPEPSGRGHVCLGVTHRCPPTQHPTRARCV-GRG 60
          MKNVAKCDTWCELQ+PANHRVFERKLRP+P GRGHVCLGVTHRCP   HP  +  V G G
Sbjct: 1  MKNVAKCDTWCELQNPANHRVFERKLRPKPFGRGHVCLGVTHRCP---HPNTSYDVYGAG 60

Query: 61 TRWPPV 66
            WPPV
Sbjct: 61 RNWPPV 63

BLAST of CaUC08G143640 vs. NCBI nr
Match: KAG2411239.1 (hypothetical protein I3760_Q018500 [Carya illinoinensis])

HSP 1 Score: 109.0 bits (271), Expect = 1.7e-20
Identity = 49/65 (75.38%), Postives = 51/65 (78.46%), Query Frame = 0

Query: 1  MKNVAKCDTWCELQDPANHRVFERKLRPEPSGRGHVCLGVTHRCPPTQHPTRARCVGRGT 60
          MKNVAKCDTWCELQ+PANHRVFERKLRP+P GRGHVCLGVTHRCP   H       G G 
Sbjct: 1  MKNVAKCDTWCELQNPANHRVFERKLRPKPFGRGHVCLGVTHRCP---HQHSYDVYGAGR 60

Query: 61 RWPPV 66
           WPPV
Sbjct: 61 NWPPV 62

BLAST of CaUC08G143640 vs. NCBI nr
Match: TKY53825.1 (hypothetical protein E2542_SST25368 [Spatholobus suberectus])

HSP 1 Score: 106.7 bits (265), Expect = 8.6e-20
Identity = 49/72 (68.06%), Postives = 52/72 (72.22%), Query Frame = 0

Query: 1  MKNVAKCDTWCELQDPANHRVFERKLRPEPSGRGHVCLGVTHRCPPTQHPTRARCVGRGT 60
          MKNVAKCDTWCELQ+P NHRVFERKLRP+P GRGH CLGVTHRCPP      A  V  G 
Sbjct: 1  MKNVAKCDTWCELQNPVNHRVFERKLRPKPLGRGHACLGVTHRCPP------ASVVAEGV 60

Query: 61 RWPPVRTVVRMA 73
           W P   V R+A
Sbjct: 61 CWLPASAVSRLA 66

BLAST of CaUC08G143640 vs. NCBI nr
Match: TKY45628.1 (hypothetical protein E2542_SST30378 [Spatholobus suberectus] >TKY53828.1 hypothetical protein E2542_SST25371 [Spatholobus suberectus])

HSP 1 Score: 106.7 bits (265), Expect = 8.6e-20
Identity = 49/72 (68.06%), Postives = 52/72 (72.22%), Query Frame = 0

Query: 1  MKNVAKCDTWCELQDPANHRVFERKLRPEPSGRGHVCLGVTHRCPPTQHPTRARCVGRGT 60
          MKNVAKCDTWCELQ+P NHRVFERKLRP+P GRGH CLGVTHRCPP      A  V  G 
Sbjct: 1  MKNVAKCDTWCELQNPVNHRVFERKLRPKPLGRGHACLGVTHRCPP------ASVVAEGV 60

Query: 61 RWPPVRTVVRMA 73
           W P   V R+A
Sbjct: 61 CWLPASAVSRLA 66

BLAST of CaUC08G143640 vs. NCBI nr
Match: KAG8611767.1 (hypothetical protein MANES_S026816v8 [Manihot esculenta])

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-19
Identity = 51/66 (77.27%), Postives = 53/66 (80.30%), Query Frame = 0

Query: 1   MKNVAKCDTWCELQDPANHRVFERKLRPEPSGRGHVCLGVTHRCPPTQHPTRARCVGR-G 60
           MKN AKCDTWCELQ+PANHRVFERKLRP+PSGRGHVCLGVT   PPT  P   R  GR G
Sbjct: 844 MKNAAKCDTWCELQNPANHRVFERKLRPKPSGRGHVCLGVTQPSPPTPSP---RGGGRGG 903

Query: 61  TRWPPV 66
            RWPPV
Sbjct: 904 GRWPPV 906

BLAST of CaUC08G143640 vs. ExPASy TrEMBL
Match: A0A2Z6SHB0 (Uncharacterized protein OS=Rhizophagus clarus OX=94130 GN=RclHR1_00930028 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-19
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 0

Query: 1  MKNVAKCDTWCELQDPANHRVFERKLRPEPSGRGHVCLGVTHRCPPTQHPTRARCVGRGT 60
          MKNVAKCDTWCELQ+P NHRVFERKLRP+P G GHVCLGVTHR  P Q   R   + RG 
Sbjct: 1  MKNVAKCDTWCELQNPVNHRVFERKLRPKPLGPGHVCLGVTHRVAPDQTSPREIYLFRGG 60

Query: 61 RWPPV 66
           WPPV
Sbjct: 61 NWPPV 65

BLAST of CaUC08G143640 vs. ExPASy TrEMBL
Match: V4UD02 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029524mg PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.7e-19
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 1  MKNVAKCDTWCELQDPANHRVFERKLRPEPSGRGHVCLGVTHRCPPTQHPTRARCVGRGT 60
          MKNVAKCDTWCELQ+P NHRVFERKLRP+P GRGHVCLGVTHRCP     T+A   G G 
Sbjct: 17 MKNVAKCDTWCELQNPVNHRVFERKLRPKPLGRGHVCLGVTHRCPTPPPQTKAGAPGCGR 76

Query: 61 R 62
          R
Sbjct: 77 R 77

BLAST of CaUC08G143640 vs. ExPASy TrEMBL
Match: M1D9E9 (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-18
Identity = 47/66 (71.21%), Postives = 50/66 (75.76%), Query Frame = 0

Query: 1  MKNVAKCDTWCELQDPANHRVFERKLRPEPSGRGHVCLGVTHRCPPTQHPTRARCVGRGT 60
          MKNVAKCDTWCELQ+P NHRVFERKLRP+P GRGHVCLGVTHR  P       R +  G 
Sbjct: 1  MKNVAKCDTWCELQNPVNHRVFERKLRPKPLGRGHVCLGVTHRVAP-------RTLRGGG 59

Query: 61 RWPPVR 67
           WPPVR
Sbjct: 61 SWPPVR 59

BLAST of CaUC08G143640 vs. ExPASy TrEMBL
Match: M1DSR7 (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-18
Identity = 47/66 (71.21%), Postives = 50/66 (75.76%), Query Frame = 0

Query: 1  MKNVAKCDTWCELQDPANHRVFERKLRPEPSGRGHVCLGVTHRCPPTQHPTRARCVGRGT 60
          MKNVAKCDTWCELQ+P NHRVFERKLRP+P GRGHVCLGVTHR  P       R +  G 
Sbjct: 1  MKNVAKCDTWCELQNPVNHRVFERKLRPKPLGRGHVCLGVTHRVAP-------RTLRGGG 59

Query: 61 RWPPVR 67
           WPPVR
Sbjct: 61 SWPPVR 59

BLAST of CaUC08G143640 vs. ExPASy TrEMBL
Match: U5FGY4 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G132300 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.7e-18
Identity = 49/79 (62.03%), Postives = 54/79 (68.35%), Query Frame = 0

Query: 1  MKNVAKCDTWCELQDPANHRVFERKLRPEPSGRGHVCLGVTHRCPPTQHPTRA------- 60
          MKNVAKCDTWCELQ+P NHRVFERKLRP P GRGHVCLGVTHR P +   TRA       
Sbjct: 1  MKNVAKCDTWCELQNPVNHRVFERKLRPRPLGRGHVCLGVTHRRPHSPRLTRAGADTGLP 60

Query: 61 RCVGRGTRWPPVRTVVRMA 73
          R   RG  WP + +   +A
Sbjct: 61 RAPARG--WPKIESSATVA 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG2411222.15.9e-2177.27hypothetical protein I3760_Q020200 [Carya illinoinensis][more]
KAG2411239.11.7e-2075.38hypothetical protein I3760_Q018500 [Carya illinoinensis][more]
TKY53825.18.6e-2068.06hypothetical protein E2542_SST25368 [Spatholobus suberectus][more]
TKY45628.18.6e-2068.06hypothetical protein E2542_SST30378 [Spatholobus suberectus] >TKY53828.1 hypothe... [more]
KAG8611767.11.1e-1977.27hypothetical protein MANES_S026816v8 [Manihot esculenta][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2Z6SHB01.6e-1972.31Uncharacterized protein OS=Rhizophagus clarus OX=94130 GN=RclHR1_00930028 PE=4 S... [more]
V4UD022.7e-1975.41Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029524mg PE=4 ... [more]
M1D9E91.3e-1871.21Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1[more]
M1DSR71.3e-1871.21Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1[more]
U5FGY48.7e-1862.03Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G132300 PE=4 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33220BNAA09G04420D PROTEINcoord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC08G143640.1CaUC08G143640.1mRNA