CaUC08G143350 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAAGAGCAAATCATTTCCCAAGTACTCATCCTCAACCTCGGGCGAGTTTGGTTTCCAAACCCGATCCAACTCATACAATTTCAATGGCCCGACCGCGAAGGCAACTGGGTTCTCGACCTCGGCCGATCCCGAGCTCCAAAGGAAGAGAAGAATTGCATCTTATAATGTTTTCAACATGGAAAACAAAGTAAAATCCAGTGTAAAGAACAGCTTCAAGTGGATCAAAACTAAGTTTAGTGACATTCGCTATGGTTTGTGAGTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTTTGATCTTTATGTAAACAGTTTGGCATTTTCTGTCTCTGAAGACTTGGAACCAAATTCAAGATATAATTAAAGAGTTTGGAAGGTGTGTGTTTGGCTGTGGCTTTTGTTTCCTCATGCAAATATATAAGCCTTGTGTTGCAACATATACATTCACCTCTAATTTTAGTGATCTTATTTTTGCTGTTTGCTTTTGCGCTTTTTTTTTTTTTTTTATATTATTTTTTTTAATTGTTTATTTTAGGTTAAATTTTAAAGATACTCCTCTTGAGTGGTTTCAATTATAGCTGTGAACTTATAAACTTTTTATAAAGTTTGAAGTTTGTTGCAAAATAATCTTGGTACCATAAAAGAAAGAGTATAAATTTATCTGCTTATGTAAACTACACACATACATGGAAAAGAATAATAATGGTACTTAAAACATTTGTGAACCATAGTTGTTATCTTCTTTCTCCTTTCAACCTCAAGCCAATCAATTTTCTATTTTTCCGTTAATGATTTTTTCATTAACCCTAACCTCTGAGTTACTCTATGTACGTAATTAGATTTGTTTATTTAAGTAACAAATAAGCAAGTACATACTTTCCCATCCATAAATTTAACAATAGAAACTTTCCCAGGGTGGTTTTAGAAAAAAAGAATCAAACTTCAAGTGTTTATATGAACATTTTCAAAGTTTATGAAGATGATTGAATCCACAGAATTTTTGGTAACTTAACCTTTATTTTAAATTATATGCCTTTTTAAATACATATTATAAAAATAGTTCCTGGAAGGGATTGAATAAACAATAAGTTGGAGTGAGTTGAAAGTGAGTAAAATTTTACATTTTTTTTAAAATCTTCATTATAGTTGTAGTAATGCAAATTAATAAATATAGACACAATACACTATTTTTTTATTTTTTTTCTCGGTTGTTTATGATTTTATTTGGTGTAATATGTAAATAGAAGGTCTGGCAAAATAAAATTAGGGTTGTTTTCAAATATAACAAAATTAACCAAACTATTTACAAATATAAAAAAATTTTACTATCTATTCGTGATAAACTGTGATAAACTTCTATCGCGACGGATAGACAATATAATTTTTTTATATTTATGAATAGTTTGATGTTTTTTCTATTTATAATAAAATTTCTATAAAATTATATATCTTAACAATTTTTTTCTATTGTACATTTTCTTAATAGACAGTAGTGGGAGATTTGAGTTACAAACTTCTCAATCGCTAACATAAGCTATATGTCAAATTGAATTATGCTTATTTTGATTTTTCTACGGTACCTTTTCATAACGCCAACAATTTCAATGTTTATTTGTTATCCATGACAAATGACAATTCAATAGAAAAATCTAATTCGGTTTACATTTTTCAATCTAAATTTATAACTTTGCATTATTTATCTACTTATTTTAAAATATGTGTATTTCTAATCTATTTTTATGATTCAATCAAAATAAACGAAAGTTTAGATTGGATATTGGAGTATATTCTTTTTCATTTTTATCCCCTTAATGCAAATGAAAAGTTATTTGAAAAAAAGGAAAAAAAGAAAAGAAAAAGTTAAAGACTTTTGTTCACATTTTCAGGCGCTTTATGAACTATGAAGATTCCTTGCCAAAAATGTGTCATTGA ATGGAGAAGAGCAAATCATTTCCCAAGTACTCATCCTCAACCTCGGGCGAGTTTGGTTTCCAAACCCGATCCAACTCATACAATTTCAATGGCCCGACCGCGAAGGCAACTGGGTTCTCGACCTCGGCCGATCCCGAGCTCCAAAGGAAGAGAAGAATTGCATCTTATAATGTTTTCAACATGGAAAACAAAGTAAAATCCAGTGTAAAGAACAGCTTCAAGTGGATCAAAACTAAGTTTAGTGACATTCGCTATGGTTTGCGCTTTATGAACTATGAAGATTCCTTGCCAAAAATGTGTCATTGA ATGGAGAAGAGCAAATCATTTCCCAAGTACTCATCCTCAACCTCGGGCGAGTTTGGTTTCCAAACCCGATCCAACTCATACAATTTCAATGGCCCGACCGCGAAGGCAACTGGGTTCTCGACCTCGGCCGATCCCGAGCTCCAAAGGAAGAGAAGAATTGCATCTTATAATGTTTTCAACATGGAAAACAAAGTAAAATCCAGTGTAAAGAACAGCTTCAAGTGGATCAAAACTAAGTTTAGTGACATTCGCTATGGTTTGCGCTTTATGAACTATGAAGATTCCTTGCCAAAAATGTGTCATTGA MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGLRFMNYEDSLPKMCH Homology
BLAST of CaUC08G143350 vs. NCBI nr
Match: KGN45893.1 (hypothetical protein Csa_005289 [Cucumis sativus]) HSP 1 Score: 170.6 bits (431), Expect = 6.8e-39 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0
BLAST of CaUC08G143350 vs. NCBI nr
Match: KAA0039168.1 (Mediator of RNA polymerase II transcription subunit 8 [Cucumis melo var. makuwa]) HSP 1 Score: 169.1 bits (427), Expect = 2.0e-38 Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0
BLAST of CaUC08G143350 vs. NCBI nr
Match: XP_023536368.1 (uncharacterized protein LOC111797558 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 162.9 bits (411), Expect = 1.4e-36 Identity = 83/87 (95.40%), Postives = 83/87 (95.40%), Query Frame = 0
BLAST of CaUC08G143350 vs. NCBI nr
Match: XP_022930185.1 (uncharacterized protein LOC111436683 [Cucurbita moschata] >KAG6592294.1 hypothetical protein SDJN03_14640, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025131.1 hypothetical protein SDJN02_13954, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 162.9 bits (411), Expect = 1.4e-36 Identity = 83/87 (95.40%), Postives = 83/87 (95.40%), Query Frame = 0
BLAST of CaUC08G143350 vs. NCBI nr
Match: XP_022974055.1 (uncharacterized protein LOC111472683 [Cucurbita maxima]) HSP 1 Score: 157.5 bits (397), Expect = 5.9e-35 Identity = 81/87 (93.10%), Postives = 81/87 (93.10%), Query Frame = 0
BLAST of CaUC08G143350 vs. ExPASy TrEMBL
Match: A0A0A0K8Y3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017090 PE=4 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 3.3e-39 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0
BLAST of CaUC08G143350 vs. ExPASy TrEMBL
Match: A0A5A7T8F8 (Mediator of RNA polymerase II transcription subunit 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00710 PE=4 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 9.6e-39 Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0
BLAST of CaUC08G143350 vs. ExPASy TrEMBL
Match: A0A6J1EWA0 (uncharacterized protein LOC111436683 OS=Cucurbita moschata OX=3662 GN=LOC111436683 PE=4 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 6.8e-37 Identity = 83/87 (95.40%), Postives = 83/87 (95.40%), Query Frame = 0
BLAST of CaUC08G143350 vs. ExPASy TrEMBL
Match: A0A6J1ICY9 (uncharacterized protein LOC111472683 OS=Cucurbita maxima OX=3661 GN=LOC111472683 PE=4 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 2.9e-35 Identity = 81/87 (93.10%), Postives = 81/87 (93.10%), Query Frame = 0
BLAST of CaUC08G143350 vs. ExPASy TrEMBL
Match: A0A2P5BV48 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_207620 PE=4 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 6.2e-30 Identity = 69/87 (79.31%), Postives = 79/87 (90.80%), Query Frame = 0
BLAST of CaUC08G143350 vs. TAIR 10
Match: AT4G09890.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 86.3 bits (212), Expect = 1.6e-17 Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 0
BLAST of CaUC08G143350 vs. TAIR 10
Match: AT1G72720.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08 Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 0
BLAST of CaUC08G143350 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 55.5 bits (132), Expect = 3.0e-08 Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 0
BLAST of CaUC08G143350 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 49.7 bits (117), Expect = 1.6e-06 Identity = 20/44 (45.45%), Postives = 34/44 (77.27%), Query Frame = 0
BLAST of CaUC08G143350 vs. TAIR 10
Match: AT2G47480.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 48.9 bits (115), Expect = 2.8e-06 Identity = 21/41 (51.22%), Postives = 30/41 (73.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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