CaUC08G143350 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC08G143350
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionProtein of unknown function (DUF3511)
LocationCiama_Chr08: 6617804 .. 6619749 (-)
RNA-Seq ExpressionCaUC08G143350
SyntenyCaUC08G143350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGAGCAAATCATTTCCCAAGTACTCATCCTCAACCTCGGGCGAGTTTGGTTTCCAAACCCGATCCAACTCATACAATTTCAATGGCCCGACCGCGAAGGCAACTGGGTTCTCGACCTCGGCCGATCCCGAGCTCCAAAGGAAGAGAAGAATTGCATCTTATAATGTTTTCAACATGGAAAACAAAGTAAAATCCAGTGTAAAGAACAGCTTCAAGTGGATCAAAACTAAGTTTAGTGACATTCGCTATGGTTTGTGAGTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTTTGATCTTTATGTAAACAGTTTGGCATTTTCTGTCTCTGAAGACTTGGAACCAAATTCAAGATATAATTAAAGAGTTTGGAAGGTGTGTGTTTGGCTGTGGCTTTTGTTTCCTCATGCAAATATATAAGCCTTGTGTTGCAACATATACATTCACCTCTAATTTTAGTGATCTTATTTTTGCTGTTTGCTTTTGCGCTTTTTTTTTTTTTTTTATATTATTTTTTTTAATTGTTTATTTTAGGTTAAATTTTAAAGATACTCCTCTTGAGTGGTTTCAATTATAGCTGTGAACTTATAAACTTTTTATAAAGTTTGAAGTTTGTTGCAAAATAATCTTGGTACCATAAAAGAAAGAGTATAAATTTATCTGCTTATGTAAACTACACACATACATGGAAAAGAATAATAATGGTACTTAAAACATTTGTGAACCATAGTTGTTATCTTCTTTCTCCTTTCAACCTCAAGCCAATCAATTTTCTATTTTTCCGTTAATGATTTTTTCATTAACCCTAACCTCTGAGTTACTCTATGTACGTAATTAGATTTGTTTATTTAAGTAACAAATAAGCAAGTACATACTTTCCCATCCATAAATTTAACAATAGAAACTTTCCCAGGGTGGTTTTAGAAAAAAAGAATCAAACTTCAAGTGTTTATATGAACATTTTCAAAGTTTATGAAGATGATTGAATCCACAGAATTTTTGGTAACTTAACCTTTATTTTAAATTATATGCCTTTTTAAATACATATTATAAAAATAGTTCCTGGAAGGGATTGAATAAACAATAAGTTGGAGTGAGTTGAAAGTGAGTAAAATTTTACATTTTTTTTAAAATCTTCATTATAGTTGTAGTAATGCAAATTAATAAATATAGACACAATACACTATTTTTTTATTTTTTTTCTCGGTTGTTTATGATTTTATTTGGTGTAATATGTAAATAGAAGGTCTGGCAAAATAAAATTAGGGTTGTTTTCAAATATAACAAAATTAACCAAACTATTTACAAATATAAAAAAATTTTACTATCTATTCGTGATAAACTGTGATAAACTTCTATCGCGACGGATAGACAATATAATTTTTTTATATTTATGAATAGTTTGATGTTTTTTCTATTTATAATAAAATTTCTATAAAATTATATATCTTAACAATTTTTTTCTATTGTACATTTTCTTAATAGACAGTAGTGGGAGATTTGAGTTACAAACTTCTCAATCGCTAACATAAGCTATATGTCAAATTGAATTATGCTTATTTTGATTTTTCTACGGTACCTTTTCATAACGCCAACAATTTCAATGTTTATTTGTTATCCATGACAAATGACAATTCAATAGAAAAATCTAATTCGGTTTACATTTTTCAATCTAAATTTATAACTTTGCATTATTTATCTACTTATTTTAAAATATGTGTATTTCTAATCTATTTTTATGATTCAATCAAAATAAACGAAAGTTTAGATTGGATATTGGAGTATATTCTTTTTCATTTTTATCCCCTTAATGCAAATGAAAAGTTATTTGAAAAAAAGGAAAAAAAGAAAAGAAAAAGTTAAAGACTTTTGTTCACATTTTCAGGCGCTTTATGAACTATGAAGATTCCTTGCCAAAAATGTGTCATTGA

mRNA sequence

ATGGAGAAGAGCAAATCATTTCCCAAGTACTCATCCTCAACCTCGGGCGAGTTTGGTTTCCAAACCCGATCCAACTCATACAATTTCAATGGCCCGACCGCGAAGGCAACTGGGTTCTCGACCTCGGCCGATCCCGAGCTCCAAAGGAAGAGAAGAATTGCATCTTATAATGTTTTCAACATGGAAAACAAAGTAAAATCCAGTGTAAAGAACAGCTTCAAGTGGATCAAAACTAAGTTTAGTGACATTCGCTATGGTTTGCGCTTTATGAACTATGAAGATTCCTTGCCAAAAATGTGTCATTGA

Coding sequence (CDS)

ATGGAGAAGAGCAAATCATTTCCCAAGTACTCATCCTCAACCTCGGGCGAGTTTGGTTTCCAAACCCGATCCAACTCATACAATTTCAATGGCCCGACCGCGAAGGCAACTGGGTTCTCGACCTCGGCCGATCCCGAGCTCCAAAGGAAGAGAAGAATTGCATCTTATAATGTTTTCAACATGGAAAACAAAGTAAAATCCAGTGTAAAGAACAGCTTCAAGTGGATCAAAACTAAGTTTAGTGACATTCGCTATGGTTTGCGCTTTATGAACTATGAAGATTCCTTGCCAAAAATGTGTCATTGA

Protein sequence

MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGLRFMNYEDSLPKMCH
Homology
BLAST of CaUC08G143350 vs. NCBI nr
Match: KGN45893.1 (hypothetical protein Csa_005289 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 6.8e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

BLAST of CaUC08G143350 vs. NCBI nr
Match: KAA0039168.1 (Mediator of RNA polymerase II transcription subunit 8 [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 2.0e-38
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPT KATGFSTSADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

BLAST of CaUC08G143350 vs. NCBI nr
Match: XP_023536368.1 (uncharacterized protein LOC111797558 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.9 bits (411), Expect = 1.4e-36
Identity = 83/87 (95.40%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSS SGEF FQTRSNSYNFNGPT KATGFSTS DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTGKATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

BLAST of CaUC08G143350 vs. NCBI nr
Match: XP_022930185.1 (uncharacterized protein LOC111436683 [Cucurbita moschata] >KAG6592294.1 hypothetical protein SDJN03_14640, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025131.1 hypothetical protein SDJN02_13954, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.9 bits (411), Expect = 1.4e-36
Identity = 83/87 (95.40%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSS SGEF FQTRSNSYNFNGPT KATGFSTS DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

BLAST of CaUC08G143350 vs. NCBI nr
Match: XP_022974055.1 (uncharacterized protein LOC111472683 [Cucurbita maxima])

HSP 1 Score: 157.5 bits (397), Expect = 5.9e-35
Identity = 81/87 (93.10%), Postives = 81/87 (93.10%), Query Frame = 0

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSS SGEF FQTRSNSYNFNGPT  ATGFSTS DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRY L
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYSL 87

BLAST of CaUC08G143350 vs. ExPASy TrEMBL
Match: A0A0A0K8Y3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017090 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.3e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

BLAST of CaUC08G143350 vs. ExPASy TrEMBL
Match: A0A5A7T8F8 (Mediator of RNA polymerase II transcription subunit 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00710 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.6e-39
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPT KATGFSTSADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

BLAST of CaUC08G143350 vs. ExPASy TrEMBL
Match: A0A6J1EWA0 (uncharacterized protein LOC111436683 OS=Cucurbita moschata OX=3662 GN=LOC111436683 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.8e-37
Identity = 83/87 (95.40%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSS SGEF FQTRSNSYNFNGPT KATGFSTS DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

BLAST of CaUC08G143350 vs. ExPASy TrEMBL
Match: A0A6J1ICY9 (uncharacterized protein LOC111472683 OS=Cucurbita maxima OX=3661 GN=LOC111472683 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.9e-35
Identity = 81/87 (93.10%), Postives = 81/87 (93.10%), Query Frame = 0

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSS SGEF FQTRSNSYNFNGPT  ATGFSTS DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRY L
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYSL 87

BLAST of CaUC08G143350 vs. ExPASy TrEMBL
Match: A0A2P5BV48 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_207620 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.2e-30
Identity = 69/87 (79.31%), Postives = 79/87 (90.80%), Query Frame = 0

Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKS+SFP+YSS+ SGEFGF+ RSNSYNFNGP  K +GF TS+DPELQRK+RIASYNVF 
Sbjct: 1  MEKSRSFPEYSSAYSGEFGFRERSNSYNFNGPCQKGSGFVTSSDPELQRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          ME KVKSSV+NSFKWIK+KFSDIRYG+
Sbjct: 61 MEGKVKSSVRNSFKWIKSKFSDIRYGV 87

BLAST of CaUC08G143350 vs. TAIR 10
Match: AT4G09890.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-17
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 0

Query: 1  MEKSKSFPKYSSS-TSGEFGF-QTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNV 60
          M+ SKS+ +YSSS ++ EFG+ Q RSNSYNFNGP         + DPE++RK+R+ASYN+
Sbjct: 2  MKGSKSYTEYSSSFSTDEFGYDQNRSNSYNFNGP-------CINTDPEMKRKKRVASYNL 61

Query: 61 FNMENKVKSSVKNSFKWIKTKFSDIRYGLRF 90
          F  E K+KS++KNSFKWIK KFS     +R+
Sbjct: 62 FATEEKLKSTLKNSFKWIKNKFSGDDNSIRY 85

BLAST of CaUC08G143350 vs. TAIR 10
Match: AT1G72720.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 0

Query: 2   EKSKSFP----------KYSSSTSGEFGFQT----RSNSYNFNGPTAKATGFSTSADPEL 61
           EKS+S P           YS+ST   +   T     SN+ +      K  GF    + E+
Sbjct: 27  EKSESEPTNQQPPVMMRSYSTSTYNAYQNPTIVRDDSNNKSKRSNKVKKKGFKGLCEAEI 86

Query: 62  QRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL 88
           QRK+R+ASYNV+ +E +VK S+K SFKW K   S+  YGL
Sbjct: 87  QRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAVYGL 126

BLAST of CaUC08G143350 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 55.5 bits (132), Expect = 3.0e-08
Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 10  YSSSTSGEF-----GFQTRSNSYNFNGPTAKATGFSTS---ADPELQRKRRIASYNVFNM 69
           Y  +  G+F      + TR N+  ++    K+   S S    DPELQRK+R+ASY ++ +
Sbjct: 20  YHGNQGGDFRSYSASYGTRENNI-YDVKKEKSIARSKSWGITDPELQRKKRVASYKMYGV 79

Query: 70  ENKVKSSVKNSFKWIKTKFSDIRYG 87
           E KVK S +NSF+W+K +++ + YG
Sbjct: 80  EGKVKGSFRNSFRWLKQRYTQVVYG 103

BLAST of CaUC08G143350 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 49.7 bits (117), Expect = 1.6e-06
Identity = 20/44 (45.45%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 44  DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL 88
           DPE++RKRR+A Y +++ E K+K +++ S+KWIK + S I +G+
Sbjct: 81  DPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHGI 124

BLAST of CaUC08G143350 vs. TAIR 10
Match: AT2G47480.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 48.9 bits (115), Expect = 2.8e-06
Identity = 21/41 (51.22%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 43  ADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDI 84
           +D E++RK+RIA Y  + +E KVKS++KN F+WIK K   I
Sbjct: 66  SDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQI 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN45893.16.8e-39100.00hypothetical protein Csa_005289 [Cucumis sativus][more]
KAA0039168.12.0e-3898.85Mediator of RNA polymerase II transcription subunit 8 [Cucumis melo var. makuwa][more]
XP_023536368.11.4e-3695.40uncharacterized protein LOC111797558 [Cucurbita pepo subsp. pepo][more]
XP_022930185.11.4e-3695.40uncharacterized protein LOC111436683 [Cucurbita moschata] >KAG6592294.1 hypothet... [more]
XP_022974055.15.9e-3593.10uncharacterized protein LOC111472683 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K8Y33.3e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017090 PE=4 SV=1[more]
A0A5A7T8F89.6e-3998.85Mediator of RNA polymerase II transcription subunit 8 OS=Cucumis melo var. makuw... [more]
A0A6J1EWA06.8e-3795.40uncharacterized protein LOC111436683 OS=Cucurbita moschata OX=3662 GN=LOC1114366... [more]
A0A6J1ICY92.9e-3593.10uncharacterized protein LOC111472683 OS=Cucurbita maxima OX=3661 GN=LOC111472683... [more]
A0A2P5BV486.2e-3079.31Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_207620 PE... [more]
Match NameE-valueIdentityDescription
AT4G09890.11.6e-1753.85Protein of unknown function (DUF3511) [more]
AT1G72720.11.7e-0839.00Protein of unknown function (DUF3511) [more]
AT5G11970.13.0e-0837.65Protein of unknown function (DUF3511) [more]
AT3G05725.11.6e-0645.45Protein of unknown function (DUF3511) [more]
AT2G47480.12.8e-0651.22Protein of unknown function (DUF3511) [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 43..86
e-value: 6.4E-24
score: 83.5
NoneNo IPR availablePANTHERPTHR33193:SF7OS06G0686600 PROTEINcoord: 1..82
NoneNo IPR availablePANTHERPTHR33193DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATEDcoord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC08G143350.1CaUC08G143350.1mRNA