CaUC08G143260 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC08G143260
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr08: 6230220 .. 6230519 (+)
RNA-Seq Expression	CaUC08G143260
Synteny	CaUC08G143260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGCAACAACAGGCTAAAGAAAGCCCACTCATCTTTTTCAATCTTTAGCCTTTTCAAATCTAGAAGGGGTCGAAATGGAGACCACTGCGACCACGGTTGCTCTTGGCCAGATGAGATGCTGAGATCGAGCAAGGTGTGGCCGAGCGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTTGAATCTGAGCGCCAAATTGTTACCGTACCTCCCAATGGAACAAAACCCAATATGTAA

mRNA sequence

ATGGGAGGCAACAACAGGCTAAAGAAAGCCCACTCATCTTTTTCAATCTTTAGCCTTTTCAAATCTAGAAGGGGTCGAAATGGAGACCACTGCGACCACGGTTGCTCTTGGCCAGATGAGATGCTGAGATCGAGCAAGGTGTGGCCGAGCGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTTGAATCTGAGCGCCAAATTGTTACCGTACCTCCCAATGGAACAAAACCCAATATGTAA

Coding sequence (CDS)

ATGGGAGGCAACAACAGGCTAAAGAAAGCCCACTCATCTTTTTCAATCTTTAGCCTTTTCAAATCTAGAAGGGGTCGAAATGGAGACCACTGCGACCACGGTTGCTCTTGGCCAGATGAGATGCTGAGATCGAGCAAGGTGTGGCCGAGCGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTTGAATCTGAGCGCCAAATTGTTACCGTACCTCCCAATGGAACAAAACCCAATATGTAA

Protein sequence

MGGNNRLKKAHSSFSIFSLFKSRRGRNGDHCDHGCSWPDEMLRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQIVTVPPNGTKPNM

Homology

[Close]

BLAST of CaUC08G143260 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 2.7e-40
Identity = 79/97 (81.44%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 3   GNNRLKKAHSSFSIFSLFKSRRGRNGDHCDHGCSWPDEMLRSSKVWPSDEDKPHHWVAEP 62
           G NR KK+HSSFSIFS FKS+RGR GDH DHG +WPDEM RS+KVWPSDEDK HHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQIVTVPPNGTKPNM 100
           GIDRKAKDYIDRIYRNRVFESERQ VT+ PNGTK N+
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CaUC08G143260 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-39
Identity = 81/99 (81.82%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1   MGGNNRLKKAHSSFSIFSLFKSRRGRNGDHCDHGCSWPDEMLRSSKVWPSDEDKPHHWVA 60
           MGGNNR KKAH+SFSIFS FKSRRGR GDHC+H  S  DEM RS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQIVTVPPNGTKPNM 100
           EPGIDRKAKDYIDRIYRNRVFESERQ VT+ PNG K N+
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of CaUC08G143260 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 2.3e-39
Identity = 80/99 (80.81%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1   MGGNNRLKKAHSSFSIFSLFKSRRGRNGDHCDHGCSWPDEMLRSSKVWPSDEDKPHHWVA 60
           MGGNNR KK+HSSFSIFS FKSRRGR GD+C+H  S  DEM RS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQIVTVPPNGTKPNM 100
           EPGIDRKAKDYIDRIYRNRVFESERQ +T+ PNGTK N+
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of CaUC08G143260 vs. NCBI nr
Match: KAG6592306.1 (hypothetical protein SDJN03_14652, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.5 bits (410), Expect = 1.8e-36
Identity = 77/98 (78.57%), Postives = 81/98 (82.65%), Query Frame = 0


Query: 1  MGGNNRLKKAHSSFSIFSLFKSRRGRNGDHCDHGCSWPDEMLRSSKVWPSDEDKPHHWVA 60
          MGGNNR KKAHSSFSIF+ FKS++ R  DHCDH   W DEM RS KVWPSDEDK H WVA
Sbjct: 1  MGGNNRSKKAHSSFSIFNFFKSKKSRKEDHCDHSSCW-DEMPRSGKVWPSDEDKTHRWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVFESERQIVTVPPNGTKPN 99
          EPGIDRKAKDYIDRIYRNRVFESERQ VT+P NG K N
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTLPANGIKLN 97

[Close]

BLAST of CaUC08G143260 vs. NCBI nr
Match: KAG6592308.1 (hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.5 bits (410), Expect = 1.8e-36
Identity = 77/96 (80.21%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1  MGGNNRLKKAHSSFSIFSLFKSRRGRNGDHCDHGCSWPDEMLRSSKVWPSDEDKPHHWVA 60
          MGGNNR KKAHSSFSIF+ FKSRR R  DHCDH   W DE+ RSSK+WPSDEDK H WVA
Sbjct: 1  MGGNNRSKKAHSSFSIFNFFKSRRSRKEDHCDHSGGW-DEIPRSSKIWPSDEDKIHRWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVFESERQIVTVPPNGTK 97
          EPGIDRKAKDYIDRIYRNRVFESERQ VT+P +GTK
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTLPASGTK 95

[Close]

BLAST of CaUC08G143260 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 79/97 (81.44%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 3   GNNRLKKAHSSFSIFSLFKSRRGRNGDHCDHGCSWPDEMLRSSKVWPSDEDKPHHWVAEP 62
           G NR KK+HSSFSIFS FKS+RGR GDH DHG +WPDEM RS+KVWPSDEDK HHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQIVTVPPNGTKPNM 100
           GIDRKAKDYIDRIYRNRVFESERQ VT+ PNGTK N+
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CaUC08G143260 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.5e-40
Identity = 81/99 (81.82%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1   MGGNNRLKKAHSSFSIFSLFKSRRGRNGDHCDHGCSWPDEMLRSSKVWPSDEDKPHHWVA 60
           MGGNNR KKAH+SFSIFS FKSRRGR GDHC+H  S  DEM RS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQIVTVPPNGTKPNM 100
           EPGIDRKAKDYIDRIYRNRVFESERQ VT+ PNG K N+
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of CaUC08G143260 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.5e-40
Identity = 80/97 (82.47%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 3   GNNRLKKAHSSFSIFSLFKSRRGRNGDHCDHGCSWPDEMLRSSKVWPSDEDKPHHWVAEP 62
           G NR KK+HSSFSIFS FKSRRGR GDH DHG +W DEM RS+KVWPSDEDK HHWVAEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQIVTVPPNGTKPNM 100
           GIDRKAKDYIDRIYRNRVFESERQ VT+ PNGTK N+
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CaUC08G143260 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.1e-39
Identity = 80/99 (80.81%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1   MGGNNRLKKAHSSFSIFSLFKSRRGRNGDHCDHGCSWPDEMLRSSKVWPSDEDKPHHWVA 60
           MGGNNR KK+HSSFSIFS FKSRRGR GD+C+H  S  DEM RS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQIVTVPPNGTKPNM 100
           EPGIDRKAKDYIDRIYRNRVFESERQ +T+ PNGTK N+
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of CaUC08G143260 vs. ExPASy TrEMBL
Match: A0A0A0K8V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.7e-33
Identity = 69/91 (75.82%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 3  GNNRLKKAHSSFSIFSLFKSRRGRNGDHCDHGCSWPDEMLRSSKVWPSDEDKPHHWVAEP 62
          G ++ KK+HSSFS FS  KS+  R GDH DHG SW DE  RS KVWPSDEDK HHWVAEP
Sbjct: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61

Query: 63 GIDRKAKDYIDRIYRNRVFESERQIVTVPPN 94
          GIDRKAKDYIDRIYRNRVFESERQ VT+P N
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]

BLAST of CaUC08G143260 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 1  MGGNNRLKKAHSS--FSIFSLFKSRRGRNGDHCDHGCSWPDEMLRSSKVWPSDEDKPHHW 60
          MGG NR   +HSS  FS+FS FK+RR       +   SW D+   + K   SDEDK  +W
Sbjct: 1  MGGKNR---SHSSKRFSLFSFFKTRRSH---RVEADGSW-DDFGYTRKAMASDEDK-RYW 60

Query: 61 VAEPGIDRKAKDYIDRIYRNRVFESERQIVT 90
          VAEPGIDRKA  +I + +  RV ESERQ ++
Sbjct: 61 VAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of CaUC08G143260 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-10
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 36 SWPDEMLRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQIVTVPP 93
          SW D+++ + K W SDEDK  +WVAEPGIDRKA  +I + + +RV ESERQ  T+PP
Sbjct: 16 SW-DDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQ--TLPP 68

The following BLAST results are available for this feature:

BLAST of CaUC08G143260 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45870.1	2.7e-40	81.44	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KGN45869.1	1.3e-39	81.82	hypothetical protein Csa_005516 [Cucumis sativus]	[more]
KAA0035003.1	2.3e-39	80.81	hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343...	[more]
KAG6592306.1	1.8e-36	78.57	hypothetical protein SDJN03_14652, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592308.1	1.8e-36	80.21	hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CaUC08G143260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC08G143260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7Y2	1.3e-40	81.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KAK6	6.5e-40	81.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]
A0A0A0KBW1	6.5e-40	82.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A5A7SWT9	1.1e-39	80.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K8V3	7.7e-33	75.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1	[more]

BLAST of CaUC08G143260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	3.3e-12	48.35	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	1.8e-10	56.14	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..89
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC08G143260.1	CaUC08G143260.1	mRNA