CaUC08G143160 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC08G143160
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	disease resistance protein RGA2-like
Location	Ciama_Chr08: 5938673 .. 5939059 (+)
RNA-Seq Expression	CaUC08G143160
Synteny	CaUC08G143160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAATCTCACCCGATTAAATCATTTGTTAGTTTCTGGATGTTCCCGGCTTCAACTTGGCGAAGGTAGCTTCGAGCGGGAGAAAGTTTCGCATGTACCTGATGTTAACATTCAAGATGAGACTACTAACATGTTCTTGTCTGTAAGTGTGTGAAAAGAAAAAGAAAAACAAACAAAGAATTGCTGTGAAATTGGAAGTTGTGTGAATATGCTTTTGGTGCGTGTTTGTCATCCTTTCTTGAGGTTTCAGCGGGTGATTTGTTGTAGACTCAATTTTCTTTGTATTGCTAGTGATCATGATTTACTATTGCTTGGCATTGTGTTTGTTGTTGTTGATGGTTATTCCAAAGGTACTCATCGATTAACAATTGGTATCAGAGCTTAG

mRNA sequence

ATGTCAAATCTCACCCGATTAAATCATTTGTTAGTTTCTGGATGTTCCCGGCTTCAACTTGGCGAAGGTAGCTTCGAGCGGGAGAAAGTTTCGCATGTACCTGATGTTAACATTCAAGATGAGACTACTAACATGTTCTTGTCTCGGGTGATTTGTTGTAGACTCAATTTTCTTTGTATTGCTAGTGATCATGATTTACTATTGCTTGGCATTGTGTTTGTTGTTGTTGATGGTTATTCCAAAGGTACTCATCGATTAACAATTGGTATCAGAGCTTAG

Coding sequence (CDS)

ATGTCAAATCTCACCCGATTAAATCATTTGTTAGTTTCTGGATGTTCCCGGCTTCAACTTGGCGAAGGTAGCTTCGAGCGGGAGAAAGTTTCGCATGTACCTGATGTTAACATTCAAGATGAGACTACTAACATGTTCTTGTCTCGGGTGATTTGTTGTAGACTCAATTTTCTTTGTATTGCTAGTGATCATGATTTACTATTGCTTGGCATTGTGTTTGTTGTTGTTGATGGTTATTCCAAAGGTACTCATCGATTAACAATTGGTATCAGAGCTTAG

Protein sequence

MSNLTRLNHLLVSGCSRLQLGEGSFEREKVSHVPDVNIQDETTNMFLSRVICCRLNFLCIASDHDLLLLGIVFVVVDGYSKGTHRLTIGIRA

Homology

[Close]

BLAST of CaUC08G143160 vs. NCBI nr
Match: XP_022973478.1 (putative disease resistance protein RGA3 [Cucurbita maxima])

HSP 1 Score: 61.6 bits (148), Expect = 4.0e-06
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1    MSNLTRLNHLLVSGCSRLQLGEGSFEREKVSHVPDV 37
            MSNLT+LNHL V GCSRL++GEG  EREKVSHVP++
Sbjct: 1052 MSNLTKLNHLRVLGCSRLEVGEGGVEREKVSHVPNI 1087

[Close]

BLAST of CaUC08G143160 vs. NCBI nr
Match: XP_023535482.1 (disease resistance protein RGA2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1    MSNLTRLNHLLVSGCSRLQLGEGSFEREKVSHVPDV 37
            MSNLT+LNHL V GCS+L++GEG  EREKVSHVP++
Sbjct: 1048 MSNLTKLNHLRVLGCSQLEVGEGDVEREKVSHVPNI 1083

[Close]

BLAST of CaUC08G143160 vs. NCBI nr
Match: XP_022145225.1 (putative disease resistance protein RGA3 [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 3.4e-05
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 1    MSNLTRLNHLLVSGCSRLQLGEGSFEREKVSHVPDVN 38
            MSNLTRLN L V GCS+++LGEG FER KVSHVP ++
Sbjct: 1083 MSNLTRLNRLEVHGCSQIELGEGGFERAKVSHVPHID 1119

[Close]

BLAST of CaUC08G143160 vs. NCBI nr
Match: XP_023515931.1 (putative disease resistance protein RGA3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.5 bits (140), Expect = 3.4e-05
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1    MSNLTRLNHLLVSGCSRLQLGEGSFEREKVSHVPDV 37
            MSNLTRLN L V  CS+L +GEGS EREKVSHVPDV
Sbjct: 1040 MSNLTRLNRLKVYKCSQLDIGEGSVEREKVSHVPDV 1075

[Close]

BLAST of CaUC08G143160 vs. NCBI nr
Match: XP_023545231.1 (putative disease resistance protein RGA3 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545232.1 putative disease resistance protein RGA3 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.4 bits (137), Expect = 7.6e-05
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1    MSNLTRLNHLLVSGCSRLQLGEGSFEREKVSHVPDVNI 39
            MSNLTRLN L V  CS+L++GEGS EREKVSHVP+V +
Sbjct: 1040 MSNLTRLNRLDVHKCSQLEVGEGSVEREKVSHVPNVRV 1077

[Close]

BLAST of CaUC08G143160 vs. ExPASy TrEMBL
Match: A0A6J1ID61 (putative disease resistance protein RGA3 OS=Cucurbita maxima OX=3661 GN=LOC111472027 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.0e-06
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1    MSNLTRLNHLLVSGCSRLQLGEGSFEREKVSHVPDV 37
            MSNLT+LNHL V GCSRL++GEG  EREKVSHVP++
Sbjct: 1052 MSNLTKLNHLRVLGCSRLEVGEGGVEREKVSHVPNI 1087

[Close]

BLAST of CaUC08G143160 vs. ExPASy TrEMBL
Match: A0A6J1CTV3 (putative disease resistance protein RGA3 OS=Momordica charantia OX=3673 GN=LOC111014729 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-05
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 1    MSNLTRLNHLLVSGCSRLQLGEGSFEREKVSHVPDVN 38
            MSNLTRLN L V GCS+++LGEG FER KVSHVP ++
Sbjct: 1083 MSNLTRLNRLEVHGCSQIELGEGGFERAKVSHVPHID 1119

[Close]

BLAST of CaUC08G143160 vs. ExPASy TrEMBL
Match: A0A6J1F4C4 (putative disease resistance protein RGA3 OS=Cucurbita moschata OX=3662 GN=LOC111440074 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.8e-05
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1   MSNLTRLNHLLVSGCSRLQLGEGSFEREKVSHVPDVNI 39
           MSNLTRLN L V  CS+L++GEGS EREKVSHVP+V +
Sbjct: 407 MSNLTRLNRLDVYKCSQLEVGEGSVEREKVSHVPNVRV 444

[Close]

BLAST of CaUC08G143160 vs. ExPASy TrEMBL
Match: A0A6J1EV92 (putative disease resistance protein RGA3 OS=Cucurbita moschata OX=3662 GN=LOC111438093 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.8e-05
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1   MSNLTRLNHLLVSGCSRLQLGEGSFEREKVSHVPDVNI 39
           MSNLTRLN L V  CS+L++GEGS EREKVSHVP+V +
Sbjct: 400 MSNLTRLNRLDVYKCSQLEVGEGSVEREKVSHVPNVRV 437

[Close]

BLAST of CaUC08G143160 vs. ExPASy TrEMBL
Match: A0A6J1EC27 (disease resistance protein RGA2-like OS=Cucurbita moschata OX=3662 GN=LOC111432690 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.8e-05
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 1   MSNLTRLNHLLVSGCSRLQLGEGSFEREKVSHVPDV 37
           MSNLT+LN L V GCS+L++GEG  EREKVSHVP++
Sbjct: 412 MSNLTKLNRLRVLGCSQLEVGEGDVEREKVSHVPNI 447

The following BLAST results are available for this feature:

BLAST of CaUC08G143160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973478.1	4.0e-06	75.00	putative disease resistance protein RGA3 [Cucurbita maxima]	[more]
XP_023535482.1	1.2e-05	72.22	disease resistance protein RGA2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022145225.1	3.4e-05	70.27	putative disease resistance protein RGA3 [Momordica charantia]	[more]
XP_023515931.1	3.4e-05	77.78	putative disease resistance protein RGA3 [Cucurbita pepo subsp. pepo]	[more]
XP_023545231.1	7.6e-05	71.05	putative disease resistance protein RGA3 isoform X1 [Cucurbita pepo subsp. pepo]...	[more]

BLAST of CaUC08G143160 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC08G143160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ID61	2.0e-06	75.00	putative disease resistance protein RGA3 OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1CTV3	1.7e-05	70.27	putative disease resistance protein RGA3 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1F4C4	4.8e-05	71.05	putative disease resistance protein RGA3 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1EV92	4.8e-05	71.05	putative disease resistance protein RGA3 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1EC27	4.8e-05	69.44	disease resistance protein RGA2-like OS=Cucurbita moschata OX=3662 GN=LOC1114326...	[more]

BLAST of CaUC08G143160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC08G143160.1	CaUC08G143160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
molecular_function	GO:0043531	ADP binding