CaUC08G143110 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC08G143110
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionE3 ubiquitin-protein ligase RNF170
LocationCiama_Chr08: 5796758 .. 5808253 (+)
RNA-Seq ExpressionCaUC08G143110
SyntenyCaUC08G143110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGTCTGGGATCATGGATCACCATTTCAGCCGTGTAAATGCCCCTTATGCCGTCGACAAATCTCTTTATTAGTTCCTTCTGAGGTTTCACCAATTCAGCAAAGTGACCCAGAGGTTGCACGCGTTCTTAACAATATAAGGACTTATAACCGTCATTTTGGTGGCAACTCAACTGGTTTAAGTCAGGTAGTTCTCTTTTTTTGCATAATTTCTGTAATGAACTGCTAGTTAAAGTTATTGTTGAATCTGCTTTGGAACGTGAAAAATGATTTGCCATGAAGAATTGACCACAGAGAGTGAGCATAGGTCAATTGCTAGCGCAGGAAGTGTTATTCTGGTCCAGTGAGAACAATTAGGATCAAGAAACTGAAGTAAATGGCCTAGATAGGTCTCTAGTCTCTTCATATGAGGAGATAATGATAGAGTCATCAACAATAATAAATTAGTTAATTAATTTTTGAAAAGGAAACAAAACTTCTCATTAAGAAAATGAAAAGAGACTAATGCTCAAGGATACATGAAAACAAAGAGACGAAGAGGAAGACAAAGCCTTGAAGGTAGGAAATGGACATTGGACATAGCGTGCTGATTATTCCCCAATTCAAAGCCTTTAGTCTAAGCCCTATTTTCAGCAAGATTCAACATTCTACTAAGGCAATTCAACACAAGAATAATGAATAAAGGGGAAAGGGGATAATGGAGCACCTTGCGGAGAGCCCCTCGAGGAAAGAATATCTTCCATGTAGGATTTTTACATATCAACCTAACTAAGATCCTGCAAATGCAAAAGATAACACCCAAACAAGAAATGGAGCAATGCAAAAAAGGAATATATGTTTATTTCCAGCAATATCAACGATACCAAGCAAAATACCATGAACAAGCAGAATGTAAGCAAACACAATCCTCCAGCCACTTCAAGAGGGCTGGTTCTCTCCTCTATAGCACCCAGCTAACATTCTTCTCCAAGAAGGTTACTACCTGTTTTCCCCCTTACATACCAACATTCCCTGCCACCCATACTCTCAAAATCAAGTCCCACTTCCTTTAACTAACTGTTGGGCATACCAATACCCTTTCTACCCCTGCTACTATAAGTTTTCGACACTTGGGGCCTCACAATTTTCCTTTGATGATAATTGAGAAATTAGCCGAAGAGAGACAACCTCTTATCCTTTTTTTAAAAAATATTTTTTATTTTACTATTTTATTATTTTTTTAAAAAATTTTTTTAAAAAAAGAGACAACCTCTAATCTAAAGCCTTTTACTTCCAGATATTGTTGAGAATGTCCTAATCAACTTTATCGAGAACCTTCCCAGTATCTAACTTTATAACAACCTTGGGTTTTTGCTTTCGCTTCTCATTTACTTCATTTGTAATAAGAGATGCATCAATGATTTGGCGACCGTTTACAAAAATGGATTGATTTTCTGTGATGGTGGATTTAAGGACTTTTCTTAGTTTCTCTAATAGAACTCTAACAATGATCTTATAGAGGTGAGTGGTGAGGCTAATGGCCAAAACCAGGATTTGGCGTCAATCTTGTTGGGGATGAGGCAGATGCAGGTTCTGTTGATGCTAGCATTAGTAATATCATTCTCAAGAAAACCATTGAACACCCTCTTGTTGTCAACCTTGAGAGTGTTCCAGGAGATTTTTTAGTGCCCAAATCATGTACAACTCTATGAATTTTCTCATCCGAGAAAGGGAGTTCCAGCATCATCCTTGTAATAGGGCTGCAATCAATGGAATGAGGCAGAAATTTGTTGCCAGCTTTTTTAGAATAAAGTTGTCGGTAAAAATCTACAAAAGATTTTTACACAGTTATACAGTCAGCTTTTATGTCACTGTCAGTGAGGAGACTCACCCCTGTTCTGGAAAGGATTTCAATGGTTGTGTTCTTTCTACGTTTTGCAGCTACATGACTATGGAAGAAGGCGGAAATTTCATCACCATCAGCTCACTAATTGGATTCACAGTGCTTTCTCCCCATAATCATTTCTTTTGCAGCAATGGATAAAAGGTCAGATCTAATAGCTATGCACCTGTGGATGGAAGTAATATCTAAAGGCCCATTTTCCTCATTTGAGCCCATGACTTTTGACGCGCTAACCGAAGCTGACTTTTTTAGTTAGAGGAGGCCAAATGTGGATGAATTCCAGTCCTTAAGAAATCATTTCAAGCATTTCAATTTCTGCATAAAACCATGACCCAGCCAGTCCACCATGCTGTTTTTGGACCACCAATGTTTGAACATGGGAACAGAATTATGATGTTTCAGCCACGCATTAGCAAATTTTGAATGAAGTAGGACCCCATTTCTCTTTTCCAGTTGATAGGTGAATAGGAACATTTTCGGAGGTAATTTGTTCCAGCCAACTGCTAGAAACTCAAATTTGGATAAGATCCTGTCCGGAATGAGAAATCTATCAATGAAGGTGCAAGAAACAAATTCTCTATTATTGTACCATGTGAGAAGACGGTTTTGCAGTGGGATTTCTTGGAGGCCTGCTGATTGAGTAAAGCGATAAAAAGATACATGGCTCCATAAGTCAACTTCTCCTTTACCACCGATGTTGAAATCCCCACCGAGGATCTAGTTATTGCCATAGATAAGATAAGACATAAAGCTCTTGCCAAAAGGAACCACAGTTAGATGATGAAGATAGGTCATTAATACCTGATGACCAAAAAGCTACAATCATCAGCCAGATTTATGTGGAGGGAAAGGGTGTATGCACCTTCAATAGCATCCAAAATAGCAAAAGATGGATCATTCCAAAGGATGAGAATACCACCCAAAGAGCCAACGACATTAAGGGAAGACCAACCAACATTCTTAGAATTCCAAAGTAACTTAATGAATCTCTTATCTATAAAGGAAGATTTAGTTTCCTGTAAAATCATTGTAGTAGGACTAAGCCTGCAAATAATAAAATCTTTAGTAAGCACCTTCTTCCAAGAACCAAAACCTAGAAAAATAATTTAGTCGAAGATGATACTTCCTTTCCATGTTTGTATCTTGGTGTATCATAATTAACTGCTATTCTTAACTTGAAATTACCGTTTTTCTATTTATATCGGTTGAAATTAGGAGAAAAAAGAAATACTAGGTTTACGTGAAAAACCCTAGTAAAGGGAGAAACTTCACGGTTTAATTTTTCTCTTATTAATTTTGATACACAACAATATTACTAGAGGTGAAAATAAATAGAGACTCTAGAGAGCCCTAAACAATACAATGAAAGAATATTAGGGAACATAAAAGGAAAAAATACACAATATCAAATCTACAAAAATCCCCAAATATCTTCTCTTATTTTTAACACTCCCCCTCAAGATGGGACGTAGATATCAGTGAGACCCATCTTGCTAATACATGAGTCAAAGCTTTGCTATTCTTATTAATAGCGTGAGACCCTTTGGTGAGAACATCAATAACTTGTTGGCTAGATGGAATATAAGGAATACAGATACTTCTGTTTTTCAGTTTCTCTTTTATGAAGTGTCGATCAATCTCCACATGTTTTGTTCTATCATGTTGAACTGGGTTGTTAGCAATGCTAATAGTAGCCTTATTATCACAATAAAGTTTCATCGGTAAGTCACTGTCTTGAGGGAGATTAGAAAGGACTTTCTTCAACCAGATTTCTTTACAGATGCCCTGACTCATGGCTCTGTATTTAGCTTCAGTATTGCTTCTAGCCACCACACTTTGCTTCTTACTTCTCCACGTTACAAGGTTACCCCAAACGAAGGTACAGTACCCAGATGCAGACTTTCTGTCAATTAATGATCCTGCCTAGTCAGAGTCGGTATAGGCCTCAATGCATTTCCTGTCAGTTTTGCTAAACATCAAACATTTTCTTGGAGTACTTTTCAAATACCTTAGAATTTGGTTTACAACTTCCATGTGTTCTTCGTAGGGTGCCTGCATAAACTGACTAACAACACTGACAGCATAGGAAATGTCTGGTCTAGTGTGAGCTAGGTCAATTAGTCTTCCAACTAGACGTTGGTACCTTTCTTTATTAACTGGGACTTTGTCAACAAAATCTCCCAATTTGGCATTACATTCAATAAGGGTGTCAGCAAACTTACATCCAGTCATACCTGTTTCTTTCAAAAGGTCAATAGTGTATTTCTGTTGTGAAACTGAGATCCCTTCTCTCGACTTTGCCACCTCCATCCCAAGAAAGTACTTCAGGTTTCCCAGGTCTTTGATTTCAAATTCATTAGCTATTTTCTGTTTTAGTTTGTTGATCTCAGCAGTATCGTCTCCGGATAAGACAATATCATCTACATACACAATTAGAACCGCAACTTTACTGGAAGTTGACCTTTTTGTAAACAGAGTGTGATCAGAGTGTCCCTAAGTGAACCCTTGGGACTTGACAAAGGTAGTAAATCTTTTGAACCACACTCTTGGTGACTGTTTCAATCCATACAGGGCCTTTCTAAGTTTGCACACACGATGGTCAAACTGGGCTTCAAAGCCAGGAGGGGGGCTCATATACCCTCTTCTTCTAATTCCCCATTTAGAAATGCATTCTTCACAGCTAGTTGATACAGAGGCCAGTCTTTGTTGACAGCTACCGAAAGAAGGGCCCTGATTGTGTTTAACTTCGCAACAGGGGAGAATGTCTCAGAATAGCCTATCCCATAAGTTTGAGTAAATTCTTCAAGCTTGGCCTTATATCTGTCAAAAGTTTCGTCAGATTTATACTTCATCGTAAACACCCACTTGCACCCAAATGGTCTATGCCCTCTAGGGAGGGCTACACATTCTCGTGTATTATTCTTCTCAAGAGCCCTCATTTCTTCCATGATGGCAGTCTTCCACTCAGGAATTTCCATAGCCACATGTATGTTCTTTGGTATTGTTACATTGTCAAGATTGGCAGTAAATGCTTTGAACTTAGAAGATAGATTATTATAAGAGAGGAAGCTATACATGGGATATTTGGTGCAAGACCTGGTGCCCTTTCTCAAAGCAATAGGCATGTCCAGAGAAGCATCATACTCTGGTTTGTTAGACTCCTCAATAGTAGGTTTCTGAGACATGATCTCACTTACCTATGCATCTGTTGGTACCTCATCATTTCTAGTAACCCTGTTGTCTTTTGTCATATCATCCCTGTCATTCTCAGCTAGCTGTTTTGACGAATTGGTAATATCATTTTCAACACAAATAATAGCATTATCAGGGTCAATCGTACCTTGAGCTTGTGTTGGTTCAGATGCTGGAATTGGAGCCAGTGAATTAGTAGGGAACACCATTTTCTTTCTGAGATTCTTCCTGTAGTAAGTTATCCAGGGGACCTGTCTAGTGGGTAGAATAGTGTCTTGGGTACTTAGGACGGGTGTAGGAAGGAGATCAATGGGGGTTGAAAGTGATTAACATTTAGTTTCTTCACTACTACTCTCCCCCTGAAGAGGACTAATGGGAAAGAAGGGTTTATCTTCAAGGAAGGTGATGTTCATAGAGATGAAGTATTTCCGGGAAGAAGGATGGAAGCATTTGTAACCTCGCTGGTGGAGGGGGTATCCAACAAAGACACATTTCTGAGCATGGGGGTAAACTTAGTTGGTTAGGGCCAAAGCTATGGACAAACGGAGTGCACCCAAACACCCGGAGAGGAACATCAGGAATAAGGCGAGTGGTTGGGTAGAAGGTTTTGAGGCACTCAAGAGGGGTTTGGAGGTGGAGCACACGAGAAAGCATTCGATTTATAAGGTGAGCTGCAGTCAAAACTGCATCCCCCCATAAGTATGACGGAAGAGAGGTAGAAAGCATGAGGGATCGGGCAACCTCGAGGAGATGACGATTTTTCCTTTCAGCCACTCCATTTTGTTGAAGGGTATAGGCACACAAAACTCTGATGAACGATACCTTTAGTGGACAGAAACTCACGAAGGGTATTAGTAAGGAACTCACGACCATTGTCACTCCGAAGGATGACAATTTTGGCATTAAACTGAGTCTCAATGGTAGTGTAAAATTGTTGAAAAATGGATGAGACCTTAGATTTATCAGTGAGGAGAAAGACCCAAGTAAGGCGAGTGTGGTCATCGATGAAGGTCACAAACCAGCGCTGACCTGAAGAGGTAGTAACCCTCGAGGGTCCCCAAACATCACTGTGAATAAGGGTGAAAGGCTGAGAGGGTTTGTATGGTTGGGACGGAAAGGAGACCCTATGTTGTTTTGCCCGAATACACACGTTACAAGACAGGGAGGAAATGTCAACTTTGTTGAACAAATGAGGAAATAAACATTACATATATTGGAAATTTGGATGGCCGGAAAATGCCACAACATACAATCATCTTCGGAAGTTAAAAAATAGGATGACAACAAACTAGTCCTATAACTACACCTAGAAGAAGTATCATCATCAAGAAAGTAGAGTCCCCTATTGTGCCAGGCAGTGCCAACCATCTTCCCGAGCTCAAGCCTGAAAAACAACATCATCCGGTGAGAATGCCACACGACAATCCAGATCTCTAGTAATCTTACTCACAGATAATAAATTGTAAGATATTTTAGGGACGTGCAGCACATTTTGTAATATCAAGCCATCAAATGGAGAAACTTGACCCTTGCCCGCAACCGGAGCAAAGGAGCCATCAGCAATCTGGATTTTTCATTACTAGCACACGGATGATATGAGAGAAAATGATTAGAGGATCCAGTCAGATGATCTGTAGCCCCTAAATCAAGAATCCAGGGCTTTTTGCCATTAACACTAAGGAGACTCAAGGATTGAGATGTACCTGATTGAACGATAGCCCCAAGAGGGGAGGCACTAGAGTCAACTGGGCAGTGCACTTGTGATTGTGGCTGGGAGCCACTAGCAGTTTCACTCACCAGAACTTGGCTAGGATTGGGCTTGTCGTTCGGAGGTCGTCGTTTGCCATTTGGTGGTCGACCATGTAACTTCCAGCACTGATCCTTTGTATGCCAGGGTTTCTTACAGTGCTCACACATTGGAGGCGGTTTCCCGTTTTGCTTGTCTCTAATGGAACCAGATGATTTGGCACTGAAGGCTGTAGAGTCAGTCACGGGACTGGCTATGACGTTCATAGCATTGGATCTGTCTTCCTCAAGGCGAACCTCGAAACAAACTTCCATAAGTGTTGGTATCTGTATCTGTCCCAGTATTATCCTCCCTCGAACGACATCAAATTTGGAGTTTAGACCTGCTAAAAAATCATACACACGATTAATTTCCTCAATTTTATAATATTGACCTCCCCCACAAGGGAAGTCCCAGATAAGTTCCTGACACAGATCCATCTCCTGCCAAATAAGGGACAGTTTGTTATGATGTGACATCCATAGTCCCTTGCTTGCATTCATGAATCTATTTCCGCAAGGTGTACAGTCGCGATGCATTCTGTCTTTTGGAATATAACTTCTGAACTGCATCCCAGATGTCCCGAGCAGTGGTTGCATACAACAGAGGTTTTCCAATTTGAGGTTCCATACTGTGAATCAACAGAGAACGAAGTAATGAGTCCTCTCCCTTCCAGATGCTCTCCTGAGGATCTCTTAGTCTGGATTTTGGTATCTCACTAGTTAGATACCGAACTTGTAGCGGCCCTCAAGAACCATTCTAACAGATTGAGACCAAGAGAAATGATTCTGGCCATTCAACTTCTCACCAACGATTAGTCTTGTGGAGTTCCCCATGTGTCCAGACAAATAAGGTGCAGTTATTAAGGATGGGAACGCAGTTACCAGATTCTCTGGATACATCGGTAGATCTGACTGGACACCTGAACTTACTGCACTTTGACTGAGGTTGGTGGAAGCGCCAAGAGCTGCCCCAAGGGCAACGATTTGTTGTTGAAAACTCGCTTGGAGATTCGCAAGCTGCTGTTGAATCATAACCGAGGAGAGACCAATTGATCTGTGCTGGTCATGTTGGTTGCCGACAACTTGGTGAGGAACTCCGATGATGGTAGTGACGGTAGGAGGAAAAAATTGAGAACCCATGACATTAGGGCTGGAGTTGGCGCCAGAAACCTCATGGCACACCGAATCTTGAAGTGGGTTGAAACTTCCGACGCTCTGTTGGACGACTGCAGCCCCTGGTAACCCATGAAATCCCAACGATGGTGCTTGAAAGGACAATCCCGCAATGGCGCTAGGGTGGACAGCAGACACGGACCTCATTATCAGCGCTAGGGTTGAAGGATTAGCAGCGGCGGCGACGAGTTGGCGACCTGGGCAGCGGCAACGGATGGCTCCATCGGTGTCGGTAGGTTTTGAAACATCACAGCAGTGGTGGAGCTAGGGTTAAGCGACGGCGGCGGCGGCGGCGCTAGGGTTAAGTGATCTGAGGTACCGGTCGACAGCTTCTTGGATGGCGGACCCGGCGGCAGATCTTGCCTAAAATCATTTTCGTCAACGACAACTAGGGTTTCTAGGGTTTCGTCACCACGCTCTGATACCATATTGAAATTAGGAGAAAAAAGAAATACTAGGTTTACGTGAAAAAACCCTTATAAAGGAAGAAACTTCACGGTTTAATTTTTCTCTTATAATTTTGATACACAACAATGTTACAAGAGGTGAAAATAAATAGAGACTCTAAAGAGCCCTAAACAATACAAGGAAAGAATATTAGGGAACATAAAATGAAAAAATACACAGTATAAAATTTACAAAAAAGTCTCCAAATATCTTCTCTTATTTTTAGCAATATCCTTATTTCTTCTATACTTTTCTCGAAGCCTCTTGAATTCTGTCTTTGAGTTTTGTCAACCTACACGAAGAAAGTAGGAAACGCAAAGAGGAATGTCTTCTTTTGGAAATTGCATATTTTGACAATAAATCAGAATTGGATGCTTTGTCTTCTCATGAACTTCAACTTCTTTCATATGCAAAAAGTGAGCTAATGGGTCTTTATTTGGCTGAGGGGAGAAACATGATTCTGAAAGTTCCAATGGCTCCAGGTAGGTGATGGAAATACAGTCTCATTTCATTAATTCAACGAAAAGACTTGTTTCTGTTTAAGAAAAAAGTAGGTGATGAAAATACGAAATTCTTCCACTGTTTCTTGGCAGAAAAGAAAAGGAAATTGTTAATTTCAGAACTTAGATGGTTGCTCTTTTTGTTCGTTTGGAGGAATTATAGTTGAAATTCTTGGCCTTTTCAAATCATTATATTAGAAATTTCCTTCAAATCATTATATTACAAATTTCCGGTGGGTTTTCTCCAAATCTTTCAAGGGTAATGTTCTTCAGTTACTAATTGGCCTACCATTGGCTCCAAATATCAAAGTTTTGTGGATTAATGCAATTGAAGTACTTTCTGAATTTTAGCTGAAAAGGTTCCAACGGATCTTTCATAGAAAACATATCTCTTGACTTGACCGTGTCGTATCAACTCGCCTTATGACTTCTTTTCTGGTTTCTCTTTCTAAGCCTTTTGTTGATTTTTGATTATAAATTTATAAGATACATGTCTTAACCGGATTGCATTCTTTCCTCCTTTGTAATTTATATTTTTTATTAGCTTGCTTTTATTATTTTTGTTTTCACTCTTTGGTGGAGCTTATATCTTTTAAGCATTAATCATTTTTCATTTCATCAATGAAAAATTTCATAACAATCTAGGGAATGGGATAGAGGGGAGCCCTGCCCAAAGAAGTAACATTTGCCTTCCCCTCGTTAGTGATCATTAGAAAGACAGTAATTAGAAAAGAATTTGGGATGGTTTGGGTACCACCAAAATGTGGTAAGTTTCATACTATTACAAAAGGATTTTAAAGTAAAAAATTTATACTCAAATGATTTCTTTTACTCCGCATATGCCATAGGAGGCCTTCAGCTGTGCAGCTCCACAGGGTTTTGGTCTTCCCTTTGATATTCCAACCTCTTAGAGCTTCTGCAGTCCAATCCTCAATTCTGTTGGGAAGACAACATAGCTCCCCCGCTTCATTAAAAAATACAGTTCCAACTACCTGCTGCCAAAGGGCAGTGGAGAAAGAGGTGGTCCAAAGACTCACTCTGCTCTTTGAAGCAACAACAGGAAACTGATGGGTGAGATTCTTACTGGATTTTTTTTGCAATCTATCCATGGTATTTAGGCATCTGTATGCTAGACAGTAAACACCACTAGAATGCATTTGCTTTCTTTGGGATTTTAAAATTCCAGACGAGATCTATTGGAGGGCTTCACATCCTGGGGAAATTAGTAAGGTTCAAAAGCACTGATCTGGAAGAAAAAAGGCCTGATTTATCTAGGGTCTACGTGATTTTGTCTTGCTCATTCCCCATAATGGATAAAAAGAGGAGCTCATCTTCTCAAACAACGCCAGTCAACTACCCACTTCATAGTCAAATAGACCTCTTCTTAAATTGAGATCTCAGGTTTGCTGAAAAGGCACTCAGCAATCAGAAAGGGAAGCTTCCTTTCTTAGTGCGCTGTTCCTTTGAAAAGTGACCTCTCTCTGAAGGCCTCAGCAAACTGTAGAACGAGGAGACCTCCATTTAACAAGGCGTGAGATCTATTATTGAGATATTCTATGCATACCGTTATATGTAATGCATTTTGCATCTAGGCTATGGAGTGTTTTGTTCTTAAAAATATAGGGTGGCATATGTTAACAGGCGCTACTTTGTGAGTTGATAATTATGTTCTAAGAAAAAGCAATAATCTCTGATGTTTGTGAAAGAAACTTGTAACGAAATAAAACCATTAAACTAATGGTTTAGATCAATTTACGTTTCTTTTTTACTAAGATGATTTTTTAAAAACTTTAATGGGGCTTTTGGTATTCAGTTGTGGTAGTTAGTGTGGTTTGTTCAAATGGTATTTACAGAATGTTAGATTTTTATTTATTTATTATCTAAAATCTAGCTATAAGATAATTAACTGTGTTTAGTTAAATTAAGTTAAATTTTCTTACAATAATTTCTTTGATAAATCAATATTCAGAAGTAATAAATGCAGCCTAAGACACTGAACTACGTTTTTCTCTTCTCCACAGCAATTGCAGGACCTTCCTTTTCTCCTACGGAGGCTGCTTCGGGAACTCCTTAATCCACAGAGATCTCTTCCTCTTGTCATTAGAACACGTGTTTACATTGCAGTTAAGTGAATAGCTCAACTATCTGGTTGATTTAATGTCAAACTGTTGTCCTTGTTTCTCCTCCTTTACAAATTATAACTGCTGTAATATGTTTACAGATGGTACTGAGTGTAGTCTACGCTGTGAGTCCCATCGATATCATACCAGAAGGTAATATATACATATATATATATATATATATATTCTCCCCAGATACCTGTTTGTACTTTCTGTTGGTTTATTGGTTTCCTTATGAATTTGTTTTTTGTCCCTTTTGGCTTGAATGTCTATGTGCAGCATTACTAGGATTATTTGGATTGATGGATGATATCTTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATATATCGATCAGTACTCTATAATCGCCATGGAGAAACTTGA

mRNA sequence

ATGCTTGTCTGGGATCATGGATCACCATTTCAGCCGTGTAAATGCCCCTTATGCCGTCGACAAATCTCTTTATTAGTTCCTTCTGAGGTTTCACCAATTCAGCAAAGTGACCCAGAGGTTGCACGCGTTCTTAACAATATAAGGACTTATAACCGTCATTTTGGTGGCAACTCAACTGGTTTAAGTCAGCAATTGCAGGACCTTCCTTTTCTCCTACGGAGGCTGCTTCGGGAACTCCTTAATCCACAGAGATCTCTTCCTCTTGTCATTAGAACACGTGTTTACATTGCAATGGTACTGAGTGTAGTCTACGCTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAGGATTATTTGGATTGATGGATGATATCTTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATATATCGATCAGTACTCTATAATCGCCATGGAGAAACTTGA

Coding sequence (CDS)

ATGCTTGTCTGGGATCATGGATCACCATTTCAGCCGTGTAAATGCCCCTTATGCCGTCGACAAATCTCTTTATTAGTTCCTTCTGAGGTTTCACCAATTCAGCAAAGTGACCCAGAGGTTGCACGCGTTCTTAACAATATAAGGACTTATAACCGTCATTTTGGTGGCAACTCAACTGGTTTAAGTCAGCAATTGCAGGACCTTCCTTTTCTCCTACGGAGGCTGCTTCGGGAACTCCTTAATCCACAGAGATCTCTTCCTCTTGTCATTAGAACACGTGTTTACATTGCAATGGTACTGAGTGTAGTCTACGCTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAGGATTATTTGGATTGATGGATGATATCTTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATATATCGATCAGTACTCTATAATCGCCATGGAGAAACTTGA

Protein sequence

MLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTGLSQQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNRHGET
Homology
[Close]
BLAST of CaUC08G143110 vs. NCBI nr
Match: XP_038884720.1 (E3 ubiquitin-protein ligase RNF170-like isoform X2 [Benincasa hispida] >XP_038884721.1 E3 ubiquitin-protein ligase RNF170-like isoform X2 [Benincasa hispida])

HSP 1 Score: 287.0 bits (733), Expect = 9.7e-74
Identity = 145/151 (96.03%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 1   MLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTG 60
           MLVWDHGSP QPCKCPLCRRQI+LLVPSEVSPIQQSDPEV RVLNNIRTYNRHFGGNSTG
Sbjct: 35  MLVWDHGSPLQPCKCPLCRRQITLLVPSEVSPIQQSDPEVERVLNNIRTYNRHFGGNSTG 94

Query: 61  LSQQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLF 120
           LSQ+LQDLPFLLRRLLRELLNPQRSLPLVIRTRVY AMVLSVVYAVSPIDIIPEALLGLF
Sbjct: 95  LSQRLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYTAMVLSVVYAVSPIDIIPEALLGLF 154

Query: 121 GLMDDIFILLICFLYIAAIYRSVLYNRHGET 152
           GLMDDIFILLICFLYIAAIYRSVLYNRHG T
Sbjct: 155 GLMDDIFILLICFLYIAAIYRSVLYNRHGGT 185

[Close]
BLAST of CaUC08G143110 vs. NCBI nr
Match: XP_008463070.1 (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo])

HSP 1 Score: 279.6 bits (714), Expect = 1.6e-71
Identity = 141/151 (93.38%), Postives = 145/151 (96.03%), Query Frame = 0 

Query: 1   MLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTG 60
           MLVWDHGSP QPCKCPLCRR I+LLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNST 
Sbjct: 35  MLVWDHGSPLQPCKCPLCRRSITLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTD 94

Query: 61  LSQQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLF 120
           LSQ+LQDLPFLLRRLL+ELLNPQRSLPLVIRTRVYIAMVLSVVY VSPIDIIPEALLGLF
Sbjct: 95  LSQRLQDLPFLLRRLLQELLNPQRSLPLVIRTRVYIAMVLSVVYTVSPIDIIPEALLGLF 154

Query: 121 GLMDDIFILLICFLYIAAIYRSVLYNRHGET 152
           GLMDDI ILLICFLYIAA+YRSVLYNRHG T
Sbjct: 155 GLMDDILILLICFLYIAAMYRSVLYNRHGGT 185

[Close]
BLAST of CaUC08G143110 vs. NCBI nr
Match: XP_031743956.1 (E3 ubiquitin-protein ligase RNF170 isoform X5 [Cucumis sativus] >KAE8646587.1 hypothetical protein Csa_005542 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 1.7e-70
Identity = 139/151 (92.05%), Postives = 143/151 (94.70%), Query Frame = 0 

Query: 1   MLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTG 60
           MLVWDHGSP  PCKCPLCRR I+LLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNST 
Sbjct: 35  MLVWDHGSPLHPCKCPLCRRSITLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTD 94

Query: 61  LSQQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLF 120
           LSQ+LQDLPFLLRRLLREL NPQRSLPLVIRTRVYIAMVLSV+Y VSPIDIIPEALLGLF
Sbjct: 95  LSQRLQDLPFLLRRLLRELHNPQRSLPLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLF 154

Query: 121 GLMDDIFILLICFLYIAAIYRSVLYNRHGET 152
           GLMDDI ILLICFLYIAA+YRSVLYNRHG T
Sbjct: 155 GLMDDILILLICFLYIAAMYRSVLYNRHGGT 185

[Close]
BLAST of CaUC08G143110 vs. NCBI nr
Match: XP_022932121.1 (E3 ubiquitin-protein ligase RNF170-like [Cucurbita moschata] >XP_023524452.1 E3 ubiquitin-protein ligase RNF170-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG6607576.1 E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 268.9 bits (686), Expect = 2.7e-68
Identity = 134/151 (88.74%), Postives = 140/151 (92.72%), Query Frame = 0 

Query: 1   MLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTG 60
           MLVWDHGSP QPCKCPLCRRQI+LLVPSE S  QQSDPEVARVLNNIR YNRHFGGNSTG
Sbjct: 35  MLVWDHGSPLQPCKCPLCRRQITLLVPSEASATQQSDPEVARVLNNIRNYNRHFGGNSTG 94

Query: 61  LSQQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLF 120
           L+Q+LQDLPFLLRRLLRELLNPQRSLPLVIR RVY AM LSVVY VSPIDIIPEALLGLF
Sbjct: 95  LNQRLQDLPFLLRRLLRELLNPQRSLPLVIRARVYTAMFLSVVYTVSPIDIIPEALLGLF 154

Query: 121 GLMDDIFILLICFLYIAAIYRSVLYNRHGET 152
           GLMDD FILLICFLY+AA+YRSVL+NRHG T
Sbjct: 155 GLMDDAFILLICFLYVAALYRSVLHNRHGGT 185

[Close]
BLAST of CaUC08G143110 vs. NCBI nr
Match: XP_023524453.1 (E3 ubiquitin-protein ligase RNF170-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.9 bits (686), Expect = 2.7e-68
Identity = 134/151 (88.74%), Postives = 140/151 (92.72%), Query Frame = 0 

Query: 1   MLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTG 60
           MLVWDHGSP QPCKCPLCRRQI+LLVPSE S  QQSDPEVARVLNNIR YNRHFGGNSTG
Sbjct: 1   MLVWDHGSPLQPCKCPLCRRQITLLVPSEASATQQSDPEVARVLNNIRNYNRHFGGNSTG 60

Query: 61  LSQQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLF 120
           L+Q+LQDLPFLLRRLLRELLNPQRSLPLVIR RVY AM LSVVY VSPIDIIPEALLGLF
Sbjct: 61  LNQRLQDLPFLLRRLLRELLNPQRSLPLVIRARVYTAMFLSVVYTVSPIDIIPEALLGLF 120

Query: 121 GLMDDIFILLICFLYIAAIYRSVLYNRHGET 152
           GLMDD FILLICFLY+AA+YRSVL+NRHG T
Sbjct: 121 GLMDDAFILLICFLYVAALYRSVLHNRHGGT 151

[Close]
BLAST of CaUC08G143110 vs. ExPASy Swiss-Prot
Match: Q7SZN2 (E3 ubiquitin-protein ligase RNF170 OS=Danio rerio OX=7955 GN=rnf170 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.8e-20
Identity = 55/149 (36.91%), Postives = 86/149 (57.72%), Query Frame = 0 

Query: 4   WDHGSPFQPCKCPLCRRQISLLVP----SEVSPIQQSDP-EVARVLNNIRTYNRHFGGNS 63
           W +G+      CP+CR+ ++LL P    SE S +    P E   +L +I  YNR F G  
Sbjct: 116 WRYGTWLGAISCPICRQMVTLLFPLFQDSEQSAVAADSPVEPTLILTDISDYNRRFSGQP 175

Query: 64  TGLSQQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLG 123
             L  +L+D+P LLR   RE+ +    L  + R R+ + +  ++ Y VSP+D +PE +LG
Sbjct: 176 RSLLDRLRDVPTLLRHAFREMFS-VGGLFWMFRVRILLCVCGALAYLVSPLDFLPEGVLG 235

Query: 124 LFGLMDDIFILLICFLYIAAIYRSVLYNR 148
           L G +DD F++L+ F+YI+ +YR V+  R
Sbjct: 236 LLGFLDDFFVILLLFIYISIMYREVVTQR 263

[Close]
BLAST of CaUC08G143110 vs. ExPASy Swiss-Prot
Match: Q5PPX5 (E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis OX=8355 GN=rnf170 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-18
Identity = 51/144 (35.42%), Postives = 83/144 (57.64%), Query Frame = 0 

Query: 4   WDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTGLSQ 63
           W +G+      CP+CR+ ++LL P   +  Q+   +   +L     YNR F G    L  
Sbjct: 115 WRYGTWLGAINCPICRQTVTLLFPLFGATDQE---DAQNILQEATGYNRRFSGQPRSLMD 174

Query: 64  QLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLM 123
           ++ DLP LLR   RE+ +    L  + R R+ + ++ +++Y VSP+DIIPEAL G+ G +
Sbjct: 175 RIMDLPTLLRHAFREMFS-VGGLFWMFRIRIVLCLLGALLYLVSPLDIIPEALFGILGFL 234

Query: 124 DDIFILLICFLYIAAIYRSVLYNR 148
           DD+F+L +  +YI+ +YR V+  R
Sbjct: 235 DDLFVLFLLLIYISIMYREVVTQR 254

[Close]
BLAST of CaUC08G143110 vs. ExPASy Swiss-Prot
Match: F1MK05 (E3 ubiquitin-protein ligase RNF170 OS=Bos taurus OX=9913 GN=RNF170 PE=3 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-18
Identity = 48/144 (33.33%), Postives = 81/144 (56.25%), Query Frame = 0 

Query: 4   WDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTGLSQ 63
           W +GS      CP+CR+ ++LL+P  V        +V  +  +I  YNR F G    + +
Sbjct: 116 WRYGSWLGAISCPICRQTVTLLLP--VFGENDQSQDVVSLHQDISDYNRRFSGQPRSIME 175

Query: 64  QLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLM 123
           ++ DLP LLR   RE+ +    L  + R R+ + ++ +  Y +SP+D +PEAL G+ G +
Sbjct: 176 RIMDLPTLLRHAFREMFS-VGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFL 235

Query: 124 DDIFILLICFLYIAAIYRSVLYNR 148
           DD F++ +  +YI+ +YR V+  R
Sbjct: 236 DDFFVIFLLLIYISIMYREVITQR 256

[Close]
BLAST of CaUC08G143110 vs. ExPASy Swiss-Prot
Match: Q96K19 (E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens OX=9606 GN=RNF170 PE=1 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 4.6e-18
Identity = 49/144 (34.03%), Postives = 81/144 (56.25%), Query Frame = 0 

Query: 4   WDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTGLSQ 63
           W +GS      CP+CR+ ++LL+       Q  D  V R+  +I  YNR F G    + +
Sbjct: 115 WRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQD--VLRLHQDINDYNRRFSGQPRSIME 174

Query: 64  QLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLM 123
           ++ DLP LLR   RE+ +    L  + R R+ + ++ +  Y +SP+D +PEAL G+ G +
Sbjct: 175 RIMDLPTLLRHAFREMFS-VGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFL 234

Query: 124 DDIFILLICFLYIAAIYRSVLYNR 148
           DD F++ +  +YI+ +YR V+  R
Sbjct: 235 DDFFVIFLLLIYISIMYREVITQR 255

[Close]
BLAST of CaUC08G143110 vs. ExPASy Swiss-Prot
Match: Q28DS3 (E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis OX=8364 GN=rnf170 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.6e-18
Identity = 52/144 (36.11%), Postives = 81/144 (56.25%), Query Frame = 0 

Query: 4   WDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTGLSQ 63
           W +GS      CP+CR+ ++L+ P      +Q D +   +L     YNR F G    L  
Sbjct: 115 WRYGSWLGAINCPICRQTVTLIFPL-FQATEQEDSQ--NILREAIGYNRRFSGQPRSLMD 174

Query: 64  QLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLM 123
           ++ DLP LLR   RE+ +    L  + R R+ + ++ ++ Y VSP+DIIPEA+ GL G +
Sbjct: 175 RIMDLPTLLRHAFREMFS-VGGLFWMFRIRIVLCLLGALFYLVSPLDIIPEAVFGLLGFL 234

Query: 124 DDIFILLICFLYIAAIYRSVLYNR 148
           DD F+L +  +YI+ +YR V+  R
Sbjct: 235 DDFFVLFLLLIYISIMYREVVTQR 254

[Close]
BLAST of CaUC08G143110 vs. ExPASy TrEMBL
Match: A0A1S3CIS2 (E3 ubiquitin-protein ligase RNF170 OS=Cucumis melo OX=3656 GN=LOC103501307 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.5e-72
Identity = 141/151 (93.38%), Postives = 145/151 (96.03%), Query Frame = 0 

Query: 1   MLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTG 60
           MLVWDHGSP QPCKCPLCRR I+LLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNST 
Sbjct: 35  MLVWDHGSPLQPCKCPLCRRSITLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTD 94

Query: 61  LSQQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLF 120
           LSQ+LQDLPFLLRRLL+ELLNPQRSLPLVIRTRVYIAMVLSVVY VSPIDIIPEALLGLF
Sbjct: 95  LSQRLQDLPFLLRRLLQELLNPQRSLPLVIRTRVYIAMVLSVVYTVSPIDIIPEALLGLF 154

Query: 121 GLMDDIFILLICFLYIAAIYRSVLYNRHGET 152
           GLMDDI ILLICFLYIAA+YRSVLYNRHG T
Sbjct: 155 GLMDDILILLICFLYIAAMYRSVLYNRHGGT 185

[Close]
BLAST of CaUC08G143110 vs. ExPASy TrEMBL
Match: A0A6J1EVH0 (E3 ubiquitin-protein ligase RNF170 OS=Cucurbita moschata OX=3662 GN=LOC111438431 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.3e-68
Identity = 134/151 (88.74%), Postives = 140/151 (92.72%), Query Frame = 0 

Query: 1   MLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTG 60
           MLVWDHGSP QPCKCPLCRRQI+LLVPSE S  QQSDPEVARVLNNIR YNRHFGGNSTG
Sbjct: 35  MLVWDHGSPLQPCKCPLCRRQITLLVPSEASATQQSDPEVARVLNNIRNYNRHFGGNSTG 94

Query: 61  LSQQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLF 120
           L+Q+LQDLPFLLRRLLRELLNPQRSLPLVIR RVY AM LSVVY VSPIDIIPEALLGLF
Sbjct: 95  LNQRLQDLPFLLRRLLRELLNPQRSLPLVIRARVYTAMFLSVVYTVSPIDIIPEALLGLF 154

Query: 121 GLMDDIFILLICFLYIAAIYRSVLYNRHGET 152
           GLMDD FILLICFLY+AA+YRSVL+NRHG T
Sbjct: 155 GLMDDAFILLICFLYVAALYRSVLHNRHGGT 185

[Close]
BLAST of CaUC08G143110 vs. ExPASy TrEMBL
Match: A0A6J1I9X5 (E3 ubiquitin-protein ligase RNF170 OS=Cucurbita maxima OX=3661 GN=LOC111471404 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.5e-67
Identity = 133/151 (88.08%), Postives = 139/151 (92.05%), Query Frame = 0 

Query: 1   MLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTG 60
           MLVWDHGS  QPCKCPLCRRQI+LLVPSE S  QQSDPEVARVLNNIR YNRHFGGNSTG
Sbjct: 35  MLVWDHGSTLQPCKCPLCRRQITLLVPSEASVTQQSDPEVARVLNNIRNYNRHFGGNSTG 94

Query: 61  LSQQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLF 120
           L+Q+LQDLPFLLRRLLRELLNPQRSLPLVIR RVY AM LSVVY VSPIDIIPEALLGLF
Sbjct: 95  LNQRLQDLPFLLRRLLRELLNPQRSLPLVIRARVYTAMFLSVVYTVSPIDIIPEALLGLF 154

Query: 121 GLMDDIFILLICFLYIAAIYRSVLYNRHGET 152
           GLMDD FILLICFLY+AA+YRSVL+NRHG T
Sbjct: 155 GLMDDAFILLICFLYVAALYRSVLHNRHGGT 185

[Close]
BLAST of CaUC08G143110 vs. ExPASy TrEMBL
Match: A0A6J1DFH0 (E3 ubiquitin-protein ligase RNF170 OS=Momordica charantia OX=3673 GN=LOC111019617 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.4e-64
Identity = 127/149 (85.23%), Postives = 137/149 (91.95%), Query Frame = 0 

Query: 1   MLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTG 60
           MLVWDHGS  QPCKCPLCRRQI+LLVPSE S  QQS+PEVAR+LNNIRTYN HFG NS G
Sbjct: 35  MLVWDHGSSLQPCKCPLCRRQITLLVPSEASARQQSNPEVARILNNIRTYNHHFGDNSAG 94

Query: 61  LSQQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLF 120
           L Q++QDLPFLLRRLLRELL+PQRSLPLVIR RVYIAMVLSVVY +SPIDIIPEA+LG+F
Sbjct: 95  LIQRMQDLPFLLRRLLRELLDPQRSLPLVIRARVYIAMVLSVVYTLSPIDIIPEAMLGVF 154

Query: 121 GLMDDIFILLICFLYIAAIYRSVLYNRHG 150
           GLMDDIFILLICFLYIAA+YRSVLY RHG
Sbjct: 155 GLMDDIFILLICFLYIAAMYRSVLYYRHG 183

[Close]
BLAST of CaUC08G143110 vs. ExPASy TrEMBL
Match: A0A2I4FPP7 (RING-type E3 ubiquitin transferase OS=Juglans regia OX=51240 GN=LOC109000985 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 108/149 (72.48%), Postives = 129/149 (86.58%), Query Frame = 0 

Query: 1   MLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTG 60
           MLVW HGS  QPCKCPLCRRQI+LLVP E S  Q+ DPEVA +L  ++TYNR FGG++ G
Sbjct: 1   MLVWHHGSALQPCKCPLCRRQITLLVPGEASLSQRHDPEVAEILGKVQTYNRLFGGHANG 60

Query: 61  LSQQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLF 120
           L Q++QDLPFLLRRLLREL++PQRSLPLVIR RVYIAM+LSVVY VSPIDIIPE +LG+ 
Sbjct: 61  LFQRMQDLPFLLRRLLRELMDPQRSLPLVIRARVYIAMLLSVVYVVSPIDIIPEGILGIV 120

Query: 121 GLMDDIFILLICFLYIAAIYRSVLYNRHG 150
           GL+DD+ I+LICFL++AAIYRS+L+ RHG
Sbjct: 121 GLLDDLLIVLICFLHVAAIYRSILHFRHG 149

[Close]
BLAST of CaUC08G143110 vs. TAIR 10
Match: AT1G22510.1 (RING/U-box protein with domain of unknown function (DUF 1232) )

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-54
Identity = 100/149 (67.11%), Postives = 127/149 (85.23%), Query Frame = 0 

Query: 1   MLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTG 60
           MLVW HGS  +PCKCPLCRR ISLLVPSE +   ++D  V+ VL+++ TYNR FGG S+G
Sbjct: 35  MLVWRHGSTLRPCKCPLCRRPISLLVPSEETVRSRNDATVSEVLHDVETYNRVFGGQSSG 94

Query: 61  LSQQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLF 120
           L Q++QDLPFLLRRLLRE+++PQR+LPLVIR RVYIA++LS +Y +SPIDIIPE +LG+ 
Sbjct: 95  LIQRMQDLPFLLRRLLREMMDPQRTLPLVIRARVYIALILSAIYIISPIDIIPEGVLGVI 154

Query: 121 GLMDDIFILLICFLYIAAIYRSVLYNRHG 150
           GL+DD+ I LICFL++AA+YRSVLY+RHG
Sbjct: 155 GLLDDLLIALICFLHVAALYRSVLYSRHG 183

[Close]
BLAST of CaUC08G143110 vs. TAIR 10
Match: AT1G22510.2 (RING/U-box protein with domain of unknown function (DUF 1232) )

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-54
Identity = 100/149 (67.11%), Postives = 127/149 (85.23%), Query Frame = 0 

Query: 1   MLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTG 60
           MLVW HGS  +PCKCPLCRR ISLLVPSE +   ++D  V+ VL+++ TYNR FGG S+G
Sbjct: 53  MLVWRHGSTLRPCKCPLCRRPISLLVPSEETVRSRNDATVSEVLHDVETYNRVFGGQSSG 112

Query: 61  LSQQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLF 120
           L Q++QDLPFLLRRLLRE+++PQR+LPLVIR RVYIA++LS +Y +SPIDIIPE +LG+ 
Sbjct: 113 LIQRMQDLPFLLRRLLREMMDPQRTLPLVIRARVYIALILSAIYIISPIDIIPEGVLGVI 172

Query: 121 GLMDDIFILLICFLYIAAIYRSVLYNRHG 150
           GL+DD+ I LICFL++AA+YRSVLY+RHG
Sbjct: 173 GLLDDLLIALICFLHVAALYRSVLYSRHG 201

[Close]
BLAST of CaUC08G143110 vs. TAIR 10
Match: AT1G72175.1 (RING/U-box protein with domain of unknown function (DUF 1232) )

HSP 1 Score: 206.5 bits (524), Expect = 1.6e-53
Identity = 102/148 (68.92%), Postives = 122/148 (82.43%), Query Frame = 0 

Query: 1   MLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTG 60
           MLVW HGS  QPCKCPLCRR ISLLVPSE +   ++D  V  VL N+ TYNR FGG S+ 
Sbjct: 35  MLVWRHGSTLQPCKCPLCRRHISLLVPSEDTIRDRNDATVKEVLGNLETYNRLFGGRSSS 94

Query: 61  LSQQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLF 120
           L Q++QDLPFLLRRLLRE+++PQR+LPLVIR RVYIAM+LS VY +SPIDIIPE +LG+ 
Sbjct: 95  LVQRMQDLPFLLRRLLREMMDPQRTLPLVIRARVYIAMILSAVYIISPIDIIPEGVLGVV 154

Query: 121 GLMDDIFILLICFLYIAAIYRSVLYNRH 149
           GL+DD+ I LICFL++AA+YRSVLY RH
Sbjct: 155 GLLDDLLIALICFLHVAALYRSVLYFRH 182

[Close]
BLAST of CaUC08G143110 vs. TAIR 10
Match: AT4G33940.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-14
Identity = 45/138 (32.61%), Postives = 77/138 (55.80%), Query Frame = 0 

Query: 4   WDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTGLSQ 63
           W++ +  +PCKCP+C R I+ L P E S  ++ + EV  VL+ +R YNR F G  TG  Q
Sbjct: 102 WNYAAISRPCKCPMCVRHITKLSP-EPSLQERQEQEVKEVLDKVRRYNRLFVGGLTGFVQ 161

Query: 64  QLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLM 123
           ++ +LPFL++R++  +++   +       R++ AM +S +Y  +  + IP     +  + 
Sbjct: 162 KVHELPFLVKRMVWHMMDTDVNNLYFHEVRIF-AMFMSTLYTAAEFNFIPTGGFRIVTVF 221

Query: 124 DDIFILLICFLYIAAIYR 142
           D   I +I  L +  IYR
Sbjct: 222 DYAAIAMILILRLVGIYR 237

The following BLAST results are available for this feature:
BLAST of CaUC08G143110 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038884720.19.7e-7496.03E3 ubiquitin-protein ligase RNF170-like isoform X2 [Benincasa hispida] >XP_03888... [more]
XP_008463070.11.6e-7193.38PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo][more]
XP_031743956.11.7e-7092.05E3 ubiquitin-protein ligase RNF170 isoform X5 [Cucumis sativus] >KAE8646587.1 hy... [more]
XP_022932121.12.7e-6888.74E3 ubiquitin-protein ligase RNF170-like [Cucurbita moschata] >XP_023524452.1 E3 ... [more]
XP_023524453.12.7e-6888.74E3 ubiquitin-protein ligase RNF170-like isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of CaUC08G143110 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q7SZN23.8e-2036.91E3 ubiquitin-protein ligase RNF170 OS=Danio rerio OX=7955 GN=rnf170 PE=2 SV=1[more]
Q5PPX51.2e-1835.42E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis OX=8355 GN=rnf170 PE=2 SV=1[more]
F1MK053.5e-1833.33E3 ubiquitin-protein ligase RNF170 OS=Bos taurus OX=9913 GN=RNF170 PE=3 SV=2[more]
Q96K194.6e-1834.03E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens OX=9606 GN=RNF170 PE=1 SV=2[more]
Q28DS34.6e-1836.11E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis OX=8364 GN=rnf170 PE=2 ... [more]
BLAST of CaUC08G143110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CIS27.5e-7293.38E3 ubiquitin-protein ligase RNF170 OS=Cucumis melo OX=3656 GN=LOC103501307 PE=4 ... [more]
A0A6J1EVH01.3e-6888.74E3 ubiquitin-protein ligase RNF170 OS=Cucurbita moschata OX=3662 GN=LOC111438431... [more]
A0A6J1I9X51.5e-6788.08E3 ubiquitin-protein ligase RNF170 OS=Cucurbita maxima OX=3661 GN=LOC111471404 P... [more]
A0A6J1DFH04.4e-6485.23E3 ubiquitin-protein ligase RNF170 OS=Momordica charantia OX=3673 GN=LOC11101961... [more]
A0A2I4FPP71.1e-5472.48RING-type E3 ubiquitin transferase OS=Juglans regia OX=51240 GN=LOC109000985 PE=... [more]
BLAST of CaUC08G143110 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G22510.11.1e-5467.11RING/U-box protein with domain of unknown function (DUF 1232) [more]
AT1G22510.21.1e-5467.11RING/U-box protein with domain of unknown function (DUF 1232) [more]
AT1G72175.11.6e-5368.92RING/U-box protein with domain of unknown function (DUF 1232) [more]
AT4G33940.12.4e-1432.61RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010652Domain of unknown function DUF1232PFAMPF06803DUF1232coord: 96..130
e-value: 6.7E-9
score: 35.4
NoneNo IPR availablePANTHERPTHR22894:SF10BNAC07G13660D PROTEINcoord: 1..150
IPR038896E3 ubiquitin-protein ligase RNF170PANTHERPTHR22894UNCHARACTERIZEDcoord: 1..150

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC08G143110.1CaUC08G143110.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0046872 metal ion binding
molecular_function GO:0061630 ubiquitin protein ligase activity