Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCAATAAGATTCAAAATTGAAAATTTTGATGGAAAGGGTGATTTTGGTCTTTGGAAGGCCAAAATCAGAGCAGTTCTTGATCAACAGAAGGCTCACAAGGCTCTTTTAGATTCATCTACTCTACCAAACATAGCCAAAGCTCAAGAAAAATTGGAAAGTCTTCTTGCAACCAAAGATCTTCCAAATAAAATGTTTTTGGGAGAAACTTTTTTCACATTTAAAATGGATGCCTCCAAGACTTACATAGAAAACTTGGATGAATACAAAAAGATAGTTTCAGAATTTAAAAGTCTTGGAGACAAATTGGGTGACAAAAATGAAGCCTATGTTCTATTAAACTCACTATTGGATACCTACAAGGATGTGAATAATGCTTTGAAAATATGGCAAAGATTCGATTACAACTGA
mRNA sequence
ATGTCATCAATAAGATTCAAAATTGAAAATTTTGATGGAAAGGGTGATTTTGGTCTTTGGAAGGCCAAAATCAGAGCAGTTCTTGATCAACAGAAGGCTCACAAGGCTCTTTTAGATTCATCTACTCTACCAAACATAGCCAAAGCTCAAGAAAAATTGGAAAGTCTTCTTGCAACCAAAGATCTTCCAAATAAAATGTTTTTGGGAGAAACTTTTTTCACATTTAAAATGGATGCCTCCAAGACTTACATAGAAAACTTGGATGAATACAAAAAGATAGTTTCAGAATTTAAAAGTCTTGGAGACAAATTGGGTGACAAAAATGAAGCCTATGTTCTATTAAACTCACTATTGGATACCTACAAGGATGTGAATAATGCTTTGAAAATATGGCAAAGATTCGATTACAACTGA
Coding sequence (CDS)
ATGTCATCAATAAGATTCAAAATTGAAAATTTTGATGGAAAGGGTGATTTTGGTCTTTGGAAGGCCAAAATCAGAGCAGTTCTTGATCAACAGAAGGCTCACAAGGCTCTTTTAGATTCATCTACTCTACCAAACATAGCCAAAGCTCAAGAAAAATTGGAAAGTCTTCTTGCAACCAAAGATCTTCCAAATAAAATGTTTTTGGGAGAAACTTTTTTCACATTTAAAATGGATGCCTCCAAGACTTACATAGAAAACTTGGATGAATACAAAAAGATAGTTTCAGAATTTAAAAGTCTTGGAGACAAATTGGGTGACAAAAATGAAGCCTATGTTCTATTAAACTCACTATTGGATACCTACAAGGATGTGAATAATGCTTTGAAAATATGGCAAAGATTCGATTACAACTGA
Protein sequence
MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLPNIAKAQEKLESLLATKDLPNKMFLGETFFTFKMDASKTYIENLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVNNALKIWQRFDYN
Homology
BLAST of CaUC08G142670 vs. NCBI nr
Match:
XP_038896323.1 (uncharacterized protein LOC120084587 [Benincasa hispida])
HSP 1 Score: 174.1 bits (440), Expect = 8.3e-40
Identity = 91/148 (61.49%), Postives = 108/148 (72.97%), Query Frame = 0
Query: 1 MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLPNIAKAQE--------- 60
MS RF++E FDGKGDFGLWKAKI+A+LDQQKAH+ALL+ STL AQE
Sbjct: 1 MSIARFEVEKFDGKGDFGLWKAKIKAILDQQKAHRALLNPSTLSATMTAQEKEDWELATY 60
Query: 61 ----------KLESLLATKDLPNKMFLGETFFTFKMDASKTYIENLDEYKKIVSEFKSLG 120
KLE L ATKDLP+KM+L E FFTFKMD+SKT N DE+KKIV+EFK+LG
Sbjct: 61 DQETAYRIWTKLEELYATKDLPSKMYLSEKFFTFKMDSSKTLTNNFDEFKKIVAEFKTLG 120
Query: 121 DKLGDKNEAYVLLNSLLDTYKDVNNALK 130
+KL DKNEAYVL NSL ++YK++ NALK
Sbjct: 121 EKLSDKNEAYVLPNSLPESYKEIKNALK 148
BLAST of CaUC08G142670 vs. NCBI nr
Match:
XP_038882247.1 (uncharacterized protein LOC120073473 [Benincasa hispida])
HSP 1 Score: 125.2 bits (313), Expect = 4.4e-25
Identity = 65/146 (44.52%), Postives = 93/146 (63.70%), Query Frame = 0
Query: 1 MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLPNIAKAQE--------- 60
M++ R++IE FDGK DF LWK KI+ VL QQKA A+ + + P A E
Sbjct: 1 MATTRYEIEKFDGKTDFELWKVKIKEVLGQQKALLAITNPAKYPETLTAAEKKTIEIVDQ 60
Query: 61 --------KLESLLATKDLPNKMFLGETFFTFKMDASKTYIENLDEYKKIVSEFKSLGDK 120
KL + KDL NK FL E FFT KMD +K+ +NL+E+K++ +F+S+GD
Sbjct: 61 PTAYDLWKKLNEIYLNKDLYNKAFLRERFFTHKMDVAKSLTDNLNEFKRLSLKFRSIGDN 120
Query: 121 LGDKNEAYVLLNSLLDTYKDVNNALK 130
+G++NEA++LLNSLL+++KDV A+K
Sbjct: 121 IGEENEAFILLNSLLESFKDVKTAMK 146
BLAST of CaUC08G142670 vs. NCBI nr
Match:
XP_038904517.1 (uncharacterized protein LOC120090894 [Benincasa hispida])
HSP 1 Score: 123.2 bits (308), Expect = 1.7e-24
Identity = 64/146 (43.84%), Postives = 94/146 (64.38%), Query Frame = 0
Query: 1 MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLPN------------IAK 60
M++ R++IE F+G DFGLWK KI+AVL QQKA A+ D + P + K
Sbjct: 1 MATTRYEIEKFNGNTDFGLWKVKIKAVLGQQKALLAITDPAKYPETLTDVEKETIEIVDK 60
Query: 61 AQ-----EKLESLLATKDLPNKMFLGETFFTFKMDASKTYIENLDEYKKIVSEFKSLGDK 120
A KL + KDLPNK F + F T+KMD K+ +NL+++K++ SEFKS+GD
Sbjct: 61 ATSDALWNKLNEIYLHKDLPNKAFWRKRFLTYKMDVVKSLTDNLNKFKRLSSEFKSIGDN 120
Query: 121 LGDKNEAYVLLNSLLDTYKDVNNALK 130
+G++N+A++LLNSL +++KDVN +K
Sbjct: 121 IGEENDAFILLNSLPESFKDVNTTMK 146
BLAST of CaUC08G142670 vs. NCBI nr
Match:
XP_038885928.1 (uncharacterized protein LOC120076236 [Benincasa hispida])
HSP 1 Score: 122.5 bits (306), Expect = 2.9e-24
Identity = 68/164 (41.46%), Postives = 97/164 (59.15%), Query Frame = 0
Query: 1 MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLPNIA-KAQE-------- 60
M++ R++IE F+ K DF LWKAKI+ VL +QKA A+ D + P I KA++
Sbjct: 1 MTTTRYEIEKFEAKTDFELWKAKIKVVLRKQKALLAITDPAKYPKILFKAEKETIESNAY 60
Query: 61 --------------------------KLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
KL + KDLPNK FL E FFT+KMD +K+ +
Sbjct: 61 GTIVLNVIDSVLRQIVDRPTAYALWNKLNDIYLNKDLPNKAFLRERFFTYKMDPAKSLTD 120
Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVNNALK 130
NL+E+K + S+F+S+GD +G++NEA++LLNSL +T+KDV ALK
Sbjct: 121 NLNEFKSLSSDFRSIGDNIGEENEAFILLNSLPETFKDVKTALK 164
BLAST of CaUC08G142670 vs. NCBI nr
Match:
XP_038904504.1 (uncharacterized protein LOC120090876 [Benincasa hispida])
HSP 1 Score: 119.0 bits (297), Expect = 3.2e-23
Identity = 65/129 (50.39%), Postives = 81/129 (62.79%), Query Frame = 0
Query: 1 MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLPNIAKAQEKLESLLATK 60
MS RF+++ FD KGDFGLWKAKI+A+LDQQKA +AL D STLP + KAQEK + L
Sbjct: 1 MSVARFEVKKFDSKGDFGLWKAKIKAILDQQKARRALFDPSTLPALVKAQEKEDWELVA- 60
Query: 61 DLPNKMFLGETFFTFKMDASKTYIENLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDT 120
DE+KKI FK+LG+KLGD+NEAYVLLNSL +
Sbjct: 61 --------------------------YDEFKKIFVAFKTLGEKLGDENEAYVLLNSLPEP 102
Query: 121 YKDVNNALK 130
Y+++ NALK
Sbjct: 121 YREIKNALK 102
BLAST of CaUC08G142670 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 7.1e-10
Identity = 38/159 (23.90%), Postives = 76/159 (47.80%), Query Frame = 0
Query: 1 MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLPNIAKAQE--------- 60
MS +++++ F+G F W+ ++R +L QQ HK L S P+ KA++
Sbjct: 1 MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60
Query: 61 --------------------------KLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
+LESL +K L NK++L + + M ++
Sbjct: 61 SAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLS 120
Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDV 125
+L+ + ++++ +LG K+ ++++A +LLNSL +Y ++
Sbjct: 121 HLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNL 159
BLAST of CaUC08G142670 vs. ExPASy TrEMBL
Match:
A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)
HSP 1 Score: 118.2 bits (295), Expect = 2.6e-23
Identity = 67/164 (40.85%), Postives = 97/164 (59.15%), Query Frame = 0
Query: 1 MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLP-NIAKAQ--------- 60
M+S RF++ F+G GDF LW+ KIRA+L Q K K +LD LP NI +++
Sbjct: 1 MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAY 60
Query: 61 -------------------------EKLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
+KLESL TK LPNK+++ E FF +KMD SK+ E
Sbjct: 61 STILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEE 120
Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVNNALK 130
NLDE++KIV + ++G+K+ D+N+A +LLNSL +TY++V A+K
Sbjct: 121 NLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIK 163
BLAST of CaUC08G142670 vs. ExPASy TrEMBL
Match:
A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)
HSP 1 Score: 117.5 bits (293), Expect = 4.5e-23
Identity = 67/164 (40.85%), Postives = 96/164 (58.54%), Query Frame = 0
Query: 1 MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLP-NIAKAQ--------- 60
M+S RF++ F+G GDF LW+ KIRA+L Q K K +LD LP NI +++
Sbjct: 1 MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAY 60
Query: 61 -------------------------EKLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
+KLESL TK LPNK+++ E FF +KMD SK E
Sbjct: 61 WTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEE 120
Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVNNALK 130
NLDE++KIV + ++G+K+ D+N+A +LLNSL +TY++V A+K
Sbjct: 121 NLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIK 163
BLAST of CaUC08G142670 vs. ExPASy TrEMBL
Match:
A0A5A7U6R2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00930 PE=4 SV=1)
HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 67/164 (40.85%), Postives = 90/164 (54.88%), Query Frame = 0
Query: 1 MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLP-NIAKAQ--------- 60
M++ +F+IE FDG GDF LW +I A+L QKA KAL D LP + K++
Sbjct: 1 MTTTKFEIEKFDGNGDFTLWTKRITAILGSQKALKALEDPKELPATLTKSERETLEEVAY 60
Query: 61 -------------------------EKLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
EKL+SL KDLPNKMF+ E F+FK + +K E
Sbjct: 61 STLIMNITDNVLRQVIEETTAFATWEKLKSLYEKKDLPNKMFIKEKLFSFKKNQNKNLDE 120
Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVNNALK 130
NLDE+KK+ + G+KLG +NEA +L+NS+ DTYK+V LK
Sbjct: 121 NLDEFKKLTNALNQTGEKLGAENEAAILINSIHDTYKEVKTGLK 164
BLAST of CaUC08G142670 vs. ExPASy TrEMBL
Match:
A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)
HSP 1 Score: 114.4 bits (285), Expect = 3.8e-22
Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = 0
Query: 1 MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLP-NIAKAQ--------- 60
M+S RF++ F+G GDF LW+ KIRA+L Q K K +LD LP NI +++
Sbjct: 1 MASTRFEVSKFNGHGDFSLWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAY 60
Query: 61 -------------------------EKLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
+KLESL TK L NK+++ E FF +KMD SK+ E
Sbjct: 61 STILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEE 120
Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVNNALK 130
NLDE++KIV + ++G+K+ D+N+A +LLNSL +TY++V A+K
Sbjct: 121 NLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIK 163
BLAST of CaUC08G142670 vs. ExPASy TrEMBL
Match:
A0A5D3BRB2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2454G00070 PE=4 SV=1)
HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 64/165 (38.79%), Postives = 93/165 (56.36%), Query Frame = 0
Query: 1 MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLP---------------- 60
M+S RF++ F+ GDF LW+ KIRA+L Q K K +LD LP
Sbjct: 1 MASTRFEVSKFNVNGDFALWRKKIRAILVQHKVAK-ILDEGRLPANITENEKRDMDEMAY 60
Query: 61 --------------------NIAKAQEKLESLLATKDLPNKMFLGETFFTFKMDASKTYI 120
A+ +KLESL TK LPNK+++ E FF +KMD SK+
Sbjct: 61 STILMYLSVEVLRLVDETTTTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLE 120
Query: 121 ENLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVNNALK 130
ENL+E++KIV + ++G+K+ D+N+A +LLNSL +TY++V A+K
Sbjct: 121 ENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPETYREVKAAIK 164
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P10978 | 7.1e-10 | 23.90 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3DNU1 | 2.6e-23 | 40.85 | Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... | [more] |
A0A5A7U2U7 | 4.5e-23 | 40.85 | Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku... | [more] |
A0A5A7U6R2 | 1.3e-22 | 40.85 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5A7UB25 | 3.8e-22 | 40.24 | Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... | [more] |
A0A5D3BRB2 | 1.9e-21 | 38.79 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
Match Name | E-value | Identity | Description | |