CaUC08G142670 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC08G142670
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCiama_Chr08: 4230906 .. 4231319 (+)
RNA-Seq ExpressionCaUC08G142670
SyntenyCaUC08G142670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCAATAAGATTCAAAATTGAAAATTTTGATGGAAAGGGTGATTTTGGTCTTTGGAAGGCCAAAATCAGAGCAGTTCTTGATCAACAGAAGGCTCACAAGGCTCTTTTAGATTCATCTACTCTACCAAACATAGCCAAAGCTCAAGAAAAATTGGAAAGTCTTCTTGCAACCAAAGATCTTCCAAATAAAATGTTTTTGGGAGAAACTTTTTTCACATTTAAAATGGATGCCTCCAAGACTTACATAGAAAACTTGGATGAATACAAAAAGATAGTTTCAGAATTTAAAAGTCTTGGAGACAAATTGGGTGACAAAAATGAAGCCTATGTTCTATTAAACTCACTATTGGATACCTACAAGGATGTGAATAATGCTTTGAAAATATGGCAAAGATTCGATTACAACTGA

mRNA sequence

ATGTCATCAATAAGATTCAAAATTGAAAATTTTGATGGAAAGGGTGATTTTGGTCTTTGGAAGGCCAAAATCAGAGCAGTTCTTGATCAACAGAAGGCTCACAAGGCTCTTTTAGATTCATCTACTCTACCAAACATAGCCAAAGCTCAAGAAAAATTGGAAAGTCTTCTTGCAACCAAAGATCTTCCAAATAAAATGTTTTTGGGAGAAACTTTTTTCACATTTAAAATGGATGCCTCCAAGACTTACATAGAAAACTTGGATGAATACAAAAAGATAGTTTCAGAATTTAAAAGTCTTGGAGACAAATTGGGTGACAAAAATGAAGCCTATGTTCTATTAAACTCACTATTGGATACCTACAAGGATGTGAATAATGCTTTGAAAATATGGCAAAGATTCGATTACAACTGA

Coding sequence (CDS)

ATGTCATCAATAAGATTCAAAATTGAAAATTTTGATGGAAAGGGTGATTTTGGTCTTTGGAAGGCCAAAATCAGAGCAGTTCTTGATCAACAGAAGGCTCACAAGGCTCTTTTAGATTCATCTACTCTACCAAACATAGCCAAAGCTCAAGAAAAATTGGAAAGTCTTCTTGCAACCAAAGATCTTCCAAATAAAATGTTTTTGGGAGAAACTTTTTTCACATTTAAAATGGATGCCTCCAAGACTTACATAGAAAACTTGGATGAATACAAAAAGATAGTTTCAGAATTTAAAAGTCTTGGAGACAAATTGGGTGACAAAAATGAAGCCTATGTTCTATTAAACTCACTATTGGATACCTACAAGGATGTGAATAATGCTTTGAAAATATGGCAAAGATTCGATTACAACTGA

Protein sequence

MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLPNIAKAQEKLESLLATKDLPNKMFLGETFFTFKMDASKTYIENLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVNNALKIWQRFDYN
Homology
BLAST of CaUC08G142670 vs. NCBI nr
Match: XP_038896323.1 (uncharacterized protein LOC120084587 [Benincasa hispida])

HSP 1 Score: 174.1 bits (440), Expect = 8.3e-40
Identity = 91/148 (61.49%), Postives = 108/148 (72.97%), Query Frame = 0

Query: 1   MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLPNIAKAQE--------- 60
           MS  RF++E FDGKGDFGLWKAKI+A+LDQQKAH+ALL+ STL     AQE         
Sbjct: 1   MSIARFEVEKFDGKGDFGLWKAKIKAILDQQKAHRALLNPSTLSATMTAQEKEDWELATY 60

Query: 61  ----------KLESLLATKDLPNKMFLGETFFTFKMDASKTYIENLDEYKKIVSEFKSLG 120
                     KLE L ATKDLP+KM+L E FFTFKMD+SKT   N DE+KKIV+EFK+LG
Sbjct: 61  DQETAYRIWTKLEELYATKDLPSKMYLSEKFFTFKMDSSKTLTNNFDEFKKIVAEFKTLG 120

Query: 121 DKLGDKNEAYVLLNSLLDTYKDVNNALK 130
           +KL DKNEAYVL NSL ++YK++ NALK
Sbjct: 121 EKLSDKNEAYVLPNSLPESYKEIKNALK 148

BLAST of CaUC08G142670 vs. NCBI nr
Match: XP_038882247.1 (uncharacterized protein LOC120073473 [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 4.4e-25
Identity = 65/146 (44.52%), Postives = 93/146 (63.70%), Query Frame = 0

Query: 1   MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLPNIAKAQE--------- 60
           M++ R++IE FDGK DF LWK KI+ VL QQKA  A+ + +  P    A E         
Sbjct: 1   MATTRYEIEKFDGKTDFELWKVKIKEVLGQQKALLAITNPAKYPETLTAAEKKTIEIVDQ 60

Query: 61  --------KLESLLATKDLPNKMFLGETFFTFKMDASKTYIENLDEYKKIVSEFKSLGDK 120
                   KL  +   KDL NK FL E FFT KMD +K+  +NL+E+K++  +F+S+GD 
Sbjct: 61  PTAYDLWKKLNEIYLNKDLYNKAFLRERFFTHKMDVAKSLTDNLNEFKRLSLKFRSIGDN 120

Query: 121 LGDKNEAYVLLNSLLDTYKDVNNALK 130
           +G++NEA++LLNSLL+++KDV  A+K
Sbjct: 121 IGEENEAFILLNSLLESFKDVKTAMK 146

BLAST of CaUC08G142670 vs. NCBI nr
Match: XP_038904517.1 (uncharacterized protein LOC120090894 [Benincasa hispida])

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-24
Identity = 64/146 (43.84%), Postives = 94/146 (64.38%), Query Frame = 0

Query: 1   MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLPN------------IAK 60
           M++ R++IE F+G  DFGLWK KI+AVL QQKA  A+ D +  P             + K
Sbjct: 1   MATTRYEIEKFNGNTDFGLWKVKIKAVLGQQKALLAITDPAKYPETLTDVEKETIEIVDK 60

Query: 61  AQ-----EKLESLLATKDLPNKMFLGETFFTFKMDASKTYIENLDEYKKIVSEFKSLGDK 120
           A       KL  +   KDLPNK F  + F T+KMD  K+  +NL+++K++ SEFKS+GD 
Sbjct: 61  ATSDALWNKLNEIYLHKDLPNKAFWRKRFLTYKMDVVKSLTDNLNKFKRLSSEFKSIGDN 120

Query: 121 LGDKNEAYVLLNSLLDTYKDVNNALK 130
           +G++N+A++LLNSL +++KDVN  +K
Sbjct: 121 IGEENDAFILLNSLPESFKDVNTTMK 146

BLAST of CaUC08G142670 vs. NCBI nr
Match: XP_038885928.1 (uncharacterized protein LOC120076236 [Benincasa hispida])

HSP 1 Score: 122.5 bits (306), Expect = 2.9e-24
Identity = 68/164 (41.46%), Postives = 97/164 (59.15%), Query Frame = 0

Query: 1   MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLPNIA-KAQE-------- 60
           M++ R++IE F+ K DF LWKAKI+ VL +QKA  A+ D +  P I  KA++        
Sbjct: 1   MTTTRYEIEKFEAKTDFELWKAKIKVVLRKQKALLAITDPAKYPKILFKAEKETIESNAY 60

Query: 61  --------------------------KLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
                                     KL  +   KDLPNK FL E FFT+KMD +K+  +
Sbjct: 61  GTIVLNVIDSVLRQIVDRPTAYALWNKLNDIYLNKDLPNKAFLRERFFTYKMDPAKSLTD 120

Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVNNALK 130
           NL+E+K + S+F+S+GD +G++NEA++LLNSL +T+KDV  ALK
Sbjct: 121 NLNEFKSLSSDFRSIGDNIGEENEAFILLNSLPETFKDVKTALK 164

BLAST of CaUC08G142670 vs. NCBI nr
Match: XP_038904504.1 (uncharacterized protein LOC120090876 [Benincasa hispida])

HSP 1 Score: 119.0 bits (297), Expect = 3.2e-23
Identity = 65/129 (50.39%), Postives = 81/129 (62.79%), Query Frame = 0

Query: 1   MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLPNIAKAQEKLESLLATK 60
           MS  RF+++ FD KGDFGLWKAKI+A+LDQQKA +AL D STLP + KAQEK +  L   
Sbjct: 1   MSVARFEVKKFDSKGDFGLWKAKIKAILDQQKARRALFDPSTLPALVKAQEKEDWELVA- 60

Query: 61  DLPNKMFLGETFFTFKMDASKTYIENLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDT 120
                                      DE+KKI   FK+LG+KLGD+NEAYVLLNSL + 
Sbjct: 61  --------------------------YDEFKKIFVAFKTLGEKLGDENEAYVLLNSLPEP 102

Query: 121 YKDVNNALK 130
           Y+++ NALK
Sbjct: 121 YREIKNALK 102

BLAST of CaUC08G142670 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.1e-10
Identity = 38/159 (23.90%), Postives = 76/159 (47.80%), Query Frame = 0

Query: 1   MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLPNIAKAQE--------- 60
           MS +++++  F+G   F  W+ ++R +L QQ  HK L   S  P+  KA++         
Sbjct: 1   MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60

Query: 61  --------------------------KLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
                                     +LESL  +K L NK++L +  +   M     ++ 
Sbjct: 61  SAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLS 120

Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDV 125
           +L+ +  ++++  +LG K+ ++++A +LLNSL  +Y ++
Sbjct: 121 HLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNL 159

BLAST of CaUC08G142670 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.6e-23
Identity = 67/164 (40.85%), Postives = 97/164 (59.15%), Query Frame = 0

Query: 1   MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLP-NIAKAQ--------- 60
           M+S RF++  F+G GDF LW+ KIRA+L Q K  K +LD   LP NI +++         
Sbjct: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAY 60

Query: 61  -------------------------EKLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
                                    +KLESL  TK LPNK+++ E FF +KMD SK+  E
Sbjct: 61  STILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEE 120

Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVNNALK 130
           NLDE++KIV +  ++G+K+ D+N+A +LLNSL +TY++V  A+K
Sbjct: 121 NLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIK 163

BLAST of CaUC08G142670 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 4.5e-23
Identity = 67/164 (40.85%), Postives = 96/164 (58.54%), Query Frame = 0

Query: 1   MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLP-NIAKAQ--------- 60
           M+S RF++  F+G GDF LW+ KIRA+L Q K  K +LD   LP NI +++         
Sbjct: 1   MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAY 60

Query: 61  -------------------------EKLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
                                    +KLESL  TK LPNK+++ E FF +KMD SK   E
Sbjct: 61  WTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEE 120

Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVNNALK 130
           NLDE++KIV +  ++G+K+ D+N+A +LLNSL +TY++V  A+K
Sbjct: 121 NLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIK 163

BLAST of CaUC08G142670 vs. ExPASy TrEMBL
Match: A0A5A7U6R2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00930 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 67/164 (40.85%), Postives = 90/164 (54.88%), Query Frame = 0

Query: 1   MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLP-NIAKAQ--------- 60
           M++ +F+IE FDG GDF LW  +I A+L  QKA KAL D   LP  + K++         
Sbjct: 1   MTTTKFEIEKFDGNGDFTLWTKRITAILGSQKALKALEDPKELPATLTKSERETLEEVAY 60

Query: 61  -------------------------EKLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
                                    EKL+SL   KDLPNKMF+ E  F+FK + +K   E
Sbjct: 61  STLIMNITDNVLRQVIEETTAFATWEKLKSLYEKKDLPNKMFIKEKLFSFKKNQNKNLDE 120

Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVNNALK 130
           NLDE+KK+ +     G+KLG +NEA +L+NS+ DTYK+V   LK
Sbjct: 121 NLDEFKKLTNALNQTGEKLGAENEAAILINSIHDTYKEVKTGLK 164

BLAST of CaUC08G142670 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.8e-22
Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = 0

Query: 1   MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLP-NIAKAQ--------- 60
           M+S RF++  F+G GDF LW+ KIRA+L Q K  K +LD   LP NI +++         
Sbjct: 1   MASTRFEVSKFNGHGDFSLWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAY 60

Query: 61  -------------------------EKLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
                                    +KLESL  TK L NK+++ E FF +KMD SK+  E
Sbjct: 61  STILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEE 120

Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVNNALK 130
           NLDE++KIV +  ++G+K+ D+N+A +LLNSL +TY++V  A+K
Sbjct: 121 NLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIK 163

BLAST of CaUC08G142670 vs. ExPASy TrEMBL
Match: A0A5D3BRB2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2454G00070 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 64/165 (38.79%), Postives = 93/165 (56.36%), Query Frame = 0

Query: 1   MSSIRFKIENFDGKGDFGLWKAKIRAVLDQQKAHKALLDSSTLP---------------- 60
           M+S RF++  F+  GDF LW+ KIRA+L Q K  K +LD   LP                
Sbjct: 1   MASTRFEVSKFNVNGDFALWRKKIRAILVQHKVAK-ILDEGRLPANITENEKRDMDEMAY 60

Query: 61  --------------------NIAKAQEKLESLLATKDLPNKMFLGETFFTFKMDASKTYI 120
                                 A+  +KLESL  TK LPNK+++ E FF +KMD SK+  
Sbjct: 61  STILMYLSVEVLRLVDETTTTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLE 120

Query: 121 ENLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVNNALK 130
           ENL+E++KIV +  ++G+K+ D+N+A +LLNSL +TY++V  A+K
Sbjct: 121 ENLNEFQKIVVDLNNIGEKMSDENQAIILLNSLPETYREVKAAIK 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038896323.18.3e-4061.49uncharacterized protein LOC120084587 [Benincasa hispida][more]
XP_038882247.14.4e-2544.52uncharacterized protein LOC120073473 [Benincasa hispida][more]
XP_038904517.11.7e-2443.84uncharacterized protein LOC120090894 [Benincasa hispida][more]
XP_038885928.12.9e-2441.46uncharacterized protein LOC120076236 [Benincasa hispida][more]
XP_038904504.13.2e-2350.39uncharacterized protein LOC120090876 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
P109787.1e-1023.90Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A5D3DNU12.6e-2340.85Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A5A7U2U74.5e-2340.85Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku... [more]
A0A5A7U6R21.3e-2240.85Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7UB253.8e-2240.24Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A5D3BRB21.9e-2138.79Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 49..130
e-value: 2.0E-11
score: 43.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC08G142670.1CaUC08G142670.1mRNA