CaUC08G142490 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC08G142490
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	RNA-binding protein 24
Location	Ciama_Chr08: 3879885 .. 3882936 (+)
RNA-Seq Expression	CaUC08G142490
Synteny	CaUC08G142490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCCATCTAACTTGGCAAGTCAGTTTGGGGATACCACTTACACAAAAGTTTTTGTGGGTGGTTTGGCTTGGGAGACCCACAAAGATACTATGAAGAAATACTTTGAACAATTTGGCGATATCTTGGAGGCTGTTGTTATTACCGACAAAGCCACTGGACGATCCAAAGGCTATGGATTTGTAATCTCTTCTTTCTTTCTTTCTTTCTTTCTTTTTTCTTTCATTCTTCTCGTATCGAGGGTTTTCTTTTGTTTTGTAGGTCACGTTCCGAGAACCCGATGCTGCCATGAGAGCTTGCGTTGATGCTGCTCCGGTCATCGACGGCCGTAGAGCCAATTGCAATCTTGCTTCTCTTGGTGTTCAAAGATCCAAACCCTCCACGCCTAAGCACGGTATGTTCACATTTTTCTATACTTAGATCTAGTTGGGTAATCATTTTGATTTTTACTCTTTTTAAAAAGCCAAATCAAATGGTTATTAGATAGATAGAGTGTGGTTGGATATAATTATTTGATGTTTGGATTTATGAAACATAAAGCTATAAGATTATTGTGTAAGTGTGTTTGATTTGTTTTAAAATTTGTGTTTTAAAGAAAAAAAGAAATGGGAATTGACAGGAGGAGGAGGAGGTGGTGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCACCAACAACTTTCCCTCATTATGCCATCCAGCAAGGGATCCCCTACAATGTCTATGGGTAAATGTTTCTTTTTCATTTTTATTTTTATTTTTATTTTTCTTTTTATTTTCTTTTTTAAAATTCTGATCTAATAATGTTATATTTATTTTTCTCTCTTTTCTCTCTCTACAACGTGACTTGCCAACTCATATCTTCACTTTACTTTATGACTAACAATAAACCCTTTTTTTTCCCTTCTTAATCACTCCAAATTAATTGATGTTGTTTCCTCTTTAAGTTACTACAAAACTTACTTTCCATCTTATGCATTCAATTACCCCTTCCTTTGTTTTACTGCATGCATGGCATTGCATGTATTTTTTTTTAAAAAAAAATTATCTATCTACATTAATTAATTGGGTAGTTAACAATTTCTTGTTAATTAATTTATTATTCTTGCTGTTTTTTTAGGTACTCTTCCTATTCGCCCGACTACACTTACCCTACGGTTTGTACAATCTTTTTCTAGTTCTACAAATCATTTCAGTATCTTTTACCTTTAATTTCATAAATGAAATGGAATAATTATTGAAAAAAATGTATATACTAATAAAAGGGTTTTAAGAAACATAGTACTCTTAGACTACGCACATTTTTTGTACAGCTTACTTACAAATTGTCATATAACAAATTTTTATTTTTTATAATGAAAATGAATGTGGCCTAACTTCATTTAAATATTACTCTTTTTAATATTCCTGATGTGGAGAAGACTATAATGAAAGTGAATTGAAATAAAAGAATCTGTAAATTGTCTGGTCAAACTGTTGAAAAGTGAAAGTTGAGAGAACCAATCTGATGTTCCTTCTCTTGTCGTTTTATCCGACAATTTTTGTTTCCACATTTAATATTTTGTAACAGTATATCACTTTGTTACAGTTGTTTTTTCTTTTTTTCTTTTTTTAATGAGTTATTGTTACAGTTTTCGTTACACGTTCTTTCATGCACATAATCATGAAACTGCCGACTCCAAGCCGACCAGACTTTAGAGTGGAAAATATTTGATAGATCACATTCAAACATCTCACTTAATTAAATGTTTAATCACAAGTTATTATGAATATTTTTTTTAAGAAAGCATATTTTTTTATAAATATTTTGCTAAAAAGAAACACTACGCTACTGAGTTTTGATTCAAGAATATGAAATATTATCAATTATCATGGACATAGGCTTAAAGAAATGTAAATGAAAATGGTAGTGTTTATTATTATTATTTATGTTTGGGGTATTGAATTAAATATTCAGAGCTATTACAATGTTTACGGCGGGGCAACTGCACAGTACCCCATGTACGGTACGGGTCCCGGCGGCATATTGAGCGGAGCGGCAGCGGCGGCAGCAGCATTCTACCCATATTTCCAATTCGGGGAAGGCAGCGGTGGCGGCGGTTCGGGGCAGCAAGGGTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCAGCGGCCATTAATTCAACTGCTGCAACGACCTTCCCTCAGCACTATGCTGCTCCTCCTATGTCTCTGCCTCCCACGCCCCCCACCTTGCCATCAGGTTTGTTTGTTGCTCATTCCTTTTTTCTCTTTCTCTTTTTTTTTTTTCAAGATTAAAAAATTATGTTCATGTTCTTGTTTCAATTTTATTAAATTAAACATGCAGTCTAGATCAATTATATTAATCAAAAACATGTTTTATTTACATTTCTTTTAAAATAAAAACATATATATAGTTAAGAAAACATATAAACATGTGGAGTAACGTGTATAAGCTTGATTTTTTAATAACAGAAAATAGAAGATAAAGGTTAAGTAAGATAACAAATTTGGTTTTTATTTTTTAGTTTTCAAAACTTGGCTTACAATTATCAACAAAATTTTTTATTTCACACTCCAAGTTCGAACATGCTTACATGATATGACATTTACTAAGTTGGCAAATTGTTTGTTTAAAAATAAAATTTCAAAAGGCTTGAATCCATCAACTTTAGTATACATTATTGAAGAGAAGCACATGGCTTTCATCACAAATTTTATATAAAAAATTGGCTAAAATTTTCACTATTGGTTGGATTTACACATCCAAGAACTCAAAGGAGATAAAAGAAAAGAGAAGAAATCATCAAATGGAATGGATTAAATTGAAAACAAAAAAGTAAAAGATTAAGGATAATAAGTAGATATATTTAGTTTATTTATTTTAAATAAATTTATTTAAATTGGGGTGAGTGTGAAAGAAAGACGTACTAATATCTTTGACAGTGTTTTTTGCTGTTCCACAGGCGTAACCATGGCTCTTCCTGCACCAATCCCACATCGTTAG

mRNA sequence

ATGACTCCATCTAACTTGGCAAGTCAGTTTGGGGATACCACTTACACAAAAGTTTTTGTGGGTGGTTTGGCTTGGGAGACCCACAAAGATACTATGAAGAAATACTTTGAACAATTTGGCGATATCTTGGAGGCTGTTGTTATTACCGACAAAGCCACTGGACGATCCAAAGGCTATGGATTTGTCACGTTCCGAGAACCCGATGCTGCCATGAGAGCTTGCGTTGATGCTGCTCCGGTCATCGACGGCCGTAGAGCCAATTGCAATCTTGCTTCTCTTGGTGTTCAAAGATCCAAACCCTCCACGCCTAAGCACGAAAAAAAGAAATGGGAATTGACAGGAGGAGGAGGAGGTGGTGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCACCAACAACTTTCCCTCATTATGCCATCCAGCAAGGGATCCCCTACAATGTCTATGGGTACTCTTCCTATTCGCCCGACTACACTTACCCTACGAGCTATTACAATGTTTACGGCGGGGCAACTGCACAGTACCCCATGTACGGTACGGGTCCCGGCGGCATATTGAGCGGAGCGGCAGCGGCGGCAGCAGCATTCTACCCATATTTCCAATTCGGGGAAGGCAGCGGTGGCGGCGGTTCGGGGCAGCAAGGGTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCAGCGGCCATTAATTCAACTGCTGCAACGACCTTCCCTCAGCACTATGCTGCTCCTCCTATGTCTCTGCCTCCCACGCCCCCCACCTTGCCATCAGGCGTAACCATGGCTCTTCCTGCACCAATCCCACATCGTTAG

Coding sequence (CDS)

ATGACTCCATCTAACTTGGCAAGTCAGTTTGGGGATACCACTTACACAAAAGTTTTTGTGGGTGGTTTGGCTTGGGAGACCCACAAAGATACTATGAAGAAATACTTTGAACAATTTGGCGATATCTTGGAGGCTGTTGTTATTACCGACAAAGCCACTGGACGATCCAAAGGCTATGGATTTGTCACGTTCCGAGAACCCGATGCTGCCATGAGAGCTTGCGTTGATGCTGCTCCGGTCATCGACGGCCGTAGAGCCAATTGCAATCTTGCTTCTCTTGGTGTTCAAAGATCCAAACCCTCCACGCCTAAGCACGAAAAAAAGAAATGGGAATTGACAGGAGGAGGAGGAGGTGGTGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCACCAACAACTTTCCCTCATTATGCCATCCAGCAAGGGATCCCCTACAATGTCTATGGGTACTCTTCCTATTCGCCCGACTACACTTACCCTACGAGCTATTACAATGTTTACGGCGGGGCAACTGCACAGTACCCCATGTACGGTACGGGTCCCGGCGGCATATTGAGCGGAGCGGCAGCGGCGGCAGCAGCATTCTACCCATATTTCCAATTCGGGGAAGGCAGCGGTGGCGGCGGTTCGGGGCAGCAAGGGTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCAGCGGCCATTAATTCAACTGCTGCAACGACCTTCCCTCAGCACTATGCTGCTCCTCCTATGTCTCTGCCTCCCACGCCCCCCACCTTGCCATCAGGCGTAACCATGGCTCTTCCTGCACCAATCCCACATCGTTAG

Protein sequence

MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR

Homology

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BLAST of CaUC08G142490 vs. NCBI nr
Match: XP_038890037.1 (RNA-binding protein 24 isoform X1 [Benincasa hispida])

HSP 1 Score: 552.7 bits (1423), Expect = 1.8e-153
Identity = 278/289 (96.19%), Postives = 280/289 (96.89%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGG-- 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGG  
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120

Query: 121 --GGRNFRVLSS-FQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTS 180
             GGRNFRVLSS FQTGFGGNVGSAFHSPTTFPHYAI QGIPYN+YGYSSYSPDYTYPTS
Sbjct: 121 GVGGRNFRVLSSNFQTGFGGNVGSAFHSPTTFPHYAIHQGIPYNLYGYSSYSPDYTYPTS 180

Query: 181 YYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHH 240
           YYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQ GYGVQYPHH
Sbjct: 181 YYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQHGYGVQYPHH 240

Query: 241 LFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285
           LFQYS AINS+AATTF QHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 LFQYSTAINSSAATTFSQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 289

[Close]

BLAST of CaUC08G142490 vs. NCBI nr
Match: XP_011656046.1 (RNA-binding protein 24 isoform X1 [Cucumis sativus] >XP_016902396.1 PREDICTED: RNA-binding protein 24 isoform X1 [Cucumis melo])

HSP 1 Score: 550.1 bits (1416), Expect = 1.2e-152
Identity = 278/286 (97.20%), Postives = 281/286 (98.25%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT GGGGG 
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT-GGGGGR 120

Query: 121 RNFRVLSS-FQTGFGGNVGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYN 180
            NFRVLSS FQ+GFGGNVGSAFHSP TTFPHYAIQQGIPYN+YGYSSYSPDYTYPTSYYN
Sbjct: 121 NNFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYN 180

Query: 181 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ 240
           VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ
Sbjct: 181 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ 240

Query: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285
           YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285

[Close]

BLAST of CaUC08G142490 vs. NCBI nr
Match: XP_022157230.1 (RNA-binding protein 24 isoform X1 [Momordica charantia])

HSP 1 Score: 531.2 bits (1367), Expect = 5.6e-147
Identity = 269/292 (92.12%), Postives = 279/292 (95.55%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+NLA+QFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLATQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT  GGGGG
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT--GGGGG 120

Query: 121 RNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYNVY 180
           RNFRVLSSFQ+GFGGNVGSAFHS  TFPHYA+QQGIPYN+YGYSSYSPDYTYPTSYYNVY
Sbjct: 121 RNFRVLSSFQSGFGGNVGSAFHSAATFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVY 180

Query: 181 GGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGG-------GSGQQ-GYGVQY 240
           GGATAQYPMYGTGPGGI++GAAAAAAAFYPYFQFGEGSGGG       GSGQQ GYGVQY
Sbjct: 181 GGATAQYPMYGTGPGGIMNGAAAAAAAFYPYFQFGEGSGGGGGNGFTAGSGQQGGYGVQY 240

Query: 241 PHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285
           PHHLFQYSAAINS +AT+FPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 PHHLFQYSAAINS-SATSFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 289

[Close]

BLAST of CaUC08G142490 vs. NCBI nr
Match: XP_022930178.1 (RNA-binding protein 38 isoform X1 [Cucurbita moschata] >XP_022974074.1 RNA-binding protein 38 isoform X1 [Cucurbita maxima])

HSP 1 Score: 530.4 bits (1365), Expect = 9.5e-147
Identity = 269/290 (92.76%), Postives = 272/290 (93.79%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT  GGGGG
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT--GGGGG 120

Query: 121 RNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYNVY 180
           RNFRVLSSFQTGFGGNVGSAFHS  TFPHYAI QGIPYN+YGYSSYSPDY YPTSYYNVY
Sbjct: 121 RNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVY 180

Query: 181 GGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG------GGSGQQGYGVQYPH 240
           GGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG      GGSGQQGYGVQYPH
Sbjct: 181 GGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPH 240

Query: 241 HLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285
           HL QYSAA+NST  TTFPQHYAAPPMSLPPTPPTLPSGVTMALP PIPHR
Sbjct: 241 HLLQYSAALNST-PTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 287

[Close]

BLAST of CaUC08G142490 vs. NCBI nr
Match: XP_016902398.1 (PREDICTED: RNA-binding protein 24 isoform X3 [Cucumis melo] >XP_031741591.1 RNA-binding protein 24 isoform X3 [Cucumis sativus])

HSP 1 Score: 529.3 bits (1362), Expect = 2.1e-146
Identity = 270/286 (94.41%), Postives = 273/286 (95.45%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPKH         GGGGG 
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKH---------GGGGGR 120

Query: 121 RNFRVLSS-FQTGFGGNVGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYN 180
            NFRVLSS FQ+GFGGNVGSAFHSP TTFPHYAIQQGIPYN+YGYSSYSPDYTYPTSYYN
Sbjct: 121 NNFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYN 180

Query: 181 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ 240
           VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ
Sbjct: 181 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ 240

Query: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285
           YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 277

[Close]

BLAST of CaUC08G142490 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.6e-26
Identity = 102/272 (37.50%), Postives = 136/272 (50.00%), Query Frame = 0


Query: 2   TPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGF 61
           T +N+   FGDT  TKVFVGGLAW+THK+ M  +F ++GDILEAV+I+DK T RSKGYGF
Sbjct: 3   TSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62

Query: 62  VTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGR 121
           VTF++  AA RAC D+ P+I+GRRANCNLASLG +  K  T    ++      G   G R
Sbjct: 63  VTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQ------GPKNGNR 122

Query: 122 NFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQ----QGIPYNVYGYSSYSPDYTYPTSYY 181
                 +     G +  S ++ P+ F +   Q    Q +P+  YGY S    Y  P   +
Sbjct: 123 ------ATPPHVGNH--SQWYYPSGFTNQQHQQQNHQAVPF--YGYPS---AYVAPNMTF 182

Query: 182 NVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEG--SGGGGSGQQGYGVQYPHH 241
           N   G      M G          +     +Y +  +G G    G  S    +   YP+H
Sbjct: 183 NQKVGYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYH 242

Query: 242 LFQYSAAINSTAATTFPQHYAAPPMSLPPTPP 268
             Q         A  FPQ   + P+S   TPP
Sbjct: 243 QSQ---------AIGFPQPSFSKPLSF-STPP 245

[Close]

BLAST of CaUC08G142490 vs. ExPASy Swiss-Prot
Match: Q6P8A7 (RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.1e-23
Identity = 93/247 (37.65%), Postives = 119/247 (48.18%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTTYTK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGRNFRVLSSFQT 131
           RAC D  P+IDGR+AN NLA LG   +KP                       R++   Q 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG---AKP-----------------------RIM---QP 126

Query: 132 GFGGNVGSAFHSPTTFPHYAIQQ---GIP-YNVYGYSSYSPDYTYPTSYYNVYGGATAQY 191
           GF   V           H A+ Q   GIP + VY ++   P    P         +T+ Y
Sbjct: 127 GFAFGVQQI--------HPALIQRPFGIPAHYVYPHAFVQPGVVIP-HVQQAAAASTSPY 186

Query: 192 PMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTA 251
             Y +      S AAAAAAA+  Y      +  G     GYG   P  L   +    + A
Sbjct: 187 IDYTSAAYAQYSAAAAAAAAYDQYPYAASPATTGYVTTAGYGYAVPQPLTAAAPGTAAAA 215

Query: 252 ATTFPQH 255
           A  F Q+
Sbjct: 247 AAAFGQY 215

[Close]

BLAST of CaUC08G142490 vs. ExPASy Swiss-Prot
Match: Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.2e-23
Identity = 97/258 (37.60%), Postives = 123/258 (47.67%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTTYTK+FVGGL + T   +++KYFE FG+I EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGRNFRVLSSFQT 131
           RAC D  P+IDGR+AN NLA LG   +KP                       RV+   Q 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG---AKP-----------------------RVM---QP 126

Query: 132 GFGGNVGSAFHSPTTFPHYAIQQ--GIP-YNVYGYSSYSPDYTYP------------TSY 191
           GF       F  P   P + IQ+  GIP + VY  +   P    P            + Y
Sbjct: 127 GF------TFGVPQIHPAF-IQRPYGIPTHYVYPQAFMQPSVVIPHIQPTATSATASSPY 186

Query: 192 YNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHL 251
            +  G A AQY    T        AAAAA   YPY      +G   +   GY +Q P  L
Sbjct: 187 IDYTGAAYAQYASAAT-------AAAAAAYEQYPYAASPAATGYVAAAGYGYAMQQP--L 219

Query: 252 FQYSAAINSTAATTFPQH 255
              +    + AA  F Q+
Sbjct: 247 ATAAPGSAAAAAAAFGQY 219

[Close]

BLAST of CaUC08G142490 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.8e-23
Identity = 93/239 (38.91%), Postives = 120/239 (50.21%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTTYTK+FVGGL + T   +++KYFE FG+I EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGRNFRVLSSFQT 131
           RAC D  P+IDGR+AN NLA LG   +KP           +   G   G      +  Q 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG---AKP----------RIMQPGFAFGVQQLHPALIQR 126

Query: 132 GFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYNVYGGATAQYPMYG 191
            FG        +   +P   +Q G+   V  +   +      T Y +  G A AQY    
Sbjct: 127 PFG------IPAHYVYPQAFVQPGV---VIPHVQPTAAAASTTPYIDYTGAAYAQY---- 186

Query: 192 TGPGGILSGAAAAAAAF--YPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAA 249
                  + AAAAAAA+  YPY      +G   +G  GY VQ P      +AA   TAA
Sbjct: 187 ----SAAAAAAAAAAAYDQYPYAASPAAAGYVTAGGYGYAVQQP-----ITAAAPGTAA 210

[Close]

BLAST of CaUC08G142490 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.8e-23
Identity = 85/214 (39.72%), Postives = 103/214 (48.13%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTT+TK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGRNFRVLSSFQT 131
           RAC D  P+IDGR+AN NLA LG   +KP                           S QT
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG---AKP--------------------------RSIQT 126

Query: 132 GFGGNVGSAFHSPTTF-------PHYAIQQG-------IPYNVYGYSSYSPDYTYPTSYY 191
           GF   +G     P          PHY   Q        IP  V   +S   DYT  +  Y
Sbjct: 127 GF--TIGVQQLHPAFIQRPFGLTPHYVYPQAIIQPSVVIPTPVQSIASPYIDYTAASQAY 179

Query: 192 NVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPY 212
           + Y   TA Y  Y          AA+ AA F  Y
Sbjct: 187 SQY--TTAAYDQY--------PYAASPAAGFVGY 179

[Close]

BLAST of CaUC08G142490 vs. ExPASy TrEMBL
Match: A0A1S4E2E1 (RNA-binding protein 24 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 5.6e-153
Identity = 278/286 (97.20%), Postives = 281/286 (98.25%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT GGGGG 
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT-GGGGGR 120

Query: 121 RNFRVLSS-FQTGFGGNVGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYN 180
            NFRVLSS FQ+GFGGNVGSAFHSP TTFPHYAIQQGIPYN+YGYSSYSPDYTYPTSYYN
Sbjct: 121 NNFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYN 180

Query: 181 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ 240
           VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ
Sbjct: 181 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ 240

Query: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285
           YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285

[Close]

BLAST of CaUC08G142490 vs. ExPASy TrEMBL
Match: A0A6J1DSJ0 (RNA-binding protein 24 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023991 PE=4 SV=1)

HSP 1 Score: 531.2 bits (1367), Expect = 2.7e-147
Identity = 269/292 (92.12%), Postives = 279/292 (95.55%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+NLA+QFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLATQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT  GGGGG
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT--GGGGG 120

Query: 121 RNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYNVY 180
           RNFRVLSSFQ+GFGGNVGSAFHS  TFPHYA+QQGIPYN+YGYSSYSPDYTYPTSYYNVY
Sbjct: 121 RNFRVLSSFQSGFGGNVGSAFHSAATFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVY 180

Query: 181 GGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGG-------GSGQQ-GYGVQY 240
           GGATAQYPMYGTGPGGI++GAAAAAAAFYPYFQFGEGSGGG       GSGQQ GYGVQY
Sbjct: 181 GGATAQYPMYGTGPGGIMNGAAAAAAAFYPYFQFGEGSGGGGGNGFTAGSGQQGGYGVQY 240

Query: 241 PHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285
           PHHLFQYSAAINS +AT+FPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 PHHLFQYSAAINS-SATSFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 289

[Close]

BLAST of CaUC08G142490 vs. ExPASy TrEMBL
Match: A0A6J1IGG9 (RNA-binding protein 38 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE=4 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 4.6e-147
Identity = 269/290 (92.76%), Postives = 272/290 (93.79%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT  GGGGG
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT--GGGGG 120

Query: 121 RNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYNVY 180
           RNFRVLSSFQTGFGGNVGSAFHS  TFPHYAI QGIPYN+YGYSSYSPDY YPTSYYNVY
Sbjct: 121 RNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVY 180

Query: 181 GGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG------GGSGQQGYGVQYPH 240
           GGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG      GGSGQQGYGVQYPH
Sbjct: 181 GGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPH 240

Query: 241 HLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285
           HL QYSAA+NST  TTFPQHYAAPPMSLPPTPPTLPSGVTMALP PIPHR
Sbjct: 241 HLLQYSAALNST-PTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 287

[Close]

BLAST of CaUC08G142490 vs. ExPASy TrEMBL
Match: A0A6J1EUB1 (RNA-binding protein 38 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436682 PE=4 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 4.6e-147
Identity = 269/290 (92.76%), Postives = 272/290 (93.79%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT  GGGGG
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT--GGGGG 120

Query: 121 RNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYNVY 180
           RNFRVLSSFQTGFGGNVGSAFHS  TFPHYAI QGIPYN+YGYSSYSPDY YPTSYYNVY
Sbjct: 121 RNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVY 180

Query: 181 GGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG------GGSGQQGYGVQYPH 240
           GGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG      GGSGQQGYGVQYPH
Sbjct: 181 GGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPH 240

Query: 241 HLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285
           HL QYSAA+NST  TTFPQHYAAPPMSLPPTPPTLPSGVTMALP PIPHR
Sbjct: 241 HLLQYSAALNST-PTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 287

[Close]

BLAST of CaUC08G142490 vs. ExPASy TrEMBL
Match: A0A1S4E2E8 (RNA-binding protein 24 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 1.0e-146
Identity = 270/286 (94.41%), Postives = 273/286 (95.45%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPKH         GGGGG 
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKH---------GGGGGR 120

Query: 121 RNFRVLSS-FQTGFGGNVGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYN 180
            NFRVLSS FQ+GFGGNVGSAFHSP TTFPHYAIQQGIPYN+YGYSSYSPDYTYPTSYYN
Sbjct: 121 NNFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYN 180

Query: 181 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ 240
           VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ
Sbjct: 181 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ 240

Query: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285
           YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 277

[Close]

BLAST of CaUC08G142490 vs. TAIR 10
Match: AT1G33470.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-70
Identity = 157/269 (58.36%), Postives = 188/269 (69.89%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTT+TKVFVGGLAWETHK +++ YFEQFGDI+EAVVITDK++GRSKGYGFVTF +P+AA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGRNFRVLSSFQT 131
           +ACVD APVIDGRRANCNLA+ GVQRSKPS+P H          G  GGR  +V S F+T
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIH----------GHVGGRGMKVTSPFKT 122

Query: 132 GFGGNVGSAFHSPTTFPHYAIQQGIPY-NVYGYSSYSPDYTYPTSYYNVYGGATAQYPMY 191
            F G   +A  SP  F HY     +PY N +G+SSYS DY YPTSYYNVYGGATAQ+PMY
Sbjct: 123 HF-GTAATAIPSPLPFSHYT----LPYTNPFGFSSYSMDYNYPTSYYNVYGGATAQHPMY 182

Query: 192 GTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYG-VQYPHHLFQYSAAINSTAAT 251
           G+GP  +   AAA AA FYPY QF EG+G       GY  + YP+H+F YSA        
Sbjct: 183 GSGP--MTGVAAAPAAGFYPYLQFAEGNG----PVTGYAPLHYPNHMFHYSA-----PGG 242

Query: 252 TFPQHYAAPPMSLPPTPPTLPSGVTMALP 279
            +P H+   P+SL P+ P +PS V  A+P
Sbjct: 243 NYP-HHNGSPVSLAPS-PVIPS-VCFAVP 242

[Close]

BLAST of CaUC08G142490 vs. TAIR 10
Match: AT1G33470.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 259.6 bits (662), Expect = 2.9e-69
Identity = 157/270 (58.15%), Postives = 188/270 (69.63%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTT+TKVFVGGLAWETHK +++ YFEQFGDI+EAVVITDK++GRSKGYGFVTF +P+AA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGRNFRVLSSFQT 131
           +ACVD APVIDGRRANCNLA+ GVQRSKPS+P H          G  GGR  +V S F+T
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIH----------GHVGGRGMKVTSPFKT 122

Query: 132 GFGGNVGSAFHSPTTFPHYAIQQGIPY-NVYGYSSYSPDYTYPT-SYYNVYGGATAQYPM 191
            F G   +A  SP  F HY     +PY N +G+SSYS DY YPT SYYNVYGGATAQ+PM
Sbjct: 123 HF-GTAATAIPSPLPFSHYT----LPYTNPFGFSSYSMDYNYPTQSYYNVYGGATAQHPM 182

Query: 192 YGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYG-VQYPHHLFQYSAAINSTAA 251
           YG+GP  +   AAA AA FYPY QF EG+G       GY  + YP+H+F YSA       
Sbjct: 183 YGSGP--MTGVAAAPAAGFYPYLQFAEGNG----PVTGYAPLHYPNHMFHYSA-----PG 242

Query: 252 TTFPQHYAAPPMSLPPTPPTLPSGVTMALP 279
             +P H+   P+SL P+ P +PS V  A+P
Sbjct: 243 GNYP-HHNGSPVSLAPS-PVIPS-VCFAVP 243

[Close]

BLAST of CaUC08G142490 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 233.0 bits (593), Expect = 2.9e-61
Identity = 144/257 (56.03%), Postives = 167/257 (64.98%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAA 70
           GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGRNFRV-LSSF 130
             ACVDA PVIDGRRANCNLASLG+QRSKPSTP H         GGGG   N RV +S+ 
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH---------GGGGRINNMRVMMSTM 127

Query: 131 QTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDY-TYPTSYYNVYGGAT-AQY 190
           QTGFG         P TF HY     +P N++GYS YSPDY ++PT+ Y +YG  +  QY
Sbjct: 128 QTGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQY 187

Query: 191 PMYG--TGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINS 250
            +YG     GG L+ AAA+A  FYP        GG G  Q      + HHL  Y+     
Sbjct: 188 GVYGNRNSGGGGLTAAAASATPFYPC------GGGHGGVQFSQPQPFYHHLSSYN----- 232

Query: 251 TAATTFPQHYAAPPMSL 263
                 P HY+ P  S+
Sbjct: 248 ------PHHYSPPTFSM 232

[Close]

BLAST of CaUC08G142490 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 231.5 bits (589), Expect = 8.5e-61
Identity = 148/272 (54.41%), Postives = 172/272 (63.24%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAA 70
           GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGRNFRV-LSSF 130
             ACVDA PVIDGRRANCNLASLG+QRSKPSTP H         GGGG   N RV +S+ 
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH---------GGGGRINNMRVMMSTM 127

Query: 131 QTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDY-TYPTSYYNVYGGAT-AQY 190
           QTGFG         P TF HY     +P N++GYS YSPDY ++PT+ Y +YG  +  QY
Sbjct: 128 QTGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQY 187

Query: 191 PMYG--TGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINS 250
            +YG     GG L+ AAA+A  FYP        GG G  Q      + HHL  Y+     
Sbjct: 188 GVYGNRNSGGGGLTAAAASATPFYPC------GGGHGGVQFSQPQPFYHHLSSYN----- 247

Query: 251 TAATTFPQHYAAPPMSL-------PPTPPTLP 271
                 P HY+ P  S+       P  PP +P
Sbjct: 248 ------PHHYSPPTFSMQQGVTGFPLQPPLIP 247

[Close]

BLAST of CaUC08G142490 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 228.0 bits (580), Expect = 9.4e-60
Identity = 147/276 (53.26%), Postives = 172/276 (62.32%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAA 70
           GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGRNFRV-LSSF 130
             ACVDA PVIDGRRANCNLASLG+QRSKPSTP H         GGGG   N RV +S+ 
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH---------GGGGRINNMRVMMSTM 127

Query: 131 QTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDY-TYPTSYYNVYGGAT-AQY 190
           QTGFG         P TF HY     +P N++GYS YSPDY ++PT+ Y +YG  +  QY
Sbjct: 128 QTGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQY 187

Query: 191 PMYG--TGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINS 250
            +YG     GG L+ AAA+A  FYP        GG G  Q      + HHL  Y+     
Sbjct: 188 GVYGNRNSGGGGLTAAAASATPFYPC------GGGHGGVQFSQPQPFYHHLSSYN----- 247

Query: 251 TAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPI 282
                 P HY+ P  S+        S  T +   P+
Sbjct: 248 ------PHHYSPPTFSMQQGSRNRLSASTTSYSLPL 251

The following BLAST results are available for this feature:

BLAST of CaUC08G142490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890037.1	1.8e-153	96.19	RNA-binding protein 24 isoform X1 [Benincasa hispida]	[more]
XP_011656046.1	1.2e-152	97.20	RNA-binding protein 24 isoform X1 [Cucumis sativus] >XP_016902396.1 PREDICTED: R...	[more]
XP_022157230.1	5.6e-147	92.12	RNA-binding protein 24 isoform X1 [Momordica charantia]	[more]
XP_022930178.1	9.5e-147	92.76	RNA-binding protein 38 isoform X1 [Cucurbita moschata] >XP_022974074.1 RNA-bindi...	[more]
XP_016902398.1	2.1e-146	94.41	PREDICTED: RNA-binding protein 24 isoform X3 [Cucumis melo] >XP_031741591.1 RNA-...	[more]

BLAST of CaUC08G142490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	8.6e-26	37.50	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q6P8A7	3.1e-23	37.65	RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1	[more]
Q76LC6	5.2e-23	37.60	RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1	[more]
Q9BX46	6.8e-23	38.91	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
Q5ZJX4	6.8e-23	39.72	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]

BLAST of CaUC08G142490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E2E1	5.6e-153	97.20	RNA-binding protein 24 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 S...	[more]
A0A6J1DSJ0	2.7e-147	92.12	RNA-binding protein 24 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023991...	[more]
A0A6J1IGG9	4.6e-147	92.76	RNA-binding protein 38 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE...	[more]
A0A6J1EUB1	4.6e-147	92.76	RNA-binding protein 38 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436682 ...	[more]
A0A1S4E2E8	1.0e-146	94.41	RNA-binding protein 24 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 S...	[more]

BLAST of CaUC08G142490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33470.2	1.2e-70	58.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G33470.1	2.9e-69	58.15	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.2	2.9e-61	56.03	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	8.5e-61	54.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	9.4e-60	53.26	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 e-value: 1.2E-21 score: 88.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..73 e-value: 1.7E-15 score: 56.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..100 score: 16.551298
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..119 e-value: 2.9E-23 score: 84.3
None	No IPR available	PANTHER	PTHR11176:SF16	OS01G0876800 PROTEIN	coord: 1..279
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 16..91 e-value: 4.6938E-41 score: 134.665
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..279
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 15..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC08G142490.1	CaUC08G142490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding