CaUC08G141970 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC08G141970
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	succinate dehydrogenase assembly factor 1, mitochondrial-like
Location	Ciama_Chr08: 2077781 .. 2081090 (+)
RNA-Seq Expression	CaUC08G141970
Synteny	CaUC08G141970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGATAGGGAGCAGTATACAATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTTCTCAGTCTATACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCCCTGAAGATCGACGCCAAATCGAATCGATTGTCGCCGCCGAGTTCCGCCGAAACGCCAAGCAAATCGATCGTAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGGTAACAAACAGTTGGATCAACTTAAAAGCGCTGCCACTGTTCGATTGTCTTCGCTCAATCTCAATTCTGAGCCTTGAAATTGTATGTACATTTCTTCGATTCTTGCCTGTTGCTCTTCTCGGTTCTGTTTTGATCCATTTTGAACCCTAGAAAATAAACTGCGATTTATTTGCTTTCTTTCCTCTTGAATTTTGAATCACTCTTTTGATTTGATTTGTTTGTCCTGCATGATTTTGCTTTTGCATTGCAGATCAGTCGGAGTGGGTAGCAGAATCCTTCAAATGCTTGAACATAAGGAGAATGGATTTTGTTCGTTTGTAAACTTAAGGTATGAATCTAGTGGAGTGGCGTGTTTATGATTGATGACCCACCCACGAACAAATATATGAATTTTAATCTTCTGCAAACTCTACCATCATGATAATCATAGTTGGCCGACCTAATGCAATGCTAATTTTTTTATCCAACAAACTAACTGTACACATTCTAACCTATCACTTCTACACGATACCTTATAAAAAAGATTATATAACTGAGTGTACCATCCTAAAAAAGAAGGTATGAACTTACATTATACATTTTTAGTTTTTGGAGAAAGCATAAACTGAGAGCTTTCTCAAGACAAAATGCATTTCTAGTCTTCTTTTGAGTTGATGTCTATTTGATCCTTAAAATTTCAAAATCATGACTTTAGGCCCTGGAGTTAAAGTTGATCGGAAAGGTCTAATTTTATATTATTTATTTAGATGAGGTGAATTTTTTATTTTTTATTTTTCCTTTCTCCTCTCTCTTCACACTCCTCTGCCCTTCCAGACTCTATTCCATCCCTCCACTAAAATCTTGGGTTACATGGGGAAAAAAGTTATCTCTTAAGAGATGTACCCAAAAAGTCATTCTACGCCCAAATTTAAGAGAAAGACCAATTGAAAGAGATGGAAAGAAAAATGAAGAGAAATGAAGAGGAGAGCAATAAAACCAGGTTTAAAACTGAATAAAGAAGAAGAAGAGGGGAACTTGGTGAATTGGTCGTTTTTTATTTTGGCCAGCGAAAAAAGATGTAAAGTGTAAAAATAAAAAGAATGAGAGTAGAGGAAGGCAATGCAACATAATCGTTTTAATTTTTTTTTTTTTATTTCTCCTTCCCCTTTCGTTATTCCATATACCAAACATTCTTCAATCTTATTGTTTATCTTTCATGGCTTCTTGCAAAGCTCTCATCTTTAAACTTCAAATCCTCTCCACATCGCACAATTTAGATCTAGAATTGAAACACTTTTCAAAGCTTTAATTAACTATGATTCAACTTAAATTCAGCTAGTGTACTAAGCCACACAATTTAAATCTTTCTTCACTTACTCTCCTCGAAATTGGACACTTCTCAAAACTTTAGGGGGTGTTTGGGGAACCATAATAGGATAGGTTTGTATTGTAATGTTATCCAAAATGAATGTTTGGATTGAGCGTTTTGGGCCCGATTGGTAACACAAAATTCATTCCATTCCGACAGTTTTCAAGCCAATCCTATTTCACACGGTTTCCATGGTTCGCGATCTTATTTTCATTTATTCCTTTAAGTGTTCACGTATTCCAATACTCCTCTGATTCCTAGTAATCATTTTACATTCCAGCTCTCCAAACAGCCCCTTAATGTGATTTGTAGAGGGTTTGAAGTTCAAAGGCCATGAAAAATATAAAATAATTAAAAGAAAAAACAATTATTCCTAAGATAAAAAGAATATAAAATTAATAAATATTGTGATGTCATTTTTCAATTAGTCAAGGGAGAGTTATAGTTTTTCAAGCAATTCTCTCTAAAATTAAAACCGATAATGATTTTTTTTTATAATATTTTATTTTTGACCAAAACTACCACGAAATCACCTAAGTAACATCTTCTTATCCTAAAATTCTACCAAAATGATAAAAAGTTAAAATAATAATAATAATAATAAGGTTAAATCTTATTTTGTTCCTAAAATTTGAATAATGTTTTATTTTGGTCCCTAAACTTTTAAAAAAGTTTGTTTTAGTCCCTGTATTTTGAACATTGTTTTATTTTGGTCCCTGAACCTTTTAAAATGTTCGTTTGAATAATGTTTTATTTTGGTCCCTAAACTTTTAAAAAAGTTTGTTTTAGTCCCTGAATTTTGAACATTGTTTTATTTTGGTCCCTAAACCTTTTTAAATGTTCGTTTGTCTTTTACTTTTAAAAATTGCTTATTTTGGTACTTGCTATATTAAGATTTTGTTAACTCTTTAATAAAATCAGAAGTGACTTGTAATTTCGAATGACTAGACTACGGAATAAGTTAACTACACTAAAAAATCTATAATTTCTATTTTGAATAAGGTGGCAAAGTGATCAAATTTAAAAGATATTTTTAGTTAAAAAATATAAGTTCCCTCACATTTCTATTGAAGAGTTAACATAATTTTAATAGTAGGGACTAAAATAAACACTTTTTTTAAAAGGTCAGGGACTAAAACGAAGGGTTTTTGAAAGTTTAAGGACTAAAATAGAACAAGATTCAAAGTTCAGAGAGTAAAATAGAATTTAAATCTAATAATAATAATTCTTCATAAAGGAAATAAAGGAAGAGAGAAAAAATTGCTCATAGTAATGAAAATTGCTTCAATTCGCTCAATTCCTTCTCTCTATAATTACGTTAATCCCCACATTTAAATGTAAAAATGATGTATCAACGATTTTAAAATGAACTTTTAAAGGTAATATTTTGATTTATTCACTTTTTAAAATTTATAAATTTAATTGATACAATTATTAGTTTAGAATTTTAAATAATTTGGCCTACAAAGTTTAGGAGTATAATTTAAAAAGTGGGTTCCATTTATTTATGTTTTGGAAAATGTGGGTCCTGTCATAAAATATGTAATCAATAAAGGGGTTGTTTGTTTTGCGGGCATCTGGGCATCCTAGATTCTCATGGAGTGAGCATCCAGATTACCATGTTTGTTTTACGGTTACAATATCTTGACATCAGGAGATTCTCGAGCATCTCAAGAGTTCTGGAGATTCTCGGGCATCTCAAGAGTTTTGGATGCCCTCTTGAAATATGGGTTTTCAGATTTCTGAGTTGA

mRNA sequence

ATGGTAGATAGGGAGCAGTATACAATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTTCTCAGTCTATACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCCCTGAAGATCGACGCCAAATCGAATCGATTGTCGCCGCCGAGTTCCGCCGAAACGCCAAGCAAATCGATCGTAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGCCTTGAAATTATCAGTCGGAGTGGGTAGCAGAATCCTTCAAATGCTTGAACATAAGGAGAATGGATTTTGTTCGTTTGTAAACTTAAGGGGTTGTTTGTTTTGCGGGCATCTGGGCATCCTAGATTCTCATGGAGTGAGCATCCAGATTACCATGTTTGTTTTACGGTTACAATATCTTGACATCAGGAGATTCTCGAGCATCTCAAGAGTTCTGGAGATTCTCGGGCATCTCAAGAGTTTTGGATGCCCTCTTGAAATATGGGTTTTCAGATTTCTGAGTTGA

Coding sequence (CDS)

ATGGTAGATAGGGAGCAGTATACAATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTTCTCAGTCTATACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCCCTGAAGATCGACGCCAAATCGAATCGATTGTCGCCGCCGAGTTCCGCCGAAACGCCAAGCAAATCGATCGTAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGCCTTGAAATTATCAGTCGGAGTGGGTAGCAGAATCCTTCAAATGCTTGAACATAAGGAGAATGGATTTTGTTCGTTTGTAAACTTAAGGGGTTGTTTGTTTTGCGGGCATCTGGGCATCCTAGATTCTCATGGAGTGAGCATCCAGATTACCATGTTTGTTTTACGGTTACAATATCTTGACATCAGGAGATTCTCGAGCATCTCAAGAGTTCTGGAGATTCTCGGGCATCTCAAGAGTTTTGGATGCCCTCTTGAAATATGGGTTTTCAGATTTCTGAGTTGA

Protein sequence

MVDREQYTMAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALKLSVGVGSRILQMLEHKENGFCSFVNLRGCLFCGHLGILDSHGVSIQITMFVLRLQYLDIRRFSSISRVLEILGHLKSFGCPLEIWVFRFLS

Homology

[Close]

BLAST of CaUC08G141970 vs. NCBI nr
Match: KAG6592356.1 (hypothetical protein SDJN03_14702, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-27
Identity = 73/95 (76.84%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 11  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRR 70
           KLSGLQKQVLSLYRAFLRAARSKS EDRRQ+ES+VAAEFRRNAKQIDRKNFIHIEYLLRR
Sbjct: 8   KLSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRR 67

Query: 71  ALKL------SVGVGSRILQMLEHKENGFCSFVNL 100
           AL+       +V VG RI +ML++ +NGF SFV L
Sbjct: 68  ALRFDDQFCRTVQVGGRIFEMLKNVDNGFSSFVRL 102

[Close]

BLAST of CaUC08G141970 vs. NCBI nr
Match: XP_038890134.1 (succinate dehydrogenase assembly factor 1, mitochondrial [Benincasa hispida])

HSP 1 Score: 114.4 bits (285), Expect = 9.4e-22
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 9  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLL 68
          MAKLSGLQKQVLSLYRAFLRAARSKS EDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLL
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLL 60

Query: 69 RRALK 74
          RR  K
Sbjct: 61 RRGNK 65

[Close]

BLAST of CaUC08G141970 vs. NCBI nr
Match: XP_022973474.1 (succinate dehydrogenase assembly factor 1, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 113.2 bits (282), Expect = 2.1e-21
Identity = 67/92 (72.83%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 11  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRR 70
           KLSGLQKQVLSLYRAFLRAARSKS EDRRQ+ESIVAAEFRRNAKQIDRKNFIHIEYLLRR
Sbjct: 8   KLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRR 67

Query: 71  A-LKLSVGVGSRI--LQMLEHKENGFCSFVNL 100
           A +  +    S +  L+ L+ +   F SFV L
Sbjct: 68  ATINFAEQFKSVVESLKCLKMRTMDFSSFVRL 99

[Close]

BLAST of CaUC08G141970 vs. NCBI nr
Match: XP_022925400.1 (succinate dehydrogenase assembly factor 1, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-20
Identity = 65/93 (69.89%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 11  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRR 70
           KLSGLQKQVLSLYR+FLRAARSKS EDRRQ+ES+VAAEFRRNAKQIDRKNFIHIEYLLRR
Sbjct: 8   KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRR 67

Query: 71  ALKLSVGVGSR----ILQMLEHKENGFCSFVNL 100
            + ++ G  S+     L+ L+     F SFV L
Sbjct: 68  -VTINFGKQSKSVVESLKCLKMWTMDFSSFVRL 99

[Close]

BLAST of CaUC08G141970 vs. NCBI nr
Match: KAG7025171.1 (SDH6-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.2 bits (269), Expect = 6.7e-20
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 12 LSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRA 71
          LSGLQKQVLSLYRAFLRAARSKS EDRRQ+ES+VAAEFRRNAKQIDRKNFIHIEYLLRRA
Sbjct: 2  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRA 61

[Close]

BLAST of CaUC08G141970 vs. ExPASy Swiss-Prot
Match: B0K036 (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Rattus norvegicus OX=10116 GN=Sdhaf1 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.7e-05
Identity = 40/94 (42.55%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 9   MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLL 68
           M++LS LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL 
Sbjct: 1   MSRLSRLQRQVLSLYRELLRAGRGKPGAEAR-----VRAEFRQHA-SLPRSDVLRIEYLY 60

Query: 69  RRALKLSVGVGSRILQMLEH-KENGFCSFVNLRG 102
           RR        G R LQ+L         +FV  RG
Sbjct: 61  RR--------GRRQLQLLRSGHATAMGTFVRPRG 80

[Close]

BLAST of CaUC08G141970 vs. ExPASy Swiss-Prot
Match: A8PU71 (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Bos taurus OX=9913 GN=SDHAF1 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.4e-04
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 9   MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLL 68
           M++ S LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL 
Sbjct: 1   MSRHSRLQRQVLSLYRELLRAGRGKPGAEAR-----VRAEFRQHA-CLPRSDVLRIEYLY 60

Query: 69  RRALKLSVGVGSRILQMLEH-KENGFCSFVNLRG 102
           RR        G R LQML         +FV  RG
Sbjct: 61  RR--------GRRQLQMLRSGHATAMGAFVRTRG 80

[Close]

BLAST of CaUC08G141970 vs. ExPASy Swiss-Prot
Match: A6ZYX9 (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=SCY_1267 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.1e-04
Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 11 KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRR 70
          +LSGLQK+VL LYRA +R A +K  E++    + +  EF +  + + RK+F  IE+LLR 
Sbjct: 4  RLSGLQKEVLHLYRASIRTAHTKPKENQVNFVNYIHEEFGK-YRNLPRKDFTTIEHLLR- 63

Query: 71 ALKLSVGVGSRILQMLEHKE 91
                 VG++ +    H E
Sbjct: 64 -------VGNKKIATFSHPE 74

[Close]

BLAST of CaUC08G141970 vs. ExPASy Swiss-Prot
Match: Q3E785 (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SDH6 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.1e-04
Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 11 KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRR 70
          +LSGLQK+VL LYRA +R A +K  E++    + +  EF +  + + RK+F  IE+LLR 
Sbjct: 4  RLSGLQKEVLHLYRASIRTAHTKPKENQVNFVNYIHEEFGK-YRNLPRKDFTTIEHLLR- 63

Query: 71 ALKLSVGVGSRILQMLEHKE 91
                 VG++ +    H E
Sbjct: 64 -------VGNKKIATFSHPE 74

[Close]

BLAST of CaUC08G141970 vs. ExPASy TrEMBL
Match: A0A6J1IEP3 (succinate dehydrogenase assembly factor 1, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111472023 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.0e-21
Identity = 67/92 (72.83%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 11  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRR 70
           KLSGLQKQVLSLYRAFLRAARSKS EDRRQ+ESIVAAEFRRNAKQIDRKNFIHIEYLLRR
Sbjct: 8   KLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRR 67

Query: 71  A-LKLSVGVGSRI--LQMLEHKENGFCSFVNL 100
           A +  +    S +  L+ L+ +   F SFV L
Sbjct: 68  ATINFAEQFKSVVESLKCLKMRTMDFSSFVRL 99

[Close]

BLAST of CaUC08G141970 vs. ExPASy TrEMBL
Match: A0A6J1EHV2 (succinate dehydrogenase assembly factor 1, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111432701 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 8.6e-21
Identity = 65/93 (69.89%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 11  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRR 70
           KLSGLQKQVLSLYR+FLRAARSKS EDRRQ+ES+VAAEFRRNAKQIDRKNFIHIEYLLRR
Sbjct: 8   KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRR 67

Query: 71  ALKLSVGVGSR----ILQMLEHKENGFCSFVNL 100
            + ++ G  S+     L+ L+     F SFV L
Sbjct: 68  -VTINFGKQSKSVVESLKCLKMWTMDFSSFVRL 99

[Close]

BLAST of CaUC08G141970 vs. ExPASy TrEMBL
Match: A0A1S3CAJ2 (succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103498675 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.2e-20
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 9  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLL 68
          MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIVAAEFRRNAKQIDRKNFI+IEYLL
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLL 60

Query: 69 RRALK 74
          RR  K
Sbjct: 61 RRGNK 65

[Close]

BLAST of CaUC08G141970 vs. ExPASy TrEMBL
Match: A0A0A0KST3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649345 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 9  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLL 68
          MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIVA EFRRNAKQIDRKNFI+IEYLL
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLL 60

Query: 69 RRALK 74
          RR  K
Sbjct: 61 RRGNK 65

[Close]

BLAST of CaUC08G141970 vs. ExPASy TrEMBL
Match: A0A6A4MAN8 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_01121 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 8  TMAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYL 67
          T AKLSG+QKQVL LYR FLRAAR+KSPE+RRQIESIV+AEFRRN+K +DRKNFI+IEYL
Sbjct: 5  TGAKLSGMQKQVLGLYRGFLRAARTKSPEERRQIESIVSAEFRRNSKLVDRKNFIYIEYL 64

Query: 68 LRRALKLSVGVGSRILQMLEHKENGFCSFVN 99
          LRR     VGV        E +   F SF++
Sbjct: 65 LRRG---GVGVCMMSNAWKEEQHPAFISFIS 92

[Close]

BLAST of CaUC08G141970 vs. TAIR 10
Match: AT2G39725.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-17
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 10 AKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLR 69
          +KLSG+QKQVLSLYR FLRAARS+  EDR++IE IV+ EFR N+K++DRKNF +IEYLLR
Sbjct: 4  SKLSGMQKQVLSLYRGFLRAARSRPIEDRKRIEMIVSTEFRHNSKEVDRKNFQYIEYLLR 63

Query: 70 RALK 74
             K
Sbjct: 64 LGTK 67

[Close]

BLAST of CaUC08G141970 vs. TAIR 10
Match: AT2G39725.2 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-17
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 10 AKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLR 69
          +KLSG+QKQVLSLYR FLRAARS+  EDR++IE IV+ EFR N+K++DRKNF +IEYLLR
Sbjct: 4  SKLSGMQKQVLSLYRGFLRAARSRPIEDRKRIEMIVSTEFRHNSKEVDRKNFQYIEYLLR 63

Query: 70 RALK 74
             K
Sbjct: 64 LGTK 67

The following BLAST results are available for this feature:

BLAST of CaUC08G141970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592356.1	1.1e-27	76.84	hypothetical protein SDJN03_14702, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038890134.1	9.4e-22	95.38	succinate dehydrogenase assembly factor 1, mitochondrial [Benincasa hispida]	[more]
XP_022973474.1	2.1e-21	72.83	succinate dehydrogenase assembly factor 1, mitochondrial-like [Cucurbita maxima]	[more]
XP_022925400.1	1.8e-20	69.89	succinate dehydrogenase assembly factor 1, mitochondrial-like [Cucurbita moschat...	[more]
KAG7025171.1	6.7e-20	95.00	SDH6-3, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CaUC08G141970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B0K036	3.7e-05	42.55	Succinate dehydrogenase assembly factor 1, mitochondrial OS=Rattus norvegicus OX...	[more]
A8PU71	1.4e-04	42.55	Succinate dehydrogenase assembly factor 1, mitochondrial OS=Bos taurus OX=9913 G...	[more]
A6ZYX9	4.1e-04	37.50	Succinate dehydrogenase assembly factor 1, mitochondrial OS=Saccharomyces cerevi...	[more]
Q3E785	4.1e-04	37.50	Succinate dehydrogenase assembly factor 1, mitochondrial OS=Saccharomyces cerevi...	[more]

BLAST of CaUC08G141970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IEP3	1.0e-21	72.83	succinate dehydrogenase assembly factor 1, mitochondrial-like OS=Cucurbita maxim...	[more]
A0A6J1EHV2	8.6e-21	69.89	succinate dehydrogenase assembly factor 1, mitochondrial-like OS=Cucurbita mosch...	[more]
A0A1S3CAJ2	4.2e-20	89.23	succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucumis melo OX=3656...	[more]
A0A0A0KST3	1.2e-19	87.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649345 PE=4 SV=1	[more]
A0A6A4MAN8	1.2e-19	64.84	Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3...	[more]

BLAST of CaUC08G141970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39725.1	2.5e-17	68.75	LYR family of Fe/S cluster biogenesis protein	[more]
AT2G39725.2	2.5e-17	68.75	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 17..73 e-value: 2.1E-11 score: 43.7
None	No IPR available	PANTHER	PTHR13675:SF1	SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 1, MITOCHONDRIAL	coord: 10..72
None	No IPR available	PANTHER	PTHR13675	LYR MOTIF-CONTAINING PROTEIN 2	coord: 10..72
None	No IPR available	CDD	cd20268	Complex1_LYR_SDHAF1_LYRM8	coord: 13..85 e-value: 6.96593E-23 score: 84.185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC08G141970.1	CaUC08G141970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0034553	mitochondrial respiratory chain complex II assembly
biological_process	GO:0009853	photorespiration
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009536	plastid