CaUC08G141240 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC08G141240
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr08: 645528 .. 646436 (-)
RNA-Seq ExpressionCaUC08G141240
SyntenyCaUC08G141240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTCCTCCCGATCGAAAATGTTGGGATTAATTTCTTGCAGGGGGGTTTCGAAATGGGGAGGTTGTGGCGGCGCCGGATGAGTAGGAGGTGGAGAAGAAAAAGAAGAGGAATCATCATCATCGTGAATTATATACATTCGAAACCCAATATCGCCTTTGATATGAGAGAAAAGGCCACGTTTGTCAAGTGGGTATCTCTGGATATTAGCTTCCTGTTCAGAAAGAGGCACCGACATGCCGGAGATTCTGACACGGCCGAGAAAATCCCGGCGGTGGCCGGATTTCCTCTCGTTAAAAACAACGACATCGATGGTCTTGTTGGGAAAATCTTTAGGGTGGGAGATGTTGAAGAGGAGCTTCTCGTTCCAATAAGGATTGAGGTCTCTGTGTTTGGTATGAGTCCTCTGTTTTTGGTCGTCAAAATCGACCTCCACAAAGGGGTTGGCAGAGTCGCCGTCTTTGGGCATGAGGTCGCCGGCGTCGAGGATTTCGACGACGAGCTTGGTCATGGCGGAAGAAAGGGGAGGGATTGGGGTCTGAATCTGTGACAGAGGAGTGAGAGTGAAGAAGAAGAAGAGAGGTTGGTAGAAGGAAGAGTGGGAGTAAAGAAGAAGAGAAAGGAATAGGCGGTGAAGAAGAAGAAGAAGAGGAAGATGATGAGAATGAGATGATCATTTGGGATTGTTGGAGTATGAAGACAGATACAGATGGTTTTTAGAAAGAGAGAGGGTTTGTTTGTTTGTTTGTTTGGTGGTGGTGGTGTTAAAGTGGATTGTGACTTTGTTTGAGACAGATTCTTGTGTGCTCTAACCCTTTATCAGCCACTCCTCTCCCTCTTCTATGTGTATTTCATACTTTTTTTTTTCCCTGGTATAGTACAGCATAGCATATTAGCAGTTACGTAA

mRNA sequence

ATGAAAAAGAGGCACCGACATGCCGGAGATTCTGACACGGCCGAGAAAATCCCGGCGGTGGCCGGATTTCCTCTCGTTAAAAACAACGACATCGATGGTCTTGTTGGGAAAATCTTTAGGGTGGGAGATGTTGAAGAGGAGCTTCTCGTTCCAATAAGGATTGAGGTCTCTGTGTTTGGTATGAGTCCTCTGTTTTTGGTCGTCAAAATCGACCTCCACAAAGGGGTTGGCAGAGTCGCCGTCTTTGGGCATGAGGTCGCCGGCGTCGAGGATTTCGACGACGAGCTTGGTCATGGCGGAAGAAAGGGGAGGGATTGGGTACAGCATAGCATATTAGCAGTTACGTAA

Coding sequence (CDS)

ATGAAAAAGAGGCACCGACATGCCGGAGATTCTGACACGGCCGAGAAAATCCCGGCGGTGGCCGGATTTCCTCTCGTTAAAAACAACGACATCGATGGTCTTGTTGGGAAAATCTTTAGGGTGGGAGATGTTGAAGAGGAGCTTCTCGTTCCAATAAGGATTGAGGTCTCTGTGTTTGGTATGAGTCCTCTGTTTTTGGTCGTCAAAATCGACCTCCACAAAGGGGTTGGCAGAGTCGCCGTCTTTGGGCATGAGGTCGCCGGCGTCGAGGATTTCGACGACGAGCTTGGTCATGGCGGAAGAAAGGGGAGGGATTGGGTACAGCATAGCATATTAGCAGTTACGTAA

Protein sequence

MKKRHRHAGDSDTAEKIPAVAGFPLVKNNDIDGLVGKIFRVGDVEEELLVPIRIEVSVFGMSPLFLVVKIDLHKGVGRVAVFGHEVAGVEDFDDELGHGGRKGRDWVQHSILAVT
Homology
[Close]
BLAST of CaUC08G141240 vs. NCBI nr
Match: KAG7025207.1 (hypothetical protein SDJN02_14030, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-31
Identity = 72/100 (72.00%), Postives = 83/100 (83.00%), Query Frame = 0 

Query: 5   HRHAGDSDTAEKIPAVAGFPLVKNNDIDGLVGKIFRVGDVEEELLVPIRIEVSVFGMSPL 64
           HRHAGDSDTAEKI AVAGFP+V N+DIDG VG++ RVGDVE E+L+P RIE+ V+G SPL
Sbjct: 173 HRHAGDSDTAEKIAAVAGFPVVINHDIDGGVGELSRVGDVENEILIPARIEIGVYGTSPL 232

Query: 65  FLVVKIDLHKGVGRVAVFGHEVAGVEDFDDELGHGGRKGR 105
           FLV K+DL KGVGRVAV GH+VAGVED  +ELGH   K R
Sbjct: 233 FLVAKVDLDKGVGRVAVLGHKVAGVEDLYNELGHRNLKQR 272

[Close]
BLAST of CaUC08G141240 vs. NCBI nr
Match: KAG6592392.1 (hypothetical protein SDJN03_14738, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.0 bits (367), Expect = 2.0e-31
Identity = 71/98 (72.45%), Postives = 82/98 (83.67%), Query Frame = 0 

Query: 5   HRHAGDSDTAEKIPAVAGFPLVKNNDIDGLVGKIFRVGDVEEELLVPIRIEVSVFGMSPL 64
           HRHAGDSDTAEKI AVAGFP+V N+DIDG VG++ RVGDVE E+L+P RIE+ V+G SPL
Sbjct: 56  HRHAGDSDTAEKIAAVAGFPVVINHDIDGGVGELSRVGDVENEILIPARIEIGVYGTSPL 115

Query: 65  FLVVKIDLHKGVGRVAVFGHEVAGVEDFDDELGHGGRK 103
           FLV K+DL KGVGRVAV GH+VAGVED  +ELGH   K
Sbjct: 116 FLVAKVDLDKGVGRVAVLGHKVAGVEDLYNELGHRNLK 153

[Close]
BLAST of CaUC08G141240 vs. NCBI nr
Match: GER32639.1 (hypothetical protein STAS_08719 [Striga asiatica])

HSP 1 Score: 55.5 bits (132), Expect = 3.6e-04
Identity = 35/92 (38.04%), Postives = 49/92 (53.26%), Query Frame = 0 

Query: 10  DSDTAEKIPAVAGFPLVKNNDIDGLVGKIFRVGDVEEELLVPIRIEVSVFGMSPLFLVVK 69
           D D  EK  A +G  +V   ++  LVG    V D E ELLVP+R+E+   G  P  L V+
Sbjct: 198 DLDLPEKGAAFSGLLVVVEVELQHLVGHGGGVEDGELELLVPLRVEIPEDGPGPAALAVE 257

Query: 70  IDLHKGVGR-VAVFGHEVAGVEDFDDELGHGG 101
           +D   G GR +AV GH+V G+ +   +    G
Sbjct: 258 VDDGVGAGRTLAVLGHQVLGIANLHGQFSTAG 289

[Close]
BLAST of CaUC08G141240 vs. ExPASy TrEMBL
Match: A0A0A0KSX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G652215 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.9e-41
Identity = 87/104 (83.65%), Postives = 96/104 (92.31%), Query Frame = 0 

Query: 2   KKRHRHAGDSDTAEKIPAVAGFPLVKNNDIDGLVGKIFRVGDVEEELLVPIRIEVSVFGM 61
           +KRHRHAGDS+TAEKIPAVAGFPLV N++IDGLVGKIFRVGDVEEELL+P+RIE+S+FGM
Sbjct: 141 RKRHRHAGDSNTAEKIPAVAGFPLVINHNIDGLVGKIFRVGDVEEELLIPVRIEISMFGM 200

Query: 62  SPLFLVVKIDLHKGVGRVAVFGHEVAGVEDFDDELGHGGRKGRD 106
           S LFLVVKI+L KG GRVAVFGHEVAGVEDF  ELGHGG K RD
Sbjct: 201 SSLFLVVKINLDKGAGRVAVFGHEVAGVEDFYYELGHGGGKDRD 244

[Close]
BLAST of CaUC08G141240 vs. ExPASy TrEMBL
Match: A0A7C9DNP1 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.5e-08
Identity = 44/110 (40.00%), Postives = 66/110 (60.00%), Query Frame = 0 

Query: 7   HAGDSDTAEK--IPAVAGFPLVKNNDIDGLVGKIFRVGDVEEELLVPIRIEVSVFGMSPL 66
           H+ + DT +K  +  ++G  ++ N+D++GLV ++  VGD E ELL+P R++V   G+S L
Sbjct: 38  HSSNPDTTQKAVMVVLSGPTVIINSDLNGLVRELPWVGDRENELLIPNRVQVLELGLSLL 97

Query: 67  FLVVKIDLHKGV-GRVAVFGHEVAGVEDFDDEL-----GHGGRKGRDWVQ 109
            LVVK+ L+ G  G  AVF H+V  V  F  +L     G   R+GR W Q
Sbjct: 98  GLVVKVHLYIGAGGPFAVFWHKVRCVLHFHHQLRCRHVGEREREGRWWYQ 147

[Close]
BLAST of CaUC08G141240 vs. ExPASy TrEMBL
Match: A0A7C9DJ16 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.6e-08
Identity = 44/110 (40.00%), Postives = 66/110 (60.00%), Query Frame = 0 

Query: 7   HAGDSDTAEK--IPAVAGFPLVKNNDIDGLVGKIFRVGDVEEELLVPIRIEVSVFGMSPL 66
           H+ + DT +K  +  ++G  ++ N+D++GLV ++  VGD E ELL+P R++V   G+S L
Sbjct: 38  HSRNPDTTQKAVMVVLSGPTVIINSDLNGLVRELPWVGDRENELLIPNRVQVLELGLSLL 97

Query: 67  FLVVKIDLHKGV-GRVAVFGHEVAGVEDFDDEL-----GHGGRKGRDWVQ 109
            LVVK+ L+ G  G  AVF H+V  V  F  +L     G   R+GR W Q
Sbjct: 98  GLVVKVHLYIGAGGPFAVFWHKVRCVLHFHHQLRCRHVGEREREGRWWYQ 147

[Close]
BLAST of CaUC08G141240 vs. ExPASy TrEMBL
Match: A0A5A7PIP9 (Uncharacterized protein OS=Striga asiatica OX=4170 GN=STAS_08719 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-04
Identity = 35/92 (38.04%), Postives = 49/92 (53.26%), Query Frame = 0 

Query: 10  DSDTAEKIPAVAGFPLVKNNDIDGLVGKIFRVGDVEEELLVPIRIEVSVFGMSPLFLVVK 69
           D D  EK  A +G  +V   ++  LVG    V D E ELLVP+R+E+   G  P  L V+
Sbjct: 198 DLDLPEKGAAFSGLLVVVEVELQHLVGHGGGVEDGELELLVPLRVEIPEDGPGPAALAVE 257

Query: 70  IDLHKGVGR-VAVFGHEVAGVEDFDDELGHGG 101
           +D   G GR +AV GH+V G+ +   +    G
Sbjct: 258 VDDGVGAGRTLAVLGHQVLGIANLHGQFSTAG 289

The following BLAST results are available for this feature:
BLAST of CaUC08G141240 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025207.11.2e-3172.00hypothetical protein SDJN02_14030, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6592392.12.0e-3172.45hypothetical protein SDJN03_14738, partial [Cucurbita argyrosperma subsp. sorori... [more]
GER32639.13.6e-0438.04hypothetical protein STAS_08719 [Striga asiatica][more]
BLAST of CaUC08G141240 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC08G141240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSX08.9e-4183.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G652215 PE=4 SV=1[more]
A0A7C9DNP14.5e-0840.00Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A7C9DJ167.6e-0840.00Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A5A7PIP91.8e-0438.04Uncharacterized protein OS=Striga asiatica OX=4170 GN=STAS_08719 PE=4 SV=1[more]
BLAST of CaUC08G141240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC08G141240.1CaUC08G141240.1mRNA