CaUC07G140480 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC07G140480
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	DNA-directed RNA polymerase III subunit rpc4-like
Location	Ciama_Chr07: 31409957 .. 31414199 (-)
RNA-Seq Expression	CaUC07G140480
Synteny	CaUC07G140480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGGTCTAGGGTTCGATCCTTCCTTCTTCTCATTTTGCACCATTTTTTCGCCTTTCCCTTCGTCATCTTCAACCTCGAGGTCATGAGGAATCCCGATCCATCTCCTCCACGCAGAAAGGTAATCCGTATAATTTTCAAATTACAGCTAAATGTTATTTGCTTATTCTTCTTCTTCTTCATCTTTTACTCGATTTAGATCTAAACCCTTCTCCCTCTCTCTCTCTCTCTTCCTACTGCAGGTCAAATTCGCCCCGAAATCTGCACCCCGCAAAAGGCCACCCCCGGTTCAAAAAACGTAGTCCTCTCAATCTCATCTTCTTCCACATTTTGGTTTCTGAATTTGCAAAAGTCTAATTTGTTTGGCGAATTGCAGTGAAGACGAAGATGGTGATGGTTATGTTGCTCAAACTCGGTACCTCTTACGCCGTGCCGCGGTAAGCTTCTTTGATGTTTGCTATGATTTTCGAATTCTTCTGTGTATTTTTGGTTTGATGTTTAGATGATTTTCGCTTTGGAGGATTTGAGATTTCTGGATAAAACATTTGAAACTTTTTTTTTTTTTTTCCTTAGCTGTGACTTGTGAGCAACGCTTTTACTACTGCTTTCCGTTTGGTTGCTGAGAAAATTCTTTGATGGAAATGAATTCGTTCTCGGACAGCGGTTTTTTTTTTTTTTTCAAATTGTTTTTTCTTTTTTGAAGAAGCGATTGGGATTCTCTGGATAAAAATTAAATTAAATTAAGGGTTAAAATATCATTTTCTCTTCGTACTTTTGATCAATTTTAGTTTATGTATCTCTTATTGTTTATTGTTGATTTTTTCAATTTTTTTTGTTTTGTTATCTATTAATATTTTTATTATAAATTTTAAAAACATATTCATAAATTATATTTTCTGTTTAAATACTACTTTCGTTCATATATTTTTTACTTTAGTTCATTTTGGTTTATGTGCTTTTAAACAGTTTATTTTAGGCCCTATACTCTCAACTTTAGTTCATTTTGGTTTATGTGCTTTTAAACAGTTTATTTTAGGCCCTATACTCTCAACTTTAGTTCATTTTGATCCCTATACAATATGTTCAGTTTGGTCCTTATAATTTTAATTTTGGTTCAATTTGGTTCTTATACTTTTAAAAAGCTACTATTTTAGTCCTTTTATTTTCATTTTCATTTCATTCTTAAGAGATCAAAATAGTAACTTTTTTAAAGTTCAAGACCAAAATGAACTAAAGTTGAAAGTATAGAGACAAAATGAACATTTTTAAAGTACATATATCAAAATGAACAAAAGTCAAAAGTGTAGAAACTAAAGTAGTATTTAACCTTTTATTTTCTTATTTTAAAATTATTATTATTATTGTTATTATTTAACTTCTGGGGGCTAAATGTCATGTTTATTGAAAGTATAAGCAGCAAAATTGTATTTTGACCTTAAATTAATTTTAGAGAAAAATTTGTGTGTTTAGTTGACCAACAACCTTTCTTAAATTAACTTTTATCGGGAATTGAGAAAATTTGTAGTAGTACTCTTTTCCATAATTTAATAATCAAATGATGTATTAATTTATTCAATGGACCCCATACTTTTTAAATGCTACTTTTGATTGTAACCATCAATGAATGAAGGTAATATGAAAAATGTGTCTTGGCGTAGTACTAGAAAGAAAATCTTCTCGGATGGGATATGACCATGTGGCATTTACTAATGCTGGTTTTGTAGATGAGTTTTGGATGTTTTAGCTACATTTGAGCATTTTCTTTACTCTATTTTGGACTTTTTCTTTCCTGAATAGTGATTTATATTCTTTAGGTTCAAAGTGAAATTTCATATTCTTTAAGACAATAGTCAAAAATTTGAAGAGCAATTTTCAACAATATCTTAGTACGAAATAATGTTGTTTCGTTTTCAGCGTCATAGATTTATTTTCCTTGATCAAATACCATCTAATTCGCCTGTAAAATATGTCAACATGTTTGAAAACTTAGCCTGTAAGTGTAACTCTATCCCCATGTGATGGCTAGGCAACCAACCAATTGTTTGATTTTCACTTTCTTTACAATAGTAAGAATTGATTTGGTTTTCTTTCCACTTTGCAGGAGAATCTCGGAAAACGAGGCAACAAGGTCGAAAAAAAATGTAAAGTCTAATTTCAAAATTTTTAATTAATATATCAATAGCTCTGTATTCTTTTTAAATGTAATTTGGACCATGTAAACGGATTTGTTTTCATTTGTAAGAGAGTCAACTGCAACAATGTGGTTGAATGTAGGAGTGAGAAATTGCAAAAGTACCCTGAATTAGTATCTAATGATTATTAGGGACATTTAGATTTTAAAATCTACATCCAACCGTTCAATAATTTATGATCACAGAGATGGACTGTATAAGCTTGAGAAAAGAAAATCCCAAGCTTTTAGTAAGGGATGATGAAGATAAAGATGAAGTTTCCATTGTTGCCTTAACATGATCTCTATTTTTCATGTGCATATCTGCAGCTTCAGTGCAAGTTGCATTCGGTCCTGGTGCGGCACCAACATCATCTTCTATTAGAACATATGGCGTTCCCAAAGTAGAAAACAGTAGCAGAAAAAATGACATTGAGCCTGAAGTTGATGAAGATGATGAGTTCATCTTGCCTCTGCCTATGAATGTTGAAGAAGATGGGAAAATTTTCGATAAAATAGGCGAAGATGGTTCGGCTATAGTAACCAAGACCAAGAAGGATTACAAAGAACCTTGGGTAATCTCTCTTTCTTTGTCTTACCGATGACACACACACAAAGATTAACTTCCTGATTTCATGATACTTTTTCAGGATTACCATAATTCTTACTATCCTACTACACTTCCTATACGGATGCCTTACTCTGGAGACCCTGGTATGCCTTTTTCTTTCCCAGAGAGGAATAGCAGAAGTATCACATTTTCCAACTTTAGTTTTTGGTTTGATTAAAATCACTGTTGTGTCATGTTTGATTACACTTCGAAACATGTATTTCTATACCATCAAAATTGATTCTGAATCATTAGAAGTATGTTTAGGAGTGATTCCTAAAATGACAAGAGTGGTTTTAATAATTAATCACTCAAACAAGCTTATAATCAACCTTGAAAACGAAAGTAGACCTTTATGAGTCCTTAGATAAGGGATTGCTCATCTATGCTGAAATAAACTTTTAACCTTGTTGGAGGATCATTCTGGCTTCTTCTGTAGTTCAGCTAACTCTCCTGCCTCTTGTTGGATGTAGAACAACTTGATGAAGTTGAGTTCGGGCAGGATGCGATGGATAGAGAGTACGACGAGAACTCTGTAATACCTGCCTTGGATCTTGGATTGCTGGTTGGTGAATAGATTGATAATTGTGGCTTATTTCATATATTAATCAGTGCTATTTTTTAATTTAGAATCTAATTACGGTGGCCTTTTGATGCAGGATGAAAATACAGAGAATACTAAGTACTTTTTTCAGCTTCCTGCTCGTCTTCCTTTACCCAAACAATCATCTACCGCTACAGGAAAGGAGAAAGCAGGAAATTCAAGATCTTCAAACAGCATGGGCTCATCCGAGCTGGACGATTTGAAGAAATTGTCTGCTGGATGTATGGGGAAACTATTGATATACAAGAGTGGAGCTGTTAAGTTGAGGCTAGGAGATACTCTTTACGACGTGAGTAATGTCGTTAGCTTTCTACAACCGCAAGCATCGTGGAGTTCGTTTTTTGTTGCTGTCTGGATGTAGTTTAGTTAGAGATCATACAATGAGATTTTATTTGGATCTCTTTTGTGGCTGTTGCAGGTTTCTTCTGGTTCAAACTGCAGTTTTCTTCAACATGTTGTGGCAATCAACCCTGAAAAGGGACAGTGCTGCGATCTTGGAGACATTGGCAAACGAGTCGTCGTAACACCGGATATTAGTTCCCTCTTGAATTCAGTGACTGAGTTGGGATGATTGTGAAGAAAAAGCCTGTGGATAGAACAACCGTCTGGCTGTGTAGTGAAGATGCTCACTTAATTAGTATGGAAGTTGGGATGTCAAATTCTCGACTAAACTTTCTCCTCTGTTAATTTCTATTGCAACAAGAACGTACTCATTCTCTTTGATTTCTAGCCGTGGAATAGGCAGGTACCCAACCATGTTGATTGTTGTAAATACCATTTTGTATATGATCTTTCTTGATTGTGGTAACTTATGTTCGGATTCACACCTATCTTGACCGTAATAGATATAAACAAAAATAGG

mRNA sequence

CTGGTCTAGGGTTCGATCCTTCCTTCTTCTCATTTTGCACCATTTTTTCGCCTTTCCCTTCGTCATCTTCAACCTCGAGGTCATGAGGAATCCCGATCCATCTCCTCCACGCAGAAAGGTCAAATTCGCCCCGAAATCTGCACCCCGCAAAAGGCCACCCCCGGTTCAAAAAACTGAAGACGAAGATGGTGATGGTTATGTTGCTCAAACTCGGTACCTCTTACGCCGTGCCGCGCGTCATAGATTTATTTTCCTTGATCAAATACCATCTAATTCGCCTGTAAAATATGTCAACATGTTTGAAAACTTAGCCTGTAAGTGTAACTCTATCCCCATGAGAATCTCGGAAAACGAGGCAACAAGGTCGAAAAAAAATGTAAAAGATGGACTGTATAAGCTTGAGAAAAGAAAATCCCAAGCTTTTACTTCAGTGCAAGTTGCATTCGGTCCTGGTGCGGCACCAACATCATCTTCTATTAGAACATATGGCGTTCCCAAAGTAGAAAACAGTAGCAGAAAAAATGACATTGAGCCTGAAGTTGATGAAGATGATGAGTTCATCTTGCCTCTGCCTATGAATGTTGAAGAAGATGGGAAAATTTTCGATAAAATAGGCGAAGATGGTTCGGCTATAGTAACCAAGACCAAGAAGGATTACAAAGAACCTTGGGATTACCATAATTCTTACTATCCTACTACACTTCCTATACGGATGCCTTACTCTGGAGACCCTGAACAACTTGATGAAGTTGAGTTCGGGCAGGATGCGATGGATAGAGAGTACGACGAGAACTCTGTAATACCTGCCTTGGATCTTGGATTGCTGGATGAAAATACAGAGAATACTAAGTACTTTTTTCAGCTTCCTGCTCGTCTTCCTTTACCCAAACAATCATCTACCGCTACAGGAAAGGAGAAAGCAGGAAATTCAAGATCTTCAAACAGCATGGGCTCATCCGAGCTGGACGATTTGAAGAAATTGTCTGCTGGATGTATGGGGAAACTATTGATATACAAGAGTGGAGCTGTTAAGTTGAGGCTAGGAGATACTCTTTACGACGTTTCTTCTGGTTCAAACTGCAGTTTTCTTCAACATGTTGTGGCAATCAACCCTGAAAAGGGACAGTGCTGCGATCTTGGAGACATTGGCAAACGAGTCGTCGTAACACCGGATATTAGTTCCCTCTTGAATTCAGTGACTGAGTTGGGATGATTGTGAAGAAAAAGCCTGTGGATAGAACAACCGTCTGGCTGTGTAGTGAAGATGCTCACTTAATTAGTATGGAAGTTGGGATGTCAAATTCTCGACTAAACTTTCTCCTCTGTTAATTTCTATTGCAACAAGAACGTACTCATTCTCTTTGATTTCTAGCCGTGGAATAGGCAGGTACCCAACCATGTTGATTGTTGTAAATACCATTTTGTATATGATCTTTCTTGATTGTGGTAACTTATGTTCGGATTCACACCTATCTTGACCGTAATAGATATAAACAAAAATAGG

Coding sequence (CDS)

ATGAGGAATCCCGATCCATCTCCTCCACGCAGAAAGGTCAAATTCGCCCCGAAATCTGCACCCCGCAAAAGGCCACCCCCGGTTCAAAAAACTGAAGACGAAGATGGTGATGGTTATGTTGCTCAAACTCGGTACCTCTTACGCCGTGCCGCGCGTCATAGATTTATTTTCCTTGATCAAATACCATCTAATTCGCCTGTAAAATATGTCAACATGTTTGAAAACTTAGCCTGTAAGTGTAACTCTATCCCCATGAGAATCTCGGAAAACGAGGCAACAAGGTCGAAAAAAAATGTAAAAGATGGACTGTATAAGCTTGAGAAAAGAAAATCCCAAGCTTTTACTTCAGTGCAAGTTGCATTCGGTCCTGGTGCGGCACCAACATCATCTTCTATTAGAACATATGGCGTTCCCAAAGTAGAAAACAGTAGCAGAAAAAATGACATTGAGCCTGAAGTTGATGAAGATGATGAGTTCATCTTGCCTCTGCCTATGAATGTTGAAGAAGATGGGAAAATTTTCGATAAAATAGGCGAAGATGGTTCGGCTATAGTAACCAAGACCAAGAAGGATTACAAAGAACCTTGGGATTACCATAATTCTTACTATCCTACTACACTTCCTATACGGATGCCTTACTCTGGAGACCCTGAACAACTTGATGAAGTTGAGTTCGGGCAGGATGCGATGGATAGAGAGTACGACGAGAACTCTGTAATACCTGCCTTGGATCTTGGATTGCTGGATGAAAATACAGAGAATACTAAGTACTTTTTTCAGCTTCCTGCTCGTCTTCCTTTACCCAAACAATCATCTACCGCTACAGGAAAGGAGAAAGCAGGAAATTCAAGATCTTCAAACAGCATGGGCTCATCCGAGCTGGACGATTTGAAGAAATTGTCTGCTGGATGTATGGGGAAACTATTGATATACAAGAGTGGAGCTGTTAAGTTGAGGCTAGGAGATACTCTTTACGACGTTTCTTCTGGTTCAAACTGCAGTTTTCTTCAACATGTTGTGGCAATCAACCCTGAAAAGGGACAGTGCTGCGATCTTGGAGACATTGGCAAACGAGTCGTCGTAACACCGGATATTAGTTCCCTCTTGAATTCAGTGACTGAGTTGGGATGA

Protein sequence

MRNPDPSPPRRKVKFAPKSAPRKRPPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKNVKDGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDGSAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNSMGSSELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSLLNSVTELG

Homology

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BLAST of CaUC07G140480 vs. NCBI nr
Match: XP_038879339.1 (DNA-directed RNA polymerase III subunit rpc4-like [Benincasa hispida])

HSP 1 Score: 535.0 bits (1377), Expect = 5.1e-148
Identity = 289/382 (75.65%), Postives = 306/382 (80.10%), Query Frame = 0


Query: 1   MRNPDPSPPRRKVKFAPKSAPRKRPPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQ 60
           M+NPD SPPRRKVKFAPKSAPR+RPPPVQK EDEDGDGYVAQTRYLLRRA          
Sbjct: 1   MKNPDSSPPRRKVKFAPKSAPRRRPPPVQKIEDEDGDGYVAQTRYLLRRAT--------- 60

Query: 61  IPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKNVKDGLYKLEKRKSQAFTSVQVA 120
                        ENL  + N +                        +RKS    SVQVA
Sbjct: 61  -------------ENLGKRGNKV------------------------QRKS----SVQVA 120

Query: 121 FGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGED 180
           FGPGAA TSSSIRTYGVPKVENSSRKNDIEP+VDED+EFILPLPM+VEE+GKIFDK  +D
Sbjct: 121 FGPGAASTSSSIRTYGVPKVENSSRKNDIEPDVDEDEEFILPLPMDVEENGKIFDKKTKD 180

Query: 181 G------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREY 240
           G      SAIVTKTKKDYKEPWDYHNS YPTTLPIRMPYSGDPEQLDE EFGQDA DREY
Sbjct: 181 GIAESSSSAIVTKTKKDYKEPWDYHNSNYPTTLPIRMPYSGDPEQLDEAEFGQDATDREY 240

Query: 241 DENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNSMGSSEL 300
           DE+SVIPALDLGLLDE TENTKYFFQLPARLPLPKQSSTATGKEK GN RSS SMGSSEL
Sbjct: 241 DEDSVIPALDLGLLDEKTENTKYFFQLPARLPLPKQSSTATGKEKVGNLRSSKSMGSSEL 300

Query: 301 DDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGD 360
            DLKKLSAGCMGKLLIYKSGA+KLRLGDTLYDVSSGS+CSFLQHVVAIN ++GQCCDLGD
Sbjct: 301 GDLKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSDCSFLQHVVAINTKEGQCCDLGD 332

Query: 361 IGKRVVVTPDISSLLNSVTELG 377
           IGKRV+VTPDISSLLNS+T LG
Sbjct: 361 IGKRVIVTPDISSLLNSMTNLG 332

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BLAST of CaUC07G140480 vs. NCBI nr
Match: KAA0044650.1 (DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa])

HSP 1 Score: 515.0 bits (1325), Expect = 5.5e-142
Identity = 280/383 (73.11%), Postives = 300/383 (78.33%), Query Frame = 0


Query: 1   MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFL 60
           M+N D SPPRRKVKFAPKS+ R+R  PPPVQKTEDEDG+GYVAQTRYLLRRA        
Sbjct: 1   MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRAN------- 60

Query: 61  DQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKNVKDGLYKLEKRKSQAFTSVQ 120
                          ENL  + N +                        +RKS    SVQ
Sbjct: 61  ---------------ENLGKRANKV------------------------ERKS----SVQ 120

Query: 121 VAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIG 180
           VAFGPGA  TSSSIRTYGVPKVEN SRKNDIEPEVDED+EF+LP+ M+V EDGK FDK  
Sbjct: 121 VAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVAMDVNEDGKFFDKKT 180

Query: 181 EDG------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDR 240
           +DG      SA+VTKTK+DYKEPWDY NSYYPTTLP+RMPYSGDPE+LDE EFGQDAM+R
Sbjct: 181 KDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDAMNR 240

Query: 241 EYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNSMGSS 300
           EYDENSVIPALDLGL DENTENTKYFFQLPARLPLPKQSSTATGKEK GNSRSSNS  SS
Sbjct: 241 EYDENSVIPALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSS 300

Query: 301 ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDL 360
           +LDDLKKLSAGCMGKLLIYKSGA+KLRLGD LYDVSSGS+CSFLQHVVAIN EKGQCCDL
Sbjct: 301 DLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAINTEKGQCCDL 333

Query: 361 GDIGKRVVVTPDISSLLNSVTEL 376
           GDIGKRVVVTPDISSLLNSVT L
Sbjct: 361 GDIGKRVVVTPDISSLLNSVTNL 333

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BLAST of CaUC07G140480 vs. NCBI nr
Match: XP_004146914.1 (DNA-directed RNA polymerase III subunit rpc4 [Cucumis sativus] >KGN53151.1 hypothetical protein Csa_015254 [Cucumis sativus])

HSP 1 Score: 511.9 bits (1317), Expect = 4.6e-141
Identity = 278/383 (72.58%), Postives = 299/383 (78.07%), Query Frame = 0


Query: 1   MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFL 60
           M+N DPSPPRRKVKFAPKS+ RKR  PPPVQKTEDEDG+GYVAQTRYLLRRA        
Sbjct: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRAN------- 60

Query: 61  DQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKNVKDGLYKLEKRKSQAFTSVQ 120
                          ENL  + N                       K+EK+     +SVQ
Sbjct: 61  ---------------ENLGKRAN-----------------------KVEKK-----SSVQ 120

Query: 121 VAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIG 180
           VAFGPGA  TSSSIRTYGVPKVEN SRKNDIEPEVDED+EF+LP+  +V EDGK FDK  
Sbjct: 121 VAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVNEDGKYFDKKT 180

Query: 181 EDG------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDR 240
           +DG      SA+ TKTK+DYKEPWDY NSYYPTTLP+RMPYSGDPE+LDE EFGQD M+R
Sbjct: 181 KDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNR 240

Query: 241 EYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNSMGSS 300
           EYDENSVIPALDLGLLDENTE+TKYFFQLPARLPLPKQSSTATGKEK GNSRSSNS  SS
Sbjct: 241 EYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSS 300

Query: 301 ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDL 360
           +LDDLKKLSAGCMGKLLIYKSGA+KLRLGD LYDVSSGSNCSFLQHVVAIN E+GQCCDL
Sbjct: 301 DLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAINTEEGQCCDL 333

Query: 361 GDIGKRVVVTPDISSLLNSVTEL 376
           GDIG RVVVTPDISSLLNSVT L
Sbjct: 361 GDIGNRVVVTPDISSLLNSVTNL 333

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BLAST of CaUC07G140480 vs. NCBI nr
Match: XP_008453902.1 (PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo])

HSP 1 Score: 511.9 bits (1317), Expect = 4.6e-141
Identity = 279/383 (72.85%), Postives = 300/383 (78.33%), Query Frame = 0


Query: 1   MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFL 60
           M+N D SPPRRKVKFAPKS+ R+R  PPPVQKTEDEDG+GYVAQTRYLLRRA        
Sbjct: 1   MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRAN------- 60

Query: 61  DQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKNVKDGLYKLEKRKSQAFTSVQ 120
                          ENL  + N                       K+EK+     +SVQ
Sbjct: 61  ---------------ENLGKRAN-----------------------KVEKK-----SSVQ 120

Query: 121 VAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIG 180
           VAFGPGA  TSSSIRTYGVPKVEN SRKNDIEPEVDED+EF+LP+ M+V EDGK FDK  
Sbjct: 121 VAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVAMDVNEDGKFFDKKT 180

Query: 181 EDG------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDR 240
           +DG      SA+VTKTK+DYKEPWDY NSYYPTTLP+RMPYSGD E+LDE EFGQDAM+R
Sbjct: 181 KDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNR 240

Query: 241 EYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNSMGSS 300
           EYDENSVIPALDLGL DENTENTKYFFQLPARLPLPKQSSTATGKEK GNSRSSNS  SS
Sbjct: 241 EYDENSVIPALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSS 300

Query: 301 ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDL 360
           +LDDLKKLSAGCMGKLLIYKSGA+KLRLGD LYDVSSGS+CSFLQHVVAIN EKGQCCDL
Sbjct: 301 DLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAINTEKGQCCDL 333

Query: 361 GDIGKRVVVTPDISSLLNSVTEL 376
           GDIGKRVVVTPDISSLLNSVT L
Sbjct: 361 GDIGKRVVVTPDISSLLNSVTNL 333

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BLAST of CaUC07G140480 vs. NCBI nr
Match: TYK16939.1 (DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa])

HSP 1 Score: 487.6 bits (1254), Expect = 9.3e-134
Identity = 269/383 (70.23%), Postives = 291/383 (75.98%), Query Frame = 0


Query: 1   MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFL 60
           M+N D SPPRRKVKFAPKS+ R+R  PPPVQKTEDEDG+GYVAQTRYLLRRA        
Sbjct: 1   MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRAN------- 60

Query: 61  DQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKNVKDGLYKLEKRKSQAFTSVQ 120
                          ENL  + N                       K+EK+     +SVQ
Sbjct: 61  ---------------ENLGKRAN-----------------------KVEKK-----SSVQ 120

Query: 121 VAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIG 180
           VAFGPGA  TSSSIRTYGVPKVEN SRKNDIEPEVDED+EF+LP+ M+V EDGK FDK  
Sbjct: 121 VAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVAMDVNEDGKFFDKKT 180

Query: 181 EDG------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDR 240
           +DG      SA+VTKTK+DYKEPWDY NSYYPTTLP+RMPYSGD E+LDE EFGQDAM+R
Sbjct: 181 KDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNR 240

Query: 241 EYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNSMGSS 300
           EYDENSVIPALDLGL DENTENTKYFFQLPARLPLPKQSSTATGKEK GNSRSSNS  SS
Sbjct: 241 EYDENSVIPALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSS 300

Query: 301 ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDL 360
           +LDDLKKLSAGCMGKLLIYKSGA+KLRLGD LYDVSSGS+CSFLQHVVAIN EKGQCCDL
Sbjct: 301 DLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAINTEKGQCCDL 333

Query: 361 GDIGKRVVVTPDISSLLNSVTEL 376
           GDIGKRVV     S     V+EL
Sbjct: 361 GDIGKRVVEPISDSWAYKYVSEL 333

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BLAST of CaUC07G140480 vs. ExPASy Swiss-Prot
Match: Q91WD1 (DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 4.8e-08
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 297 LKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAI---NPEKGQCCDLG 356
           L  L+ G +GKLLI KSG V+L LG    DV+ G+ CSFLQ +V++   +   G+   LG
Sbjct: 318 LADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGEMTVLG 377

Query: 357 DIGKRVVVTPDISSLLN 371
            +  ++V +PD  SLL+
Sbjct: 378 HVKHKLVCSPDFESLLD 394

[Close]

BLAST of CaUC07G140480 vs. ExPASy Swiss-Prot
Match: P05423 (DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 8.2e-08
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 297 LKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAI---NPEKGQCCDLG 356
           L  L+ G +GKLLI KSG V+L LG    DV+ G+ CSFLQ +V++   +   G+   LG
Sbjct: 318 LADLTEGQVGKLLIRKSGRVQLLLGKVTLDVTMGTACSFLQELVSVGLGDSRTGEMTVLG 377

Query: 357 DIGKRVVVTPDISSLLN 371
            +  ++V +PD  SLL+
Sbjct: 378 HVKHKLVCSPDFESLLD 394

[Close]

BLAST of CaUC07G140480 vs. ExPASy Swiss-Prot
Match: Q5E9Z7 (DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-07
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 297 LKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAI---NPEKGQCCDLG 356
           L  L+ G +GKLLI KSG V+L LG    DV+ G+ CSFLQ +V++   +   G    LG
Sbjct: 318 LADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGDMTVLG 377

Query: 357 DIGKRVVVTPDISSLLN 371
            I  ++V +P+  SLL+
Sbjct: 378 HIKHKLVCSPNFESLLD 394

[Close]

BLAST of CaUC07G140480 vs. ExPASy Swiss-Prot
Match: P25441 (DNA-directed RNA polymerase III subunit RPC4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC53 PE=1 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 5.0e-05
Identity = 35/116 (30.17%), Postives = 59/116 (50.86%), Query Frame = 0


Query: 259 FQLPARLPLPKQSSTATGKEKAGNSRSSNSMGSSEL---DDLKKLS----AGCMGKLLIY 318
           FQLP RLP  ++ +    KE      S  S     +   D    LS    AG +G + ++
Sbjct: 307 FQLPTRLPAFERPAVKEEKEDMETQASDPSKKKKNIKKKDTKDALSTRELAGKVGSIRVH 366

Query: 319 KSGAVKLRLGDTLYDVSSGSNCSFLQHVVAIN--PEKGQCCDLGDIGKRVVVTPDI 366
           KSG + +++G+ + D+  G+  +FLQ V+A++   +      LG +  ++VVTP I
Sbjct: 367 KSGKLSVKIGNVVMDIGKGAETTFLQDVIALSIADDASSAELLGRVDGKIVVTPQI 422

[Close]

BLAST of CaUC07G140480 vs. ExPASy Swiss-Prot
Match: Q8T1V7 (DNA-directed RNA polymerase III subunit rpc4 OS=Dictyostelium discoideum OX=44689 GN=polr3d PE=3 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 1.9e-04
Identity = 27/77 (35.06%), Postives = 40/77 (51.95%), Query Frame = 0


Query: 297 LKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKG-----QCCD 356
           +K++ +G +G L IYKSG   L++G   YD+SSG    FL+ V     + G      C  
Sbjct: 351 IKEMPSGKLGTLKIYKSGKSILKIGTVEYDISSGDKLKFLEEVQCFQTKGGPDNSPTCYT 410

Query: 357 LGDIGKRVVVTPDISSL 369
           LG   + +V  P IS +
Sbjct: 411 LGIPSQHLVAAPIISQI 427

[Close]

BLAST of CaUC07G140480 vs. ExPASy TrEMBL
Match: A0A5A7TN83 (DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004050 PE=4 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 2.6e-142
Identity = 280/383 (73.11%), Postives = 300/383 (78.33%), Query Frame = 0


Query: 1   MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFL 60
           M+N D SPPRRKVKFAPKS+ R+R  PPPVQKTEDEDG+GYVAQTRYLLRRA        
Sbjct: 1   MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRAN------- 60

Query: 61  DQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKNVKDGLYKLEKRKSQAFTSVQ 120
                          ENL  + N +                        +RKS    SVQ
Sbjct: 61  ---------------ENLGKRANKV------------------------ERKS----SVQ 120

Query: 121 VAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIG 180
           VAFGPGA  TSSSIRTYGVPKVEN SRKNDIEPEVDED+EF+LP+ M+V EDGK FDK  
Sbjct: 121 VAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVAMDVNEDGKFFDKKT 180

Query: 181 EDG------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDR 240
           +DG      SA+VTKTK+DYKEPWDY NSYYPTTLP+RMPYSGDPE+LDE EFGQDAM+R
Sbjct: 181 KDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDAMNR 240

Query: 241 EYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNSMGSS 300
           EYDENSVIPALDLGL DENTENTKYFFQLPARLPLPKQSSTATGKEK GNSRSSNS  SS
Sbjct: 241 EYDENSVIPALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSS 300

Query: 301 ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDL 360
           +LDDLKKLSAGCMGKLLIYKSGA+KLRLGD LYDVSSGS+CSFLQHVVAIN EKGQCCDL
Sbjct: 301 DLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAINTEKGQCCDL 333

Query: 361 GDIGKRVVVTPDISSLLNSVTEL 376
           GDIGKRVVVTPDISSLLNSVT L
Sbjct: 361 GDIGKRVVVTPDISSLLNSVTNL 333

[Close]

BLAST of CaUC07G140480 vs. ExPASy TrEMBL
Match: A0A0A0KZ61 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022870 PE=4 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 2.2e-141
Identity = 278/383 (72.58%), Postives = 299/383 (78.07%), Query Frame = 0


Query: 1   MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFL 60
           M+N DPSPPRRKVKFAPKS+ RKR  PPPVQKTEDEDG+GYVAQTRYLLRRA        
Sbjct: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRAN------- 60

Query: 61  DQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKNVKDGLYKLEKRKSQAFTSVQ 120
                          ENL  + N                       K+EK+     +SVQ
Sbjct: 61  ---------------ENLGKRAN-----------------------KVEKK-----SSVQ 120

Query: 121 VAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIG 180
           VAFGPGA  TSSSIRTYGVPKVEN SRKNDIEPEVDED+EF+LP+  +V EDGK FDK  
Sbjct: 121 VAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVNEDGKYFDKKT 180

Query: 181 EDG------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDR 240
           +DG      SA+ TKTK+DYKEPWDY NSYYPTTLP+RMPYSGDPE+LDE EFGQD M+R
Sbjct: 181 KDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNR 240

Query: 241 EYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNSMGSS 300
           EYDENSVIPALDLGLLDENTE+TKYFFQLPARLPLPKQSSTATGKEK GNSRSSNS  SS
Sbjct: 241 EYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSS 300

Query: 301 ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDL 360
           +LDDLKKLSAGCMGKLLIYKSGA+KLRLGD LYDVSSGSNCSFLQHVVAIN E+GQCCDL
Sbjct: 301 DLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAINTEEGQCCDL 333

Query: 361 GDIGKRVVVTPDISSLLNSVTEL 376
           GDIG RVVVTPDISSLLNSVT L
Sbjct: 361 GDIGNRVVVTPDISSLLNSVTNL 333

[Close]

BLAST of CaUC07G140480 vs. ExPASy TrEMBL
Match: A0A1S3BYJ9 (DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo OX=3656 GN=LOC103494480 PE=4 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 2.2e-141
Identity = 279/383 (72.85%), Postives = 300/383 (78.33%), Query Frame = 0


Query: 1   MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFL 60
           M+N D SPPRRKVKFAPKS+ R+R  PPPVQKTEDEDG+GYVAQTRYLLRRA        
Sbjct: 1   MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRAN------- 60

Query: 61  DQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKNVKDGLYKLEKRKSQAFTSVQ 120
                          ENL  + N                       K+EK+     +SVQ
Sbjct: 61  ---------------ENLGKRAN-----------------------KVEKK-----SSVQ 120

Query: 121 VAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIG 180
           VAFGPGA  TSSSIRTYGVPKVEN SRKNDIEPEVDED+EF+LP+ M+V EDGK FDK  
Sbjct: 121 VAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVAMDVNEDGKFFDKKT 180

Query: 181 EDG------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDR 240
           +DG      SA+VTKTK+DYKEPWDY NSYYPTTLP+RMPYSGD E+LDE EFGQDAM+R
Sbjct: 181 KDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNR 240

Query: 241 EYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNSMGSS 300
           EYDENSVIPALDLGL DENTENTKYFFQLPARLPLPKQSSTATGKEK GNSRSSNS  SS
Sbjct: 241 EYDENSVIPALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSS 300

Query: 301 ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDL 360
           +LDDLKKLSAGCMGKLLIYKSGA+KLRLGD LYDVSSGS+CSFLQHVVAIN EKGQCCDL
Sbjct: 301 DLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAINTEKGQCCDL 333

Query: 361 GDIGKRVVVTPDISSLLNSVTEL 376
           GDIGKRVVVTPDISSLLNSVT L
Sbjct: 361 GDIGKRVVVTPDISSLLNSVTNL 333

[Close]

BLAST of CaUC07G140480 vs. ExPASy TrEMBL
Match: A0A5D3D2X2 (Ribosomal protein L15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00760 PE=3 SV=1)

HSP 1 Score: 487.6 bits (1254), Expect = 4.5e-134
Identity = 269/383 (70.23%), Postives = 291/383 (75.98%), Query Frame = 0


Query: 1   MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFL 60
           M+N D SPPRRKVKFAPKS+ R+R  PPPVQKTEDEDG+GYVAQTRYLLRRA        
Sbjct: 1   MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRAN------- 60

Query: 61  DQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKNVKDGLYKLEKRKSQAFTSVQ 120
                          ENL  + N                       K+EK+     +SVQ
Sbjct: 61  ---------------ENLGKRAN-----------------------KVEKK-----SSVQ 120

Query: 121 VAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIG 180
           VAFGPGA  TSSSIRTYGVPKVEN SRKNDIEPEVDED+EF+LP+ M+V EDGK FDK  
Sbjct: 121 VAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVAMDVNEDGKFFDKKT 180

Query: 181 EDG------SAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDR 240
           +DG      SA+VTKTK+DYKEPWDY NSYYPTTLP+RMPYSGD E+LDE EFGQDAM+R
Sbjct: 181 KDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNR 240

Query: 241 EYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNSMGSS 300
           EYDENSVIPALDLGL DENTENTKYFFQLPARLPLPKQSSTATGKEK GNSRSSNS  SS
Sbjct: 241 EYDENSVIPALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSS 300

Query: 301 ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDL 360
           +LDDLKKLSAGCMGKLLIYKSGA+KLRLGD LYDVSSGS+CSFLQHVVAIN EKGQCCDL
Sbjct: 301 DLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAINTEKGQCCDL 333

Query: 361 GDIGKRVVVTPDISSLLNSVTEL 376
           GDIGKRVV     S     V+EL
Sbjct: 361 GDIGKRVVEPISDSWAYKYVSEL 333

[Close]

BLAST of CaUC07G140480 vs. ExPASy TrEMBL
Match: A0A6J1J8D2 (DNA-directed RNA polymerase III subunit rpc4-like OS=Cucurbita maxima OX=3661 GN=LOC111483488 PE=4 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 6.5e-125
Identity = 254/378 (67.20%), Postives = 278/378 (73.54%), Query Frame = 0


Query: 1   MRNPDPSPPRRKVKFAPKSAPRKRPPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQ 60
           M+NPDPSPPRRK+KFAPKS PR+RPPP  KTEDED DG VAQTRYLLRRA          
Sbjct: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVDGNVAQTRYLLRRAT--------- 60

Query: 61  IPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKNVKDGLYKLEKRKSQAFTSVQVA 120
                        ENL  + N                       K+EK+     +SVQVA
Sbjct: 61  -------------ENLGKRGN-----------------------KVEKK-----SSVQVA 120

Query: 121 FGPGAAPT--SSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIG 180
           FGPGAA    SSSIRTYGVPK+ NSSRKNDIEPE  ED+E ILPLP++ EE GK  ++  
Sbjct: 121 FGPGAASASESSSIRTYGVPKIGNSSRKNDIEPESAEDEELILPLPLDFEEYGKNLNEKT 180

Query: 181 EDGSAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENS 240
           ED     TK  KDYKEPW+ HNSYYPTTLP+RMP+SGDPE LDE EFGQD MDREYDENS
Sbjct: 181 ED----ATKNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEMLDEAEFGQDVMDREYDENS 240

Query: 241 VIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNSMGSSELDDLK 300
            IPALDLGLLDEN+ENT+YFFQLPARLP PK+SST+TGKEK GN RSS S GSSEL DL+
Sbjct: 241 NIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLRSSISTGSSELGDLQ 300

Query: 301 KLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKR 360
            L  G MGKLLIYKSGAVKLRLGDTLYDVSSG +CSFLQHVVAIN +KGQC DLGDIGKR
Sbjct: 301 NLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCFDLGDIGKR 324

Query: 361 VVVTPDISSLLNSVTELG 377
           VVVTPDI SLLNS T+LG
Sbjct: 361 VVVTPDIGSLLNSTTDLG 324

[Close]

BLAST of CaUC07G140480 vs. TAIR 10
Match: AT4G25180.1 (RNA polymerase III RPC4 )

HSP 1 Score: 177.6 bits (449), Expect = 1.9e-44
Identity = 118/299 (39.46%), Postives = 171/299 (57.19%), Query Frame = 0


Query: 88  SENEATRSKKNVKDG-------LYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKV 147
           S  EA   ++N+K         + +  K +++A +S +VAF P  +P   +IR++GVPK 
Sbjct: 29  SNTEAEEDEENIKASRQFDRRIVGRRPKTETKA-SSPEVAFQPSLSPL--AIRSFGVPK- 88

Query: 148 ENSSRKNDIEPEVDEDDEFILPLPMNV---EEDGKIFDKIGEDGSAIVTKTKKDYKEPWD 207
           E+    +D+ P        ILP   +V   +ED       GE+    VT+T  DY EPWD
Sbjct: 89  EDDKPNSDVNP---SSPASILPAVSSVTAAQED-------GEEVHNFVTRTGDDYVEPWD 148

Query: 208 YHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLD-ENTENTK 267
           Y NSYYPT LP+R P SGD E LD+ EFG+ A +R+YDEN++  A +LGL   ++++   
Sbjct: 149 YRNSYYPTVLPLRKPNSGDIELLDQEEFGEVAKNRDYDENTINSAEELGLTSVQHSKKQM 208

Query: 268 YFFQLPARLPLPKQSSTATGKEKAGNSRSSNSMGSSELDDLKKLSAGCMGKLLIYKSGAV 327
           + F++P  LP+ KQ++ AT K      RS     S   +  + L  G MGK+L+YKSGAV
Sbjct: 209 FIFKIPDCLPVVKQTTGATTK------RSVREYSSGISNPFEGLPEGFMGKMLVYKSGAV 268

Query: 328 KLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSLLNSVTEL 376
           KL++GD L+DVS G        VVAI+ +   C  +G   K V VTPD+ SLLN  +++
Sbjct: 269 KLKVGDALFDVSPGPGTKIPNDVVAIDIKGRNCSRIGSSAKFVTVTPDVESLLNPASDM 307

[Close]

BLAST of CaUC07G140480 vs. TAIR 10
Match: AT5G09380.1 (RNA polymerase III RPC4 )

HSP 1 Score: 147.1 bits (370), Expect = 2.8e-35
Identity = 93/236 (39.41%), Postives = 134/236 (56.78%), Query Frame = 0


Query: 141 ENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDGSAIVTKTKK-DYKEPWDYH 200
           E S RK   + +V       L   +N     K  ++   +G+   T T++ +YKEPWDY+
Sbjct: 49  ERSLRKPKADKKVPASQVAWLGGVVNSTRSNKYLNR--SNGAYGSTSTQEIEYKEPWDYY 108

Query: 201 NSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFF 260
            SYYP TLP+R PY+GDPE LD  EF Q      + E+S+  A +LGL++++ E   +F 
Sbjct: 109 -SYYPITLPMRRPYAGDPEVLDVEEFMQAG---GHHEDSLNTAANLGLMEDSGEQKMFFM 168

Query: 261 QLPARLPLPKQSSTATGKEKAGNSRSSNSMGSSELDDLKKLSAGCMGKLLIYKSGAVKLR 320
           +LP+   +P  S+     E   N +        +  DLK L  G MGKLL+YKSGAVK++
Sbjct: 169 RLPS---VPLASTPTENLETRPNIKGP---VEKKTVDLKALPEGYMGKLLVYKSGAVKMK 228

Query: 321 LGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSLLNSVTEL 376
           LG+ LYDVS G    F Q V+ +N E+  CC +GD+ K  V+TPDI S+L  +  +
Sbjct: 229 LGEVLYDVSPGLKSEFAQDVMVVNTEQKNCCLVGDVYKHAVLTPDIDSILKDIENI 272

HSP 2 Score: 34.7 bits (78), Expect = 2.0e-01
Identity = 20/45 (44.44%), Postives = 27/45 (60.00%), Query Frame = 0


Query: 5  DPSPPRRKVKFAPKSAPRKRPPPVQKTEDEDGDGYVAQTRYLLRR 50
          +  PP RK+KFAPK+ P++ P P  K E  + +   AQ   LLRR
Sbjct: 2  EQKPPVRKMKFAPKAPPKRVPKPEVKPEVVEDNSNSAQASELLRR 46

The following BLAST results are available for this feature:

BLAST of CaUC07G140480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879339.1	5.1e-148	75.65	DNA-directed RNA polymerase III subunit rpc4-like [Benincasa hispida]	[more]
KAA0044650.1	5.5e-142	73.11	DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa]	[more]
XP_004146914.1	4.6e-141	72.58	DNA-directed RNA polymerase III subunit rpc4 [Cucumis sativus] >KGN53151.1 hypot...	[more]
XP_008453902.1	4.6e-141	72.85	PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo]	[more]
TYK16939.1	9.3e-134	70.23	DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa]	[more]

BLAST of CaUC07G140480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q91WD1	4.8e-08	42.86	DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d ...	[more]
P05423	8.2e-08	42.86	DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D P...	[more]
Q5E9Z7	2.4e-07	42.86	DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=...	[more]
P25441	5.0e-05	30.17	DNA-directed RNA polymerase III subunit RPC4 OS=Saccharomyces cerevisiae (strain...	[more]
Q8T1V7	1.9e-04	35.06	DNA-directed RNA polymerase III subunit rpc4 OS=Dictyostelium discoideum OX=4468...	[more]

BLAST of CaUC07G140480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TN83	2.6e-142	73.11	DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo var. makuwa OX...	[more]
A0A0A0KZ61	2.2e-141	72.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022870 PE=4 SV=1	[more]
A0A1S3BYJ9	2.2e-141	72.85	DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5D3D2X2	4.5e-134	70.23	Ribosomal protein L15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13...	[more]
A0A6J1J8D2	6.5e-125	67.20	DNA-directed RNA polymerase III subunit rpc4-like OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of CaUC07G140480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25180.1	1.9e-44	39.46	RNA polymerase III RPC4	[more]
AT5G09380.1	2.8e-35	39.41	RNA polymerase III RPC4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PFAM	PF05132	RNA_pol_Rpc4	coord: 258..365 e-value: 8.0E-26 score: 91.2
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PANTHER	PTHR13408	DNA-DIRECTED RNA POLYMERASE III	coord: 1..51
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PANTHER	PTHR13408	DNA-DIRECTED RNA POLYMERASE III	coord: 107..375
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 269..292
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR13408:SF6	DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC4-LIKE ISOFORM X1	coord: 1..51
None	No IPR available	PANTHER	PTHR13408:SF6	DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC4-LIKE ISOFORM X1	coord: 107..375

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC07G140480.1	CaUC07G140480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding