CaUC07G140330 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC07G140330
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	pirin-like protein
Location	Ciama_Chr07: 31230223 .. 31231097 (+)
RNA-Seq Expression	CaUC07G140330
Synteny	CaUC07G140330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGTTCAAAACCAAATAAAGAAAAAGAAAAAGAAAAAAAAAGAAAGAAAAAANAAAAAAAAAAAAAAGGAGCCCACCTCTTAATTTTCCCACGATTTGAATCCCCATGCGTCGCCAAACCAAAATCCCCAAATCCAATTCATATATAAATCCCCAAATCCCCTCTTCCCAATTCCAATTCAGTTCATGAAATTTTCAGTTTCTCCCATTTTCAAATCCCCCGCCATTATTTCCCCCAGATTCTTCTTCTCCACCGCCATGTCCACTTCCGATCACTCTCCCCCTGCCTTCGACCGACCTCGCTCCGTCATCAAGAAGATTCTTGCTAAACTCCAGCACGAAGGCGACGGCGCCGTCGTTCGTCGAGGCATCGGAAGGTCTCTTTCTTCTTCTTTGTTTTCTCTGTTCTTTTTCTCCGCCGCTGATTTTATAAATCTGATCTCTGATTCAGGAATGATTTGAAGAATCTAGATCCATTTCTTATGCTCGATGATTTCTCTGGTAATCTCGATCGGAATCTGATTGTTGTTGTTTCTTACTTATGATTTCGTTTCTCTGTTTCTTCTTATTTAATTTTGTTTTTCAATTGTTTCATTCATTGCAGTCAGTCCGCCGGCTGGATTCCCCGATCATCCTCACAGAGGTTCCTTCCTTTCCGTTGAATTTTCGCTGTTCAATAACAGAACTGCTCTGCGAATTCAACTATTATTATTGTTATTTTTTTATTCGTCTTCTAACTACTAATTTCTTGGATATTTAATTATTCATAATATTTGGTCCTGTTTAATTAAATCAATACGTTAATACAGGTCAGAAGAAGCATCATTTTTTAAAATTATTCACATAAATAATTGAATAGGATATGTCGCAT

mRNA sequence

ATGATTGTTTCTCCCATTTTCAAATCCCCCGCCATTATTTCCCCCAGATTCTTCTTCTCCACCGCCATGTCCACTTCCGATCACTCTCCCCCTGCCTTCGACCGACCTCGCTCCGTCATCAAGAAGATTCTTGCTAAACTCCAGCACGAAGGCGACGGCGCCGTCGTTCGTCGAGGCATCGGAAGGAATGATTTGAAGAATCTAGATCCATTTCTTATGCTCGATGATTTCTCTGGTAATCTCGATCGGAATCTGATTGTTGTTTCAGTCCGCCGGCTGGATTCCCCGATCATCCTCACAGAGGTTCCTTCCTTTCCGTTGAATTTTCGCTGTTCAATAACAGAACTGCTCTGCGAATTCAACTATTATTATTGTTATTTTTTTATTCGTCTTCTAACTACTAATTTCTTGGATATTTAATTATTCATAATATTTGGTCCTGTTTAATTAAATCAATACGTTAATACAGGTCAGAAGAAGCATCATTTTTTAAAATTATTCACATAAATAATTGAATAGGATATGTCGCAT

Coding sequence (CDS)

ATGATTGTTTCTCCCATTTTCAAATCCCCCGCCATTATTTCCCCCAGATTCTTCTTCTCCACCGCCATGTCCACTTCCGATCACTCTCCCCCTGCCTTCGACCGACCTCGCTCCGTCATCAAGAAGATTCTTGCTAAACTCCAGCACGAAGGCGACGGCGCCGTCGTTCGTCGAGGCATCGGAAGGAATGATTTGAAGAATCTAGATCCATTTCTTATGCTCGATGATTTCTCTGGTAATCTCGATCGGAATCTGATTGTTGTTTCAGTCCGCCGGCTGGATTCCCCGATCATCCTCACAGAGGTTCCTTCCTTTCCGTTGAATTTTCGCTGTTCAATAACAGAACTGCTCTGCGAATTCAACTATTATTATTGTTATTTTTTTATTCGTCTTCTAACTACTAATTTCTTGGATATTTAA

Protein sequence

MIVSPIFKSPAIISPRFFFSTAMSTSDHSPPAFDRPRSVIKKILAKLQHEGDGAVVRRGIGRNDLKNLDPFLMLDDFSGNLDRNLIVVSVRRLDSPIILTEVPSFPLNFRCSITELLCEFNYYYCYFFIRLLTTNFLDI

Homology

[Close]

BLAST of CaUC07G140330 vs. NCBI nr
Match: XP_038879766.1 (pirin-like protein [Benincasa hispida])

HSP 1 Score: 142.5 bits (358), Expect = 2.7e-30
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 3   VSPIFKSPAIISPRFFF-----STAMSTSDHSPPAFDRPRSVIKKILAKLQHEGDGAVVR 62
           +SPIF+SPAIISP FFF     S+AMSTSDHSPPAFDRPRSVIKKILAKLQHEGDGAVVR
Sbjct: 20  LSPIFRSPAIISPTFFFFSSAVSSAMSTSDHSPPAFDRPRSVIKKILAKLQHEGDGAVVR 79

Query: 63  RGIGRNDLKNLDPFLMLDDFS 79
           RGIGRNDLKNLDPFLMLDDFS
Sbjct: 80  RGIGRNDLKNLDPFLMLDDFS 100

[Close]

BLAST of CaUC07G140330 vs. NCBI nr
Match: XP_008453920.1 (PREDICTED: pirin-like protein [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-27
Identity = 69/79 (87.34%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 4   SPIFKSPAI-ISPRFFF---STAMSTSDHSPPAFDRPRSVIKKILAKLQHEGDGAVVRRG 63
           SP FKSPAI +SP+F F   S AMS+SDHSPPAFDRPRSVIKKILAKLQHEGDGAVVRRG
Sbjct: 34  SPFFKSPAITVSPKFSFSIASAAMSSSDHSPPAFDRPRSVIKKILAKLQHEGDGAVVRRG 93

Query: 64  IGRNDLKNLDPFLMLDDFS 79
           IGRNDLKNLDPFLMLDDFS
Sbjct: 94  IGRNDLKNLDPFLMLDDFS 112

[Close]

BLAST of CaUC07G140330 vs. NCBI nr
Match: XP_004152078.2 (pirin-like protein [Cucumis sativus] >KGN53133.2 hypothetical protein Csa_015206 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-27
Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 3  VSPIFKSPAI-ISPRFFFS------TAMSTSDHSPPAFDRPRSVIKKILAKLQHEGDGAV 62
          +SPIFKSPAI I P+F FS       AMS+SDHSPPAFDRPRSVIKKILAKLQHEGDGAV
Sbjct: 5  LSPIFKSPAITIPPKFSFSFSFSVAAAMSSSDHSPPAFDRPRSVIKKILAKLQHEGDGAV 64

Query: 63 VRRGIGRNDLKNLDPFLMLDDFS 79
          VRRGIGRNDLKNLDPFLMLDDFS
Sbjct: 65 VRRGIGRNDLKNLDPFLMLDDFS 87

[Close]

BLAST of CaUC07G140330 vs. NCBI nr
Match: XP_022932582.1 (pirin-like protein [Cucurbita moschata] >KAG6597627.1 hypothetical protein SDJN03_10807, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-25
Identity = 66/82 (80.49%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 3  VSPIFKSPAIISPRF------FFSTAMSTSDHSPPAFDRPRSVIKKILAKLQHEGDGAVV 62
          VS IFK PAI+SPRF        S  MSTSDHS PAFDRPRSVIKK+LAKLQHEGDGAVV
Sbjct: 5  VSLIFKLPAILSPRFSIIPTTAISATMSTSDHSSPAFDRPRSVIKKVLAKLQHEGDGAVV 64

Query: 63 RRGIGRNDLKNLDPFLMLDDFS 79
          RRGIGR+DLKNLDPFLMLDDFS
Sbjct: 65 RRGIGRSDLKNLDPFLMLDDFS 86

[Close]

BLAST of CaUC07G140330 vs. NCBI nr
Match: XP_023540122.1 (pirin-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.9 bits (315), Expect = 2.6e-25
Identity = 65/82 (79.27%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 3  VSPIFKSPAIISPRF------FFSTAMSTSDHSPPAFDRPRSVIKKILAKLQHEGDGAVV 62
          +S IFK PAI+SPRF        S  MSTSDHS PAFDRPRSVIKK+LAKLQHEGDGAVV
Sbjct: 5  LSLIFKLPAILSPRFSIIPTTAISATMSTSDHSSPAFDRPRSVIKKVLAKLQHEGDGAVV 64

Query: 63 RRGIGRNDLKNLDPFLMLDDFS 79
          RRGIGR+DLKNLDPFLMLDDFS
Sbjct: 65 RRGIGRSDLKNLDPFLMLDDFS 86

[Close]

BLAST of CaUC07G140330 vs. ExPASy Swiss-Prot
Match: Q9SEE4 (Pirin-like protein OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.4e-13
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 33 FDRPRSVIKKILAKLQHEGDGAVVRRGIGRNDLKNLDPFLMLDDFS 79
          F RPR V+KK+LA+ Q+EGDGA+VRR IGR +L+NLDPFLMLD+FS
Sbjct: 7  FSRPRLVVKKVLARAQNEGDGAIVRRSIGRPELQNLDPFLMLDEFS 52

[Close]

BLAST of CaUC07G140330 vs. ExPASy Swiss-Prot
Match: Q9ZW82 (Pirin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=PRN2 PE=1 SV=3)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 12 IISPRFFFSTAMSTSDHSPPAFDRPRSVIKKILAKLQHEGDGAVVRRGIGRNDLKNLDPF 71
          + S RF  +    +S  S     RP  VIKK+ AKLQ EGDGAVVRRGI R++ K LDPF
Sbjct: 14 LFSFRFIRNIKSMSSSTSQDFVSRP--VIKKVFAKLQKEGDGAVVRRGISRSEQKLLDPF 73

Query: 72 LMLDDFS 79
          LMLD+FS
Sbjct: 74 LMLDEFS 78

[Close]

BLAST of CaUC07G140330 vs. ExPASy Swiss-Prot
Match: Q9LX49 (Pirin-1 OS=Arabidopsis thaliana OX=3702 GN=PRN1 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-08
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 36 PRSVIKKILAKLQHEGDGAVVRRGIGRNDLKNLDPFLMLDDFSGNL 82
          PR VIKK+LAKL+ EG+GAVVR GI + D K LDPF++L +FS +L
Sbjct: 9  PRIVIKKVLAKLEKEGEGAVVRNGITKIDQKLLDPFVLLVEFSFSL 54

[Close]

BLAST of CaUC07G140330 vs. ExPASy Swiss-Prot
Match: Q9LPS9 (Pirin-like protein At1g50590 OS=Arabidopsis thaliana OX=3702 GN=At1g50590 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.7e-07
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 37 RSVIKKILAKLQHEGDGAVVRRGIGRNDLKNLDPFLMLDDFS 79
          R V+KK+ A+  HEG GAVVRR IGR + +  DPFL+LD+FS
Sbjct: 13 RLVVKKLFARQLHEGFGAVVRRSIGRFEFRYFDPFLVLDEFS 54

[Close]

BLAST of CaUC07G140330 vs. ExPASy Swiss-Prot
Match: O00625 (Pirin OS=Homo sapiens OX=9606 GN=PIR PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.8e-06
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 37 RSVIKKILAKLQHEGDGAVVRRGIGRNDLKNLDPFLMLDDFSG 80
          + V   +L++ Q EG GA VRR IGR +LKNLDPFL+ D+F G
Sbjct: 5  KKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKG 47

[Close]

BLAST of CaUC07G140330 vs. ExPASy TrEMBL
Match: A0A1S3BXE1 (pirin-like protein OS=Cucumis melo OX=3656 GN=LOC103494500 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 6.1e-28
Identity = 69/79 (87.34%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 4   SPIFKSPAI-ISPRFFF---STAMSTSDHSPPAFDRPRSVIKKILAKLQHEGDGAVVRRG 63
           SP FKSPAI +SP+F F   S AMS+SDHSPPAFDRPRSVIKKILAKLQHEGDGAVVRRG
Sbjct: 34  SPFFKSPAITVSPKFSFSIASAAMSSSDHSPPAFDRPRSVIKKILAKLQHEGDGAVVRRG 93

Query: 64  IGRNDLKNLDPFLMLDDFS 79
           IGRNDLKNLDPFLMLDDFS
Sbjct: 94  IGRNDLKNLDPFLMLDDFS 112

[Close]

BLAST of CaUC07G140330 vs. ExPASy TrEMBL
Match: A0A6J1EX63 (pirin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111439095 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.7e-26
Identity = 66/82 (80.49%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 3  VSPIFKSPAIISPRF------FFSTAMSTSDHSPPAFDRPRSVIKKILAKLQHEGDGAVV 62
          VS IFK PAI+SPRF        S  MSTSDHS PAFDRPRSVIKK+LAKLQHEGDGAVV
Sbjct: 5  VSLIFKLPAILSPRFSIIPTTAISATMSTSDHSSPAFDRPRSVIKKVLAKLQHEGDGAVV 64

Query: 63 RRGIGRNDLKNLDPFLMLDDFS 79
          RRGIGR+DLKNLDPFLMLDDFS
Sbjct: 65 RRGIGRSDLKNLDPFLMLDDFS 86

[Close]

BLAST of CaUC07G140330 vs. ExPASy TrEMBL
Match: A0A6J1I7X3 (pirin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111470813 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 62/79 (78.48%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 6  IFKSPAIISPRF------FFSTAMSTSDHSPPAFDRPRSVIKKILAKLQHEGDGAVVRRG 65
          IFK PAI+ PRF        S  MSTSDHS PAFDRPRSV+KK+LAKLQHEGDGAVVRRG
Sbjct: 8  IFKLPAILFPRFSIIPTTAISATMSTSDHSSPAFDRPRSVVKKVLAKLQHEGDGAVVRRG 67

Query: 66 IGRNDLKNLDPFLMLDDFS 79
          IGR+DLKNLDPFLMLDDFS
Sbjct: 68 IGRSDLKNLDPFLMLDDFS 86

[Close]

BLAST of CaUC07G140330 vs. ExPASy TrEMBL
Match: A0A6J1IS18 (pirin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111479446 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-20
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 23 MSTSDHSPPAFDRPRSVIKKILAKLQHEGDGAVVRRGIGRNDLKNLDPFLMLDDFS 79
          MS+S HSP AFDRPRSVIKKILAKLQ+EGDGAVVRRGIGRNDLKNLDPFLMLDDFS
Sbjct: 1  MSSSSHSPSAFDRPRSVIKKILAKLQNEGDGAVVRRGIGRNDLKNLDPFLMLDDFS 56

[Close]

BLAST of CaUC07G140330 vs. ExPASy TrEMBL
Match: A0A6J1GWD7 (pirin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111457750 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-20
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 23 MSTSDHSPPAFDRPRSVIKKILAKLQHEGDGAVVRRGIGRNDLKNLDPFLMLDDFS 79
          MS+S HSP AFDRPRSVIKKILAKLQ+EGDGAVVRRGIGRNDLKNLDPFLMLDDFS
Sbjct: 1  MSSSSHSPSAFDRPRSVIKKILAKLQNEGDGAVVRRGIGRNDLKNLDPFLMLDDFS 56

[Close]

BLAST of CaUC07G140330 vs. TAIR 10
Match: AT2G43120.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 7.9e-12
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 12 IISPRFFFSTAMSTSDHSPPAFDRPRSVIKKILAKLQHEGDGAVVRRGIGRNDLKNLDPF 71
          + S RF  +    +S  S     RP  VIKK+ AKLQ EGDGAVVRRGI R++ K LDPF
Sbjct: 14 LFSFRFIRNIKSMSSSTSQDFVSRP--VIKKVFAKLQKEGDGAVVRRGISRSEQKLLDPF 73

Query: 72 LMLDDFS 79
          LMLD+FS
Sbjct: 74 LMLDEFS 78

[Close]

BLAST of CaUC07G140330 vs. TAIR 10
Match: AT3G59220.1 (pirin )

HSP 1 Score: 59.3 bits (142), Expect = 2.8e-09
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 36 PRSVIKKILAKLQHEGDGAVVRRGIGRNDLKNLDPFLMLDDFSGNL 82
          PR VIKK+LAKL+ EG+GAVVR GI + D K LDPF++L +FS +L
Sbjct: 9  PRIVIKKVLAKLEKEGEGAVVRNGITKIDQKLLDPFVLLVEFSFSL 54

[Close]

BLAST of CaUC07G140330 vs. TAIR 10
Match: AT1G50590.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 4.1e-08
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 37 RSVIKKILAKLQHEGDGAVVRRGIGRNDLKNLDPFLMLDDFS 79
          R V+KK+ A+  HEG GAVVRR IGR + +  DPFL+LD+FS
Sbjct: 13 RLVVKKLFARQLHEGFGAVVRRSIGRFEFRYFDPFLVLDEFS 54

The following BLAST results are available for this feature:

BLAST of CaUC07G140330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879766.1	2.7e-30	88.89	pirin-like protein [Benincasa hispida]	[more]
XP_008453920.1	1.3e-27	87.34	PREDICTED: pirin-like protein [Cucumis melo]	[more]
XP_004152078.2	2.2e-27	84.34	pirin-like protein [Cucumis sativus] >KGN53133.2 hypothetical protein Csa_015206...	[more]
XP_022932582.1	1.2e-25	80.49	pirin-like protein [Cucurbita moschata] >KAG6597627.1 hypothetical protein SDJN0...	[more]
XP_023540122.1	2.6e-25	79.27	pirin-like protein [Cucurbita pepo subsp. pepo]	[more]

BLAST of CaUC07G140330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEE4	5.4e-13	71.74	Pirin-like protein OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]
Q9ZW82	1.1e-10	56.72	Pirin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=PRN2 PE=1 SV=3	[more]
Q9LX49	4.0e-08	63.04	Pirin-1 OS=Arabidopsis thaliana OX=3702 GN=PRN1 PE=1 SV=1	[more]
Q9LPS9	5.7e-07	59.52	Pirin-like protein At1g50590 OS=Arabidopsis thaliana OX=3702 GN=At1g50590 PE=2 S...	[more]
O00625	2.8e-06	55.81	Pirin OS=Homo sapiens OX=9606 GN=PIR PE=1 SV=1	[more]

BLAST of CaUC07G140330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BXE1	6.1e-28	87.34	pirin-like protein OS=Cucumis melo OX=3656 GN=LOC103494500 PE=3 SV=1	[more]
A0A6J1EX63	5.7e-26	80.49	pirin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111439095 PE=3 SV=1	[more]
A0A6J1I7X3	1.4e-24	78.48	pirin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111470813 PE=3 SV=1	[more]
A0A6J1IS18	3.6e-20	92.86	pirin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111479446 PE=3 SV=1	[more]
A0A6J1GWD7	3.6e-20	92.86	pirin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111457750 PE=3 SV=1	[more]

BLAST of CaUC07G140330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43120.1	7.9e-12	56.72	RmlC-like cupins superfamily protein	[more]
AT3G59220.1	2.8e-09	63.04	pirin	[more]
AT1G50590.1	4.1e-08	59.52	RmlC-like cupins superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10	Jelly Rolls	coord: 50..80 e-value: 2.9E-5 score: 25.9
IPR012093	Pirin	PANTHER	PTHR13903	PIRIN-RELATED	coord: 26..78
None	No IPR available	PANTHER	PTHR13903:SF21	PIRIN-LIKE PROTEIN	coord: 26..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC07G140330.1	CaUC07G140330.1	mRNA