CaUC07G139710 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC07G139710
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionbiogenesis of lysosome-related organelles complex 1 subunit 2
LocationCiama_Chr07: 30507097 .. 30515342 (-)
RNA-Seq ExpressionCaUC07G139710
SyntenyCaUC07G139710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTAGAATATTTTCTTTTTTCTAAATGGTTTCTTTTCAAACATACCACTAAGGGGAGTTCTTTGACCCACGATACATGAAAATCGTCCTTCCAGACTAAATCGACCTAAAATCAAACCACTCAAAAAGTGGGGGTTTTAAACTTGGAAGCAACAGAAATCTATCGTGTCTTCATGAGGGGAGTAAAATGTGTTGGAGTCTTTTTTCCCATGGTTTTATCCTATTAAGTTATTAAAGTATGTGAATAATGTATTCATTTATATGAATAATGTATTTTTTTTTCTAGTATAATTTTTTTCTCAATTGATATAGTGGTTGTATTATCTATACGTCACTGCAAAATGGGTCGTCTTCTTCCCTTCTCTCGCTGAGGAATGGATCGGGGGAGGGTCGTTAATTTCGGCTTGATGTGCTAAGTGTCACAATCGCTTACTTTCAGATACGGGACAGGCGATTGTGCGGCACTGCTCTAACCCGGCGAGCAAGTCAGCCGTACAAAAACCGTGGGTCGCGGGCAAACTCGGGGTATGATGTAGCCTCTACTCACGTTTCGAGAGAAAATGGTTTTATAAAACGAGAGAGAGGGAAAGCTTTGAAAACATCATACAATAAAGCATTGAGGACTGGCAATTGCAAGAAAGCTTGTTTGCAAAGAGTACAACAATACTTGGTCGGGGAGTCAACTAGTGGGGGTCCCCTATAGTACATTCTAAGCAAAAACTAGTCTGCCAGCCTTGCATATGAAAACTGGCGAAACGTCACTCAAAAGGAAAACAACATGAAAATGAAAACAACTTCCTAAGCTACTTACAAGACATGAATATAAGGTGGTTGAGGGTGGTTTGGGCATGCGGCCATAGGCAAACACTCCCTGGACAAGCATGCTCAAGACACTCTCCCCCACTTAAACAGTTGACGTCTCTGTCGACTGGCGAAGCTTGAACTCTTCGATCTTCGGCTTCCATGCTTCTAAATCTTCAAGACGTTCCCAACTTGTTTCTTCTGCGGGGAGGTTTCTCCACTTGACGAGAAATTCGAGAACTCTCCGAACAGGTCTTCCAACTTTTCTGACTCTGTCTGCAAGGATCTCTTCAACTTCCTTCTCACATGTGTGCTTGAGGTTGATATCTGGGCGAACAGTGGCATTGCGGCTATCATCATTGGGGTCGAGGTGATAGGGTTTGAGATTGCTCACATGAATTACTGGGTAAATTTTCATCCATGTGGGCAACGCCACCCTATACGAAGCATTCCCGACCTTCTTCAGGACTTCTACTGGACCCTCATACTTCCTGACAAGGCGTTGGTCCTTCCGGCTTCGGAATCGAATCTGTTCAGGTCTCAACTTGATCAGAACTTGATCCCCTACTCGAAATTCGAGGGGGCGCCGCTTCTTGTCCGCCCACTTCTTCATGTGCTTGGAGGCTTTCTCCAAGTAAGCTCGTGCAATCTCAACGGTCTGTCTCCACTCCTTTGTAAAGTTGTGAGCTTGGGGGTTCTTTCCTGCGTATGGGTGATCAATAATGTGGGGCAACAAGGGTTGTCTTCCGCTTACAACTTCAAAGGGACTCTTCCCTGTTGATGAGCTTGTTTGGCAATTGAAGCAGAACTGGGCCACATCTAACAACTGCACCCAATTCTTTTGCCGGGCGTCGACAAAGTGACGCAAATACTCTTCGAGCAGACAGTTAAACCTTTCTGTCTGGCCATCTGTTTGGGGGTGGTAACTTGAGGATATATTCAGGCTTGTCCCTAAGAAGGCAAATAGTTCAGTCCAGAAGGTGCCTATGAATCTGCCATCTCTGTCGCTGACAATACTGGCTGGAATTCCCCATAGTTTCACCACATGTTTGAAGAACAATTGAGCTGTCATCTCGGCAGAACATAGTTTCGGGGTAGCTATGAAGGTGGCATACTTCGAAAACCGATCGATGATAACTAAGATGGCTTCGTGCTCGCCTACCTTCGGCAGATGGGTGATGAAATCCATGGACACGCTCTCCCATGGTCTCGACGGCACTGGCAAGGGTTCGAGGAGCCCAGCAATTTTCGCTCGCTCAACCTTGTCCTGTTGACAGATGAGGCAGGTCTTGGTGTACTGTATGACATCGTCTCGCATACTGGGCCAGAAGTAACCCTTCTTCAGTAGTGCATAGGTTCTTTGCCACCCCGGATGGCCTGCCCATAAGGTATCGTGACATTCGTGTAACAACTTCTTCCTTAGGTCTCCTGCTCTGGGGACATACAACCGATTCCCTTTTGTCAACAGTAAGTCCCCCTCAACCCAGAACTGTCTGGTCTTGCCAGCTTTGGCTAATGCTATGACAGCCCGAGCGGAAGGGTCTTTTTGCAAAAATTCCTTGATGATCTCCCGCATCGATCCATCAGCCTTGCTCGACTGAATGTGGCCCAACGCGCACGTGGCCGCATGTTCACCCTTTCGGCTAAGGGCGTCGGCGGCCCGGTTGCTCCTCCCTGCCTTATGTTCAAAACAAAAGTCAAATTCAGCCAGAAATTCTTGCCATCGCGCCTGTTTTGACGTCAACTTTGGTTGGCTAAAGAAGTGGCAGATTGCAGTATTGTCGGTCTTAACTACGAAGCGCGATCCTAGCAAGTATTGCCTCCAAACTCTTAGGCAGTGGACAACAGCTAGCATTTCTTTCTCAGAGACAGTATATCTTCTTTCTGCGCTGTTGAGCTTTCGGCTTTCGTAAGCTATCGGATGACCTTCTTGGAGAAGAACGCCTCCGAGGGCATAATCTGAAGCATCTGTCTCCACCTCAAACGATTTTGTGATGTCTACAAGACCGAGAACAGGCTCCCGCATCATAGTCGCTTTAAGCTCTTCGAAGGCTGACTGGCATTCGACCGACCACTGCCAAGGAGTGTCTTTCTTCAACAACTCGGTTAGGGGGGCAGCTCTCCTTGAAAATCCTTCGATGAAACGACGATAGTAATTTGCTAGTCCCAAGAAAGAACGTAACTCGGACACAGAGACAGGAACTTTCCACTCCTGGATGGCTTTCAACTTGTCAGTATCCATCCCGATCTTCCCATGTCCGATCACGTGGCCCAAGAAGTTAATACTCCTTTGGGCAAAGGCACATTTTTCTTTCTTCACATAGAGCTGATTCTGCCGTAATTTATCAAAGACTAACCGGAGGTGAACTTTGTGCTCTTCTAGAGTGGGACTATATACCACAATGTCATCGAGGTAGACCACTACAAACTGATCAAGATACTCGTGAAACACTTGGTTCATCAGTGTACAAAACGTGGCTGGCGCGTTGGTGAGTCCGAAGGGCATCACGAGGAATTCAAAGGCCCCGTATCTAGTCACACAGGTGGTCTTCGGTTCGTCCCCCTGAGCGATGCGAATTTGGTAGTACCCTGACCTGAGATCAAGTTTTGTGAAGTATCGAGCTCCGTTCAACTGGTCAAACAAATCAGTGATGATCGGTAAGGGGTACTTGTTTCGAACTGTTACTTTGTTTAGAGCCCTATAATCGATACACAGTCGTAGCGTTCCGTCTTTCTTCTTCTGGAACAAAACTGGGGCCCCATACGGCGCTTTTGCAGGGCGAATGAATCCTGCACTTAGCAGCTCATCCAACTGCTTCCTGAGTTCAGCTAATTCAGGGGGAGCCATCCTGTATGCGTTCTTCGCTGGAGGTTTGGCTCCAGGGACAAGTTCAATCTCGTGATCAATCCCACGTCGCGGGGGTAAGGACTTTGGTAGACTTTGTGGCATAACATCAACATATTCGCTTAGAATTTCTTGGATCTCTAAAGGAACGAACTCGGTTTCGACGGGCTCGTTGACAACCGGGATAGCCATGAAGGTGGGTTCCTCCCGACTGAGACCTTTCTTTAACTGCAGGGCAGAAATCATTCTTACTCCACTAGGCTGCTTTATATCTGCCGGGACCACTGTGGGATTATTGCTGGTGACAATTAGGCATTTAGCCAGGGGCATGGGGATGACTTTGTGTTCCAAGAGAAACTCCATTCCGAGCACAACGTCAAAGTCGTCCATGCGGACTACGACTAAGTCGACGCTCCCGGTCCATTCGGCCAACTGCAAAGGTACCCTCTTGGACACTCCGACAATTGGCAGGGCTTCTGAATTCACTGCCTTCATCTTACCCGCGTCTTTCTCAACTTTGAGTTCTAGGCGGCGGGCTTCCTGTTCAGAAATGAAGTTGTGTGTTGCGCCAGAGTCTACCATGGTGCCTCTAGCAGGCTTGGAGTTGATGATCGCGTCAACAAACATAAGTCCCTTTTCTACCGCATCTTTCTGACGGGAAGTTTTCTTCTGAATTGCGGATAGGAATTTTAGTGCCCCCATTCTAGGGGTTTCCTCATCCTCTTCCCTTTCTGCCTCTACTTCCGTCTCAGGTTCGTTACAACTTTGAACTGAGGCCTGTAAGGCTGTCAAGGCACCCCGATGTGGACATTCGGCTACTCGGTGGGGGCCTTTGCATAAGAAACAAGAGATGGGCCTGGGTTGGTTTTGGTTGCCCTGATAGGGCCCCCGGGAGGGGCCTGCGCCTGAGGCTTGCGGCTTCCTTTCCGAATTGAAGCTCTTCGGGGGGTTGGATTTTGTGGCCTTGTACCCCGTACTCGGGGGCGCCGTGTTCTTCTTTTGTGGCGCCTGATCGCCACTGTAGTCTAACAGTCTTTCTGCGGCGGCCAGGGCGGAGGCTAGGTCCTGTACCTTTTGTTCGTAAAGTTTGGTCCTGGCCCATGGCTTTAGGCCCTCGACGAAACAAAACACCTTATCCTTCTCGGACATATCTCGGATATCTAGCATAACGGCGGAGAACTGTTTCACGTACTCACGGATGGTCCCCGTGTGCTTGAGCTCCCTTAGCTTCCTCCTCGCTATGAACTCTACATTTTCGGGGAAGAACTGAGCCCTCAACTCCTTCTTAAAATCTCCCCACGTATCGATGGTGCATCGACCATCTTGGACATCGTTAACTTTGGATCTCCACCACAGTTTTGCATCATCGGAGAGATGCATAGAGGCCAACGTGACCTTGACCTCCTCTGACACTGTTCCACTTGCTTTAAAATACTGTTCCATGTCAAAGATGAAATTCTCCAGTTCTTTAGCATCGCGGTTCCCGCTAAAGGCTTTGGGTTCCGGGATCTTGAATCTATTGGCATAGCAAGCGTTTGGTTCGGGGTTTGGTTCCCCACGGCTCGCATTGTTAGGTTGACCTGAGTCTTCATCTCGGTCATCTCAGCCCTGATGGTTTCCACCGTTGCCCTGAAATCGTCGGTCAAGTCATTAAACAGCTTTAACATGACCTTGTGGGAGCTATCGAGCTCTTCAACACGTTCTTCCATATGTGCGACTGAGCTTGTGGAGCTATCCCCACGTTCAAAACTACCAGGACGTGTAGTTTTGTGTTCCAAGGAGGCGACCCTTAGCGTCAACTCTGTGATTGGTAGCGCGTCTACTCGAGCGTTCAGCGCATCGATTTCTCTGACCTTCTCATCCAACCCTTCTAGCCGGGCTTGGATGAATCTTACATCGTCGGGAACTTCCCTTAGATATAGCCACTGCTCTTCTATCTCAGTAAGTCGCTCAGATTGCGACTTGTTCAATTGCTTTACCGTCGACATGATAGCGGTACTTGACAGCCAAGGAGCTAACTAAGCTCTGATACCAAGTGTCACAATCGCTTACTTTCAGATACGGGACAGGCGATTGTGCGGCACTGCTCTAACCCGGCGAGCAAGTCAGCCGTACAAAAACCGTGGGTCGCGGGCAAACTCGGGGTATGATGTAGCCTCTACTCACGTTTCGAGAGAAAATGGTTTTATAAAACGAGAGAGAGGGAAAGCTTTGAAAACATCATACAATAAAGCATTGAGGACTGGCAATTGCAAGAAAGCTTGTTTGCAAAGAGTACAACAATACTTGGTCGGGGAGTCAACTAGTGGGGGTCCCCTATAGTACATTCTAAGCAAAAACTAGTCTGCCAGCCTTGCATATGAAAACTGGCGAAACGTCACTCAAAAGGAAAACAACATGAAAATGAAAACAACTTCCTAAGCTACTTACAAGACATGAATATAAGGTGGTTGAGGGTGGTTTGGGCATGTGGCCATAGGCAAACACTCCCTGGACAAGCATGCTCAAGACACTAAGGAATAGAATGGAGGAGAATTGTTAGAACCACGAAATAGAGGTTGTGCTTGATTGTTGAGCAGAAGGGTGGAAATTCGCCGGAGAAAAAAAAAAATCGCATTGAAGCTGAAAAAGAAAAGAAAATCACATAGAAAAAAAAAAAGAAAGGATGAATTTGTAACTTCACTCGTTCACACCGAATGGATTTGACATTTTAAAAAAAACGGTGTTATTGAACATTTTGAGCCTTTAAAAATAGGTTGTCTGTGCAATTTTCTCTGGTTTCCTCCTTGACTTAAAAAAATTTATCCATCAGCTGGTTCTGTGTCCCGACGAGGCGACGGCCGGTGATCACAATTCCAGGAACAAAGAAGTTTCCCGGCCGCAGGTACCGTATTTGCAAAATTCACGGTTGGAATCTTATTTCATGGCCCAGAACGAGGAGCAATTACCGAACAGGGACGAGCTCGCCGAGTCGCTTAACGAATTCTTCACCAGCGTATCTGAAATGATCAAATCGGATCTTCTTGTATGTAATCTCCCTAACCCCTAATTCTCTCTGTTTCATCTTGTTATTTCGCTAATTATGTCGTTTGGGTCTTTCCCTCTGATTTGATTCTGCCCTTTGGTCGATGTTGGTTCTTCAATGTGTTAAGACTTATTCTCAGAACAAAGTGCCTCAGGCTTTGAATGGGGTTTTAACGACTATTAGGTTTGGGAAATCAATCACCCATGTTTTAGGGCTTGACTAATGTTGTATTTTGAGTTTAGAGTAGTTGAAAGCTTGATTGATATAGGAACATCTTTGACATGTTCTTAAGCCCTCCAAGGAGAAATTAAGGTAGAGAGATTAAAGGCCTTAAAGGAATGCAAACGTTTACATCACTAAAAAGTATTAGAAACACCAGATCCATAGTTTATTGAGTCTCCCAATAAGCCCCACACATAATGCACCATGAATGAGAAAGAGAGAAATGAGGCATTTTCATCTGAAGGTGATCTGCCATGTTGATTCCCCATGACTAAGCACACATCAAAAATTCTCAATTTGAACCTTCCCAGAAAATATCCCAAAAAATCTTCTCAATCAATTTGGCAACCTTGCTACTGTACTAAGTAATTTGAATAAAGTGAGGTAATAAAAAGGCAGCTTTAGTTCTTGATAGTTTTCTTTATTGTACTGCCGTTTAGATGGTCACTGTATTCTACCACAATGGATTATTTTCTTGATTGTTTAGTCTTAGGGGCCAAATTACAGTCGATTAAAGACTTTTACATCAGTAACTTCAGCCTATCCTTGTATATAATAAGGTGTCTACTGTCTGCCTGTATTTTGACATCTTTTGTCATCTTGAATAAAATCTCCTCACTGGTTTACATCACTGATTGTGATTGGCAAACCATCAAGCCTTGAGTGACCAATTTCGCCCTTTCACTATCTTCTTCTTCTTCTTTGTAGTTCCCATGACCCTTTTAATTCTCCATGTAGTACTATTGTAATCAAAACCTGGAAATTTGTTTTAATGTTTGATCAATTACTTACTATGTTTAACAATGATAAAACTTGAGGTTTGGTTTACTGATCAATGAATCGAAGAGGTGGGAATCAGCTTTCAGAGCCATATGTTTGGAATGTTTGTGGGAAAAATGATGGTGGGTTTACTATTTTGTCATATAGGGATCAAGTAATCAGCTGACACTTTTAGAGAGAATGAACCTCAGGGTGGCAGAAGAGTATAAAGGTTTTGGCGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAACTGAAATCAAAGAGTGGTGGGTTTGATGAGTATATACACCAAATTGAGAAAATAGAACATCAGGTGACTGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCATGTTTCCATGTTGGAATCTAAAGTACTATCTGTTTGTCAAAACACGCCTTAATGAATAAATTTATTTTTTCATCTTCAAAATTCAGAACAATTGTTTTCTTAATGATTTTGCTTCTATATTGCTGCTCATTGTCGAATCCTTTTATGATGTCTTATTCATTGGAAGTTGATGGCGCAAAAGAGTTGGCATCTTGTTTCCCTTCCTGCTAA

mRNA sequence

ATGCAGCTGGTTCTGTGTCCCGACGAGGCGACGGCCGGTGATCACAATTCCAGGAACAAAGAAGTTTCCCGGCCGCAGGTACCGTATTTGCAAAATTCACGGTTGGAATCTTATTTCATGGCCCAGAACGAGGAGCAATTACCGAACAGGGACGAGCTCGCCGAGTCGCTTAACGAATTCTTCACCAGCGTATCTGAAATGATCAAATCGGATCTTCTTGGATCAAGTAATCAGCTGACACTTTTAGAGAGAATGAACCTCAGGGTGGCAGAAGAGTATAAAGGTTTTGGCGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAACTGAAATCAAAGAGTGGTGGGTTTGATGAGTATATACACCAAATTGAGAAAATAGAACATCAGGTGACTGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCATGTTTCCATAACAATTGTTTTCTTAATGATTTTGCTTCTATATTGCTGCTCATTGTCGAATCCTTTTATGATGTCTTATTCATTGGAAGTTGATGGCGCAAAAGAGTTGGCATCTTGTTTCCCTTCCTGCTAA

Coding sequence (CDS)

ATGCAGCTGGTTCTGTGTCCCGACGAGGCGACGGCCGGTGATCACAATTCCAGGAACAAAGAAGTTTCCCGGCCGCAGGTACCGTATTTGCAAAATTCACGGTTGGAATCTTATTTCATGGCCCAGAACGAGGAGCAATTACCGAACAGGGACGAGCTCGCCGAGTCGCTTAACGAATTCTTCACCAGCGTATCTGAAATGATCAAATCGGATCTTCTTGGATCAAGTAATCAGCTGACACTTTTAGAGAGAATGAACCTCAGGGTGGCAGAAGAGTATAAAGGTTTTGGCGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAACTGAAATCAAAGAGTGGTGGGTTTGATGAGTATATACACCAAATTGAGAAAATAGAACATCAGGTGACTGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCATGTTTCCATAACAATTGTTTTCTTAATGATTTTGCTTCTATATTGCTGCTCATTGTCGAATCCTTTTATGATGTCTTATTCATTGGAAGTTGATGGCGCAAAAGAGTTGGCATCTTGTTTCCCTTCCTGCTAA

Protein sequence

MQLVLCPDEATAGDHNSRNKEVSRPQVPYLQNSRLESYFMAQNEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLTLLERMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSITIVFLMILLLYCCSLSNPFMMSYSLEVDGAKELASCFPSC
Homology
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BLAST of CaUC07G139710 vs. NCBI nr
Match: XP_038880795.1 (biogenesis of lysosome-related organelles complex 1 subunit 2 [Benincasa hispida])

HSP 1 Score: 199.1 bits (505), Expect = 3.3e-47
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 40  MAQNEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLTLLERMNLRVAEEYKGFGDV 99
           MAQ EEQ PNRDELAESLNEFFTSVSEMIKSDLLGSSNQL LLERMNLRVAEEYKGFGDV
Sbjct: 1   MAQKEEQPPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLERMNLRVAEEYKGFGDV 60

Query: 100 ASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSI 148
           ASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVS+
Sbjct: 61  ASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSM 108

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BLAST of CaUC07G139710 vs. NCBI nr
Match: XP_008455567.1 (PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 2.1e-46
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 40  MAQNEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLTLLERMNLRVAEEYKGFGDV 99
           MAQ EE+LPNRDELAESLNEFFTSVSEMIKSDLLGSSNQL LLERMN RVAEEYKG+GDV
Sbjct: 1   MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDV 60

Query: 100 ASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSI 148
           ASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVS+
Sbjct: 61  ASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSM 108

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BLAST of CaUC07G139710 vs. NCBI nr
Match: XP_004137147.1 (biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis sativus] >KGN53763.1 hypothetical protein Csa_014951 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 2.8e-46
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 0 

Query: 40  MAQNEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLTLLERMNLRVAEEYKGFGDV 99
           MAQ EE+LPNRD+LAESLNEFFTSVSEMIKSDLLGSSNQL LLERMNLRVAEEYKGFGDV
Sbjct: 1   MAQKEERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV 60

Query: 100 ASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSI 148
           ASGMRVFVEQLKSKSGGFDEYI+QIEKIEHQVTEFEAVISMLDKHVS+
Sbjct: 61  ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSM 108

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BLAST of CaUC07G139710 vs. NCBI nr
Match: XP_022949044.1 (biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita moschata] >XP_022997803.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita maxima])

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-42
Identity = 97/109 (88.99%), Postives = 104/109 (95.41%), Query Frame = 0 

Query: 40  MAQNEE-QLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLTLLERMNLRVAEEYKGFGD 99
           MA+ EE QLPN DELAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MNLRVAEEYKG GD
Sbjct: 1   MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGD 60

Query: 100 VASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSI 148
           VASGMRVFVEQLK+KSGGFDEYI+QIEKIE+QVTEFEAVISMLDKH+S+
Sbjct: 61  VASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISM 109

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BLAST of CaUC07G139710 vs. NCBI nr
Match: KAG7036775.1 (Kanadaptin [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.6 bits (462), Expect = 3.2e-42
Identity = 96/109 (88.07%), Postives = 104/109 (95.41%), Query Frame = 0 

Query: 40  MAQNEE-QLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLTLLERMNLRVAEEYKGFGD 99
           MA+ EE QLPN DELAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MN+RVAEEYKG GD
Sbjct: 1   MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNIRVAEEYKGLGD 60

Query: 100 VASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSI 148
           VASGMRVFVEQLK+KSGGFDEYI+QIEKIE+QVTEFEAVISMLDKH+S+
Sbjct: 61  VASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISM 109

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BLAST of CaUC07G139710 vs. ExPASy Swiss-Prot
Match: F4K657 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Arabidopsis thaliana OX=3702 GN=BLOS2 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.2e-29
Identity = 64/99 (64.65%), Postives = 83/99 (83.84%), Query Frame = 0 

Query: 49  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLTLLERMNLRVAEEYKGFGDVASGMRVFVE 108
           +RD+LAESL   FTSVS M+KS+L G++N L LLE+MNLRVA EY   GDVA+G+RVF E
Sbjct: 4   SRDDLAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGLRVFAE 63

Query: 109 QLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSI 148
           Q+KSKSGG DE++ Q++ IE QV+EFEAVIS+LD++VS+
Sbjct: 64  QMKSKSGGLDEFVGQMDAIEKQVSEFEAVISVLDRYVSV 102

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BLAST of CaUC07G139710 vs. ExPASy Swiss-Prot
Match: Q54Y67 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Dictyostelium discoideum OX=44689 GN=bloc1s2 PE=3 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-08
Identity = 33/98 (33.67%), Postives = 54/98 (55.10%), Query Frame = 0 

Query: 47  LPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLTLLERMNLRVAEEYKGFGDVASGMRVF 106
           LP  ++L  S  E FT VS  IKS+L  + +   LL +MN   + +Y+   +V  G+ VF
Sbjct: 72  LPVTEDLQNSTKEMFTKVSSYIKSELATTVSDYNLLIQMNNITSSKYQDMTNVTKGLSVF 131

Query: 107 VEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKH 145
           +  LK K   F  Y  +I +++  VT+ E  + +LD++
Sbjct: 132 MGDLKIKYEEFQPYFDKINELDKNVTDLEKTVQLLDEY 169

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BLAST of CaUC07G139710 vs. ExPASy TrEMBL
Match: A0A1S3C0T0 (biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucumis melo OX=3656 GN=LOC103495715 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.0e-46
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 40  MAQNEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLTLLERMNLRVAEEYKGFGDV 99
           MAQ EE+LPNRDELAESLNEFFTSVSEMIKSDLLGSSNQL LLERMN RVAEEYKG+GDV
Sbjct: 1   MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDV 60

Query: 100 ASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSI 148
           ASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVS+
Sbjct: 61  ASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSM 108

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BLAST of CaUC07G139710 vs. ExPASy TrEMBL
Match: A0A0A0KW18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G123360 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.4e-46
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 0 

Query: 40  MAQNEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLTLLERMNLRVAEEYKGFGDV 99
           MAQ EE+LPNRD+LAESLNEFFTSVSEMIKSDLLGSSNQL LLERMNLRVAEEYKGFGDV
Sbjct: 1   MAQKEERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV 60

Query: 100 ASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSI 148
           ASGMRVFVEQLKSKSGGFDEYI+QIEKIEHQVTEFEAVISMLDKHVS+
Sbjct: 61  ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSM 108

[Close]
BLAST of CaUC07G139710 vs. ExPASy TrEMBL
Match: A0A6J1KEZ0 (biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111492648 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 9.1e-43
Identity = 97/109 (88.99%), Postives = 104/109 (95.41%), Query Frame = 0 

Query: 40  MAQNEE-QLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLTLLERMNLRVAEEYKGFGD 99
           MA+ EE QLPN DELAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MNLRVAEEYKG GD
Sbjct: 1   MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGD 60

Query: 100 VASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSI 148
           VASGMRVFVEQLK+KSGGFDEYI+QIEKIE+QVTEFEAVISMLDKH+S+
Sbjct: 61  VASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISM 109

[Close]
BLAST of CaUC07G139710 vs. ExPASy TrEMBL
Match: A0A6J1GBP4 (biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111452507 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 9.1e-43
Identity = 97/109 (88.99%), Postives = 104/109 (95.41%), Query Frame = 0 

Query: 40  MAQNEE-QLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLTLLERMNLRVAEEYKGFGD 99
           MA+ EE QLPN DELAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MNLRVAEEYKG GD
Sbjct: 1   MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGD 60

Query: 100 VASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSI 148
           VASGMRVFVEQLK+KSGGFDEYI+QIEKIE+QVTEFEAVISMLDKH+S+
Sbjct: 61  VASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISM 109

[Close]
BLAST of CaUC07G139710 vs. ExPASy TrEMBL
Match: A0A6J1DL99 (biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111022173 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 5.3e-35
Identity = 82/91 (90.11%), Postives = 84/91 (92.31%), Query Frame = 0 

Query: 40  MAQNEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLTLLERMNLRVAEEYKGFGDV 99
           MA  EEQLPNRDELA SLNEFFTSVS+MIKSDLLGSSNQL LLE+MNLRVAEEYKGFGDV
Sbjct: 1   MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDV 60

Query: 100 ASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQ 131
           ASGMRVFVEQLKSKSGGFD YI QIE IEHQ
Sbjct: 61  ASGMRVFVEQLKSKSGGFDAYISQIENIEHQ 91

[Close]
BLAST of CaUC07G139710 vs. TAIR 10
Match: AT5G49550.1 (Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1. )

HSP 1 Score: 129.8 bits (325), Expect = 2.3e-30
Identity = 64/99 (64.65%), Postives = 83/99 (83.84%), Query Frame = 0 

Query: 49  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLTLLERMNLRVAEEYKGFGDVASGMRVFVE 108
           +RD+LAESL   FTSVS M+KS+L G++N L LLE+MNLRVA EY   GDVA+G+RVF E
Sbjct: 4   SRDDLAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGLRVFAE 63

Query: 109 QLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSI 148
           Q+KSKSGG DE++ Q++ IE QV+EFEAVIS+LD++VS+
Sbjct: 64  QMKSKSGGLDEFVGQMDAIEKQVSEFEAVISVLDRYVSV 102

The following BLAST results are available for this feature:
BLAST of CaUC07G139710 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038880795.13.3e-4796.30biogenesis of lysosome-related organelles complex 1 subunit 2 [Benincasa hispida... [more]
XP_008455567.12.1e-4694.44PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumi... [more]
XP_004137147.12.8e-4694.44biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis sativus] ... [more]
XP_022949044.11.9e-4288.99biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita moschat... [more]
KAG7036775.13.2e-4288.07Kanadaptin [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CaUC07G139710 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4K6573.2e-2964.65Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Arabidopsis tha... [more]
Q54Y671.4e-0833.67Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Dictyostelium d... [more]
BLAST of CaUC07G139710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3C0T01.0e-4694.44biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucumis melo OX... [more]
A0A0A0KW181.4e-4694.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G123360 PE=3 SV=1[more]
A0A6J1KEZ09.1e-4388.99biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucurbita maxim... [more]
A0A6J1GBP49.1e-4388.99biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucurbita mosch... [more]
A0A6J1DL995.3e-3590.11biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X4 OS=Momo... [more]
BLAST of CaUC07G139710 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G49550.12.3e-3064.65Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction wi... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019269Biogenesis of lysosome-related organelles complex-1, subunit 2PFAMPF10046BLOC1_2coord: 59..145
e-value: 7.6E-22
score: 77.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR47882BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 2coord: 29..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC07G139710.1CaUC07G139710.1mRNA