CaUC07G132890 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC07G132890
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr07: 21626243 .. 21627418 (+)
RNA-Seq ExpressionCaUC07G132890
SyntenyCaUC07G132890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCTATGATGTTTACACTCCCGAGACGGCGAAAGATGGTCGGAGTCAACAGTATCGCCGCCTTCTCCCCTTCCATGAATTTCACGGATTTAAAAGACAACGTCTGGAAAGTTCGAAGCGGCACGAGATCTATATGAAATCGAATTTTCAAATCCTGAGCGAACTGGCAAAGATTCTCTCTAATCAACCTACTCTCAATCGCAAACTCCTCAGGCACGACGGCGGTAATCCGAAGCACCGGTGGAACCATGTTCTTGGATTCTGCTTTATCAGCAATCTCCTTCATGAAAGAGGCGTACTGCCCTCCAAATCCAATATCGAAATCAACAATATGAATGAAAGAGGAAGCGTTAAGAGCTTCGAGAAGGGCCTGATTGGTGGTGAAGTGAGAAAACATGGGAATCGGAGAAATTACAGAGAAGGTCTTGTAGGCCTTAATAGTATGGACGATATCGGGCCAGGAAGAGAGACGATTATGGCGGTTGGGAGAGGGAGAGAGGAGAGATTGAAGAGCTTCAATGAAGAAGAAAGAGGCCCTGTGAAGGGGGTTAGTGGAGGAGGCGGATTGAAGGCGTTGATTGAGGCGGTCCAATATGACATGAGCGAGTTGGAAATCATTGGAATCGAAGGAATCGGCAGCAGCAACAATATCTTCGAGGAAATCAAGAGATGGGTTGTTGGAATTGAAGGAATTGAAGGATTGGAGCATGGTGGGGGAGTGATTGGAAAAGGGTTCAGAGAGGAAGAAATCAGGGGGAAGAAGGTGGGAAGATTGGTCAAAGGATTGGGAGTGGAGAAAGTCAGGAAAGTGAGGAAGAGGATGATGATGGTGATGATGATGGTGATTATGGTTGGTGGTGGTGGTGGTAGTGATGTTGTTGTTGTTGTTCTTGAGAGCAGAATTGGAGTCATCGTGTAACCCCAAATCACCCATGATGGAGTCCCAATCCAAATTGTGAAGAGTGTGTTCATCCCATTCTACAGAAGGATTGTTGTTGTGAGGATCCTCAGCAGAGGAGAGGGGGTTGTCGTGAGCCACGGGGCTAGGACTGCGGCGGAGATCAAGGACGGAGGTGGGTTCGTAACAGGTTGTGGTGGTGGGGGTGGGGGTGGGGGTGGGGGTGGGAGTGTGGAAAGCGATGGTAGAGGGGGAGGAGTGGAGTTTAGGAGTAGAAGA

mRNA sequence

GGCTATGATGTTTACACTCCCGAGACGGCGAAAGATGGTCGGAGTCAACAGTATCGCCGCCTTCTCCCCTTCCATGAATTTCACGGATTTAAAAGACAACGTCTGGAAAGTTCGAAGCGGCACGAGATCTATATGAAATCGAATTTTCAAATCCTGAGCGAACTGGCAAAGATTCTCTCTAATCAACCTACTCTCAATCGCAAACTCCTCAGGCACGACGGCGGTAATCCGAAGCACCGGTGGAACCATGTTCTTGGATTCTGCTTTATCAGCAATCTCCTTCATGAAAGAGGCGTACTGCCCTCCAAATCCAATATCGAAATCAACAATATGAATGAAAGAGGAAGCGTTAAGAGCTTCGAGAAGGGCCTGATTGGTGGTGAAGTGAGAAAACATGGGAATCGGAGAAATTACAGAGAAGGTCTTGTAGGCCTTAATAGTATGGACGATATCGGGCCAGGAAGAGAGACGATTATGGCGGTTGGGAGAGGGAGAGAGGAGAGATTGAAGAGCTTCAATGAAGAAGAAAGAGGCCCTGTGAAGGGGGTTAGTGGAGGAGGCGGATTGAAGGCGTTGATTGAGGCGGTCCAATATGACATGAGCGAGTTGGAAATCATTGGAATCGAAGGAATCGGCAGCAGCAACAATATCTTCGAGGAAATCAAGAGATGGGTTGTTGGAATTGAAGGAATTGAAGGATTGGAGCATGGTGGGGGAGTGATTGGAAAAGGGTTCAGAGAGGAAGAAATCAGGGGGAAGAAGGTGGGAAGATTGGTCAAAGGATTGGGAGTGGAGAAAGTCAGGAAAGTGAGGAAGAGGATGATGATGGTGATGATGATGGTGATTATGGTTGGTGGTGGTGGTGGTAGTGATGTTGTTGTTGTTGTTCTTGAGAGCAGAATTGGAGTCATCGTAAGGATTGTTGTTGTGAGGATCCTCAGCAGAGGAGAGGGGGTTGTCGTGAGCCACGGGGCTAGGACTGCGGCGGAGATCAAGGACGGAGGTGGGTTCGTAACAGGTTGTGGTGGTGGGGGTGGGGGTGGGGGTGGGGGTGGGAGTGTGGAAAGCGATGGTAGAGGGGGAGGAGTGGAGTTTAGGAGTAGAAGA

Coding sequence (CDS)

GGCTATGATGTTTACACTCCCGAGACGGCGAAAGATGGTCGGAGTCAACAGTATCGCCGCCTTCTCCCCTTCCATGAATTTCACGGATTTAAAAGACAACGTCTGGAAAGTTCGAAGCGGCACGAGATCTATATGAAATCGAATTTTCAAATCCTGAGCGAACTGGCAAAGATTCTCTCTAATCAACCTACTCTCAATCGCAAACTCCTCAGGCACGACGGCGGTAATCCGAAGCACCGGTGGAACCATGTTCTTGGATTCTGCTTTATCAGCAATCTCCTTCATGAAAGAGGCGTACTGCCCTCCAAATCCAATATCGAAATCAACAATATGAATGAAAGAGGAAGCGTTAAGAGCTTCGAGAAGGGCCTGATTGGTGGTGAAGTGAGAAAACATGGGAATCGGAGAAATTACAGAGAAGGTCTTGTAGGCCTTAATAGTATGGACGATATCGGGCCAGGAAGAGAGACGATTATGGCGGTTGGGAGAGGGAGAGAGGAGAGATTGAAGAGCTTCAATGAAGAAGAAAGAGGCCCTGTGAAGGGGGTTAGTGGAGGAGGCGGATTGAAGGCGTTGATTGAGGCGGTCCAATATGACATGAGCGAGTTGGAAATCATTGGAATCGAAGGAATCGGCAGCAGCAACAATATCTTCGAGGAAATCAAGAGATGGGTTGTTGGAATTGAAGGAATTGAAGGATTGGAGCATGGTGGGGGAGTGATTGGAAAAGGGTTCAGAGAGGAAGAAATCAGGGGGAAGAAGGTGGGAAGATTGGTCAAAGGATTGGGAGTGGAGAAAGTCAGGAAAGTGAGGAAGAGGATGATGATGGTGATGATGATGGTGATTATGGTTGGTGGTGGTGGTGGTAGTGATGTTGTTGTTGTTGTTCTTGAGAGCAGAATTGGAGTCATCGTAAGGATTGTTGTTGTGAGGATCCTCAGCAGAGGAGAGGGGGTTGTCGTGAGCCACGGGGCTAGGACTGCGGCGGAGATCAAGGACGGAGGTGGGTTCGTAACAGGTTGTGGTGGTGGGGGTGGGGGTGGGGGTGGGGGTGGGAGTGTGGAAAGCGATGGTAGAGGGGGAGGAGTGGAGTTTAGGAGTAGAAGA

Protein sequence

GYDVYTPETAKDGRSQQYRRLLPFHEFHGFKRQRLESSKRHEIYMKSNFQILSELAKILSNQPTLNRKLLRHDGGNPKHRWNHVLGFCFISNLLHERGVLPSKSNIEINNMNERGSVKSFEKGLIGGEVRKHGNRRNYREGLVGLNSMDDIGPGRETIMAVGRGREERLKSFNEEERGPVKGVSGGGGLKALIEAVQYDMSELEIIGIEGIGSSNNIFEEIKRWVVGIEGIEGLEHGGGVIGKGFREEEIRGKKVGRLVKGLGVEKVRKVRKRMMMVMMMVIMVGGGGGSDVVVVVLESRIGVIVRIVVVRILSRGEGVVVSHGARTAAEIKDGGGFVTGCGGGGGGGGGGGSVESDGRGGGVEFRSRR
Homology
[Close]
BLAST of CaUC07G132890 vs. NCBI nr
Match: KAF7809746.1 (homeobox-leucine zipper protein ATHB-40 [Senna tora])

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-07
Identity = 36/95 (37.89%), Postives = 63/95 (66.32%), Query Frame = 0 

Query: 38  SKRHEIYMKSNFQILSELAKILSNQPTLNRKLLRHDGGNPKHRWNHVLGFCFISNLLHER 97
           S+RH++ + S+ +I S+L +ILS Q T +   LRH  G+ K R   +     + +LLH+R
Sbjct: 173 SQRHKLDLDSDSEIKSKLIQILSYQLTFHGVFLRHKRGDSKERRVELTRLRLLGDLLHQR 232

Query: 98  GVLPSKSNIEINNMNERGSVKSFEKGLIGGEVRKH 133
           GVL S++++EI++++E  S++  E+ L+GGE  +H
Sbjct: 233 GVLNSQTDLEIDDVHEGRSMEGLEECLVGGEDGEH 267

The following BLAST results are available for this feature:
BLAST of CaUC07G132890 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF7809746.11.7e-0737.89homeobox-leucine zipper protein ATHB-40 [Senna tora][more]
BLAST of CaUC07G132890 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC07G132890 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC07G132890 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 345..369

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC07G132890.1CaUC07G132890.1mRNA