CaUC07G131770 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC07G131770
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Ribulose bisphosphate carboxylase large chain
Location	Ciama_Chr07: 17456220 .. 17456489 (-)
RNA-Seq Expression	CaUC07G131770
Synteny	CaUC07G131770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTCTAAATTGACTTATTCGACTCCTAAATATGAAACCAAATATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCAGGAGTTCCACCCGAGGAAGTAGGGGCCGCTGTAGCTGCTGAATCTTCTATTGGTACATGGACAACTGTGTGGACCGATGGGCTTAGCAGTCTTGATCATTACAAAGGATGA

mRNA sequence

ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTCTAAATTGACTTATTCGACTCCTAAATATGAAACCAAATATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCAGGAGTTCCACCCGAGGAAGTAGGGGCCGCTGTAGCTGCTGAATCTTCTATTGGTACATGGACAACTGTGTGGACCGATGGGCTTAGCAGTCTTGATCATTACAAAGGATGA

Coding sequence (CDS)

ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTCTAAATTGACTTATTCGACTCCTAAATATGAAACCAAATATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCAGGAGTTCCACCCGAGGAAGTAGGGGCCGCTGTAGCTGCTGAATCTTCTATTGGTACATGGACAACTGTGTGGACCGATGGGCTTAGCAGTCTTGATCATTACAAAGGATGA

Protein sequence

MSCREGLMSPQTETKASVGFKAGVKDSKLTYSTPKYETKYTDILAAFRVTPQPGVPPEEVGAAVAAESSIGTWTTVWTDGLSSLDHYKG

Homology

[Close]

BLAST of CaUC07G131770 vs. NCBI nr
Match: XP_038874334.1 (LOW QUALITY PROTEIN: ribulose bisphosphate carboxylase large chain-like [Benincasa hispida])

HSP 1 Score: 166.8 bits (421), Expect = 8.6e-38
Identity = 82/89 (92.13%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1  MSCREGLMSPQTETKASVGFKAGVKDSKLTYSTPKYETKYTDILAAFRVTPQPGVPPEEV 60
          MSCREGLMSPQTETKASVGFKAGVKDSKLTYSTP+YETK TDILAAFRVTPQP VPPEE 
Sbjct: 1  MSCREGLMSPQTETKASVGFKAGVKDSKLTYSTPEYETKDTDILAAFRVTPQPXVPPEEA 60

Query: 61 GAAVAAESSIGTWTTVWTDGLSSLDHYKG 90
          GAAVAAESS GTWTTVWTDGL+SLD YKG
Sbjct: 61 GAAVAAESSTGTWTTVWTDGLTSLDRYKG 89

[Close]

BLAST of CaUC07G131770 vs. NCBI nr
Match: KAE9593090.1 (Ribulose bisphosphate carboxylase large chain [Lupinus albus])

HSP 1 Score: 165.6 bits (418), Expect = 1.9e-37
Identity = 81/89 (91.01%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 1  MSCREGLMSPQTETKASVGFKAGVKDSKLTYSTPKYETKYTDILAAFRVTPQPGVPPEEV 60
          MSCREG MSPQTETKASVGFKAGVKD KLTY TP YETK TDILAAFRVTPQPGVPPEE 
Sbjct: 1  MSCREGFMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61 GAAVAAESSIGTWTTVWTDGLSSLDHYKG 90
          GAAVAAESS GTWTTVWTDGL+SLDHYKG
Sbjct: 61 GAAVAAESSTGTWTTVWTDGLTSLDHYKG 89

[Close]

BLAST of CaUC07G131770 vs. NCBI nr
Match: QXO02752.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cheirostylis moniliformis] >QXO02919.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cheirostylis thailandica])

HSP 1 Score: 165.2 bits (417), Expect = 2.5e-37
Identity = 81/89 (91.01%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MSCREGLMSPQTETKASVGFKAGVKDSKLTYSTPKYETKYTDILAAFRVTPQPGVPPEEV 60
          MSCREGLMSPQTETKASVGFKAGVKD KLTY TP+YETK TDILAAFRVTPQPGVPPEE 
Sbjct: 1  MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKSTDILAAFRVTPQPGVPPEEA 60

Query: 61 GAAVAAESSIGTWTTVWTDGLSSLDHYKG 90
          GAAVAAESS GTWTTVWTDGL+SLD YKG
Sbjct: 61 GAAVAAESSTGTWTTVWTDGLTSLDRYKG 89

[Close]

BLAST of CaUC07G131770 vs. NCBI nr
Match: QGQ56429.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cheirostylis chinensis])

HSP 1 Score: 165.2 bits (417), Expect = 2.5e-37
Identity = 81/89 (91.01%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MSCREGLMSPQTETKASVGFKAGVKDSKLTYSTPKYETKYTDILAAFRVTPQPGVPPEEV 60
          MSCREGLMSPQTETKASVGFKAGVKD KLTY TP+YETK TDILAAFRVTPQPGVPPEE 
Sbjct: 1  MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKSTDILAAFRVTPQPGVPPEEA 60

Query: 61 GAAVAAESSIGTWTTVWTDGLSSLDHYKG 90
          GAAVAAESS GTWTTVWTDGL+SLD YKG
Sbjct: 61 GAAVAAESSTGTWTTVWTDGLTSLDRYKG 89

[Close]

BLAST of CaUC07G131770 vs. NCBI nr
Match: XP_039827796.1 (LOW QUALITY PROTEIN: ribulose bisphosphate carboxylase large chain [Panicum virgatum])

HSP 1 Score: 165.2 bits (417), Expect = 2.5e-37
Identity = 80/89 (89.89%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MSCREGLMSPQTETKASVGFKAGVKDSKLTYSTPKYETKYTDILAAFRVTPQPGVPPEEV 60
          MSCREGLMSPQTETKASVGFKAGVKD KLTY TP+YETK TDILAAFRVTPQPGVPPEE 
Sbjct: 1  MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61 GAAVAAESSIGTWTTVWTDGLSSLDHYKG 90
          GAAVAAESS  TWTT+WTDGL+SLDHYKG
Sbjct: 61 GAAVAAESSTSTWTTIWTDGLTSLDHYKG 89

[Close]

BLAST of CaUC07G131770 vs. ExPASy Swiss-Prot
Match: P48683 (Ribulose bisphosphate carboxylase large chain OS=Ananas comosus OX=4615 GN=rbcL PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-35
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 8  MSPQTETKASVGFKAGVKDSKLTYSTPKYETKYTDILAAFRVTPQPGVPPEEVGAAVAAE 67
          MSPQTETKASVGFKAGVKD KLTY TP+YETK TDILAAFRVTPQPGVPPEE GAAVAAE
Sbjct: 1  MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68 SSIGTWTTVWTDGLSSLDHYKG 90
          SS GTWTTVWTDGL+SLD YKG
Sbjct: 61 SSTGTWTTVWTDGLTSLDRYKG 82

[Close]

BLAST of CaUC07G131770 vs. ExPASy Swiss-Prot
Match: Q37192 (Ribulose bisphosphate carboxylase large chain OS=Bartlettina sordida OX=13517 GN=rbcL PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-35
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 8  MSPQTETKASVGFKAGVKDSKLTYSTPKYETKYTDILAAFRVTPQPGVPPEEVGAAVAAE 67
          MSPQTETKASVGFKAGVKD KLTY TP+YETK TDILAAFRVTPQPGVPPEE GAAVAAE
Sbjct: 1  MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68 SSIGTWTTVWTDGLSSLDHYKG 90
          SS GTWTTVWTDGL+SLD YKG
Sbjct: 61 SSTGTWTTVWTDGLTSLDRYKG 82

[Close]

BLAST of CaUC07G131770 vs. ExPASy Swiss-Prot
Match: P48693 (Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus OX=13427 GN=rbcL PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-35
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 8  MSPQTETKASVGFKAGVKDSKLTYSTPKYETKYTDILAAFRVTPQPGVPPEEVGAAVAAE 67
          MSPQTETKASVGFKAGVKD KLTY TP+YETK TDILAAFRVTPQPGVPPEE GAAVAAE
Sbjct: 1  MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68 SSIGTWTTVWTDGLSSLDHYKG 90
          SS GTWTTVWTDGL+SLD YKG
Sbjct: 61 SSTGTWTTVWTDGLTSLDRYKG 82

[Close]

BLAST of CaUC07G131770 vs. ExPASy Swiss-Prot
Match: P28392 (Ribulose bisphosphate carboxylase large chain OS=Clarkia xantiana OX=3938 GN=rbcL PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-35
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 8  MSPQTETKASVGFKAGVKDSKLTYSTPKYETKYTDILAAFRVTPQPGVPPEEVGAAVAAE 67
          MSPQTETKASVGFKAGVKD KLTY TP+YETK TDILAAFRVTPQPGVPPEE GAAVAAE
Sbjct: 1  MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68 SSIGTWTTVWTDGLSSLDHYKG 90
          SS GTWTTVWTDGL+SLD YKG
Sbjct: 61 SSTGTWTTVWTDGLTSLDRYKG 82

[Close]

BLAST of CaUC07G131770 vs. ExPASy Swiss-Prot
Match: P31183 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Corynocarpus laevigatus OX=4312 GN=rbcL PE=3 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-35
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 8  MSPQTETKASVGFKAGVKDSKLTYSTPKYETKYTDILAAFRVTPQPGVPPEEVGAAVAAE 67
          MSPQTETKASVGFKAGVKD KLTY TP+YETK TDILAAFRVTPQPGVPPEE GAAVAAE
Sbjct: 1  MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68 SSIGTWTTVWTDGLSSLDHYKG 90
          SS GTWTTVWTDGL+SLD YKG
Sbjct: 61 SSTGTWTTVWTDGLTSLDRYKG 82

[Close]

BLAST of CaUC07G131770 vs. ExPASy TrEMBL
Match: A0A6A4NVB0 (Ribulose bisphosphate carboxylase large chain OS=Lupinus albus OX=3870 GN=Lalb_Chr19g0136111 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.3e-38
Identity = 81/89 (91.01%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 1  MSCREGLMSPQTETKASVGFKAGVKDSKLTYSTPKYETKYTDILAAFRVTPQPGVPPEEV 60
          MSCREG MSPQTETKASVGFKAGVKD KLTY TP YETK TDILAAFRVTPQPGVPPEE 
Sbjct: 1  MSCREGFMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61 GAAVAAESSIGTWTTVWTDGLSSLDHYKG 90
          GAAVAAESS GTWTTVWTDGL+SLDHYKG
Sbjct: 61 GAAVAAESSTGTWTTVWTDGLTSLDHYKG 89

[Close]

BLAST of CaUC07G131770 vs. ExPASy TrEMBL
Match: A0A650BKL8 (Ribulose bisphosphate carboxylase large chain OS=Cheirostylis chinensis OX=1898892 GN=rbcL PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-37
Identity = 81/89 (91.01%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MSCREGLMSPQTETKASVGFKAGVKDSKLTYSTPKYETKYTDILAAFRVTPQPGVPPEEV 60
          MSCREGLMSPQTETKASVGFKAGVKD KLTY TP+YETK TDILAAFRVTPQPGVPPEE 
Sbjct: 1  MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKSTDILAAFRVTPQPGVPPEEA 60

Query: 61 GAAVAAESSIGTWTTVWTDGLSSLDHYKG 90
          GAAVAAESS GTWTTVWTDGL+SLD YKG
Sbjct: 61 GAAVAAESSTGTWTTVWTDGLTSLDRYKG 89

[Close]

BLAST of CaUC07G131770 vs. ExPASy TrEMBL
Match: A0A4D6EVE5 (Ribulose bisphosphate carboxylase large chain OS=Pteroceltis tatarinowii OX=63062 GN=rbcL PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37
Identity = 81/89 (91.01%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MSCREGLMSPQTETKASVGFKAGVKDSKLTYSTPKYETKYTDILAAFRVTPQPGVPPEEV 60
          MSCREGLMSPQTETKASVGFKAGVKD KLTY TP+YETK TDILAAFRVTPQPGVPPEE 
Sbjct: 1  MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61 GAAVAAESSIGTWTTVWTDGLSSLDHYKG 90
          GAAVAAESS GTWTTVWTDGL+SLD YKG
Sbjct: 61 GAAVAAESSTGTWTTVWTDGLTSLDRYKG 89

[Close]

BLAST of CaUC07G131770 vs. ExPASy TrEMBL
Match: A0A6B9TQC7 (Ribulose bisphosphate carboxylase large chain OS=Debregeasia longifolia OX=242038 GN=rbcl PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37
Identity = 81/89 (91.01%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MSCREGLMSPQTETKASVGFKAGVKDSKLTYSTPKYETKYTDILAAFRVTPQPGVPPEEV 60
          MSCREGLMSPQTETKASVGFKAGVKD KLTY TP+YETK TDILAAFRVTPQPGVPPEE 
Sbjct: 1  MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61 GAAVAAESSIGTWTTVWTDGLSSLDHYKG 90
          GAAVAAESS GTWTTVWTDGL+SLD YKG
Sbjct: 61 GAAVAAESSTGTWTTVWTDGLTSLDRYKG 89

[Close]

BLAST of CaUC07G131770 vs. ExPASy TrEMBL
Match: A0A6B9TU59 (Ribulose bisphosphate carboxylase large chain OS=Debregeasia saeneb OX=1037061 GN=rbcl PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37
Identity = 81/89 (91.01%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MSCREGLMSPQTETKASVGFKAGVKDSKLTYSTPKYETKYTDILAAFRVTPQPGVPPEEV 60
          MSCREGLMSPQTETKASVGFKAGVKD KLTY TP+YETK TDILAAFRVTPQPGVPPEE 
Sbjct: 1  MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61 GAAVAAESSIGTWTTVWTDGLSSLDHYKG 90
          GAAVAAESS GTWTTVWTDGL+SLD YKG
Sbjct: 61 GAAVAAESSTGTWTTVWTDGLTSLDRYKG 89

[Close]

BLAST of CaUC07G131770 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 148.7 bits (374), Expect = 2.3e-36
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 8  MSPQTETKASVGFKAGVKDSKLTYSTPKYETKYTDILAAFRVTPQPGVPPEEVGAAVAAE 67
          MSPQTETKASVGFKAGVK+ KLTY TP+YETK TDILAAFRVTPQPGVPPEE GAAVAAE
Sbjct: 1  MSPQTETKASVGFKAGVKEYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68 SSIGTWTTVWTDGLSSLDHYKG 90
          SS GTWTTVWTDGL+SLD YKG
Sbjct: 61 SSTGTWTTVWTDGLTSLDRYKG 82

The following BLAST results are available for this feature:

BLAST of CaUC07G131770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874334.1	8.6e-38	92.13	LOW QUALITY PROTEIN: ribulose bisphosphate carboxylase large chain-like [Beninca...	[more]
KAE9593090.1	1.9e-37	91.01	Ribulose bisphosphate carboxylase large chain [Lupinus albus]	[more]
QXO02752.1	2.5e-37	91.01	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cheirostylis moni...	[more]
QGQ56429.1	2.5e-37	91.01	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cheirostylis chin...	[more]
XP_039827796.1	2.5e-37	89.89	LOW QUALITY PROTEIN: ribulose bisphosphate carboxylase large chain [Panicum virg...	[more]

BLAST of CaUC07G131770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P48683	1.1e-35	90.24	Ribulose bisphosphate carboxylase large chain OS=Ananas comosus OX=4615 GN=rbcL ...	[more]
Q37192	1.1e-35	90.24	Ribulose bisphosphate carboxylase large chain OS=Bartlettina sordida OX=13517 GN...	[more]
P48693	1.1e-35	90.24	Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus OX=13427 GN=r...	[more]
P28392	1.1e-35	90.24	Ribulose bisphosphate carboxylase large chain OS=Clarkia xantiana OX=3938 GN=rbc...	[more]
P31183	1.1e-35	90.24	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Corynocarpus laeviga...	[more]

BLAST of CaUC07G131770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A4NVB0	9.3e-38	91.01	Ribulose bisphosphate carboxylase large chain OS=Lupinus albus OX=3870 GN=Lalb_C...	[more]
A0A650BKL8	1.2e-37	91.01	Ribulose bisphosphate carboxylase large chain OS=Cheirostylis chinensis OX=18988...	[more]
A0A4D6EVE5	1.6e-37	91.01	Ribulose bisphosphate carboxylase large chain OS=Pteroceltis tatarinowii OX=6306...	[more]
A0A6B9TQC7	1.6e-37	91.01	Ribulose bisphosphate carboxylase large chain OS=Debregeasia longifolia OX=24203...	[more]
A0A6B9TU59	1.6e-37	91.01	Ribulose bisphosphate carboxylase large chain OS=Debregeasia saeneb OX=1037061 G...	[more]

BLAST of CaUC07G131770 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00490.1	2.3e-36	89.02	ribulose-bisphosphate carboxylases	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	PFAM	PF02788	RuBisCO_large_N	coord: 31..88 e-value: 2.0E-17 score: 63.5
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	GENE3D	3.30.70.150		coord: 15..89 e-value: 3.4E-24 score: 87.2
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	SUPERFAMILY	54966	RuBisCO, large subunit, small (N-terminal) domain	coord: 15..89
None	No IPR available	PANTHER	PTHR42704:SF9	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN	coord: 1..89
IPR033966	RuBisCO	PANTHER	PTHR42704	RIBULOSE BISPHOSPHATE CARBOXYLASE	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC07G131770.1	CaUC07G131770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0015977	carbon fixation
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity