CaUC07G130670 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC07G130670
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	AP complex subunit sigma
Location	Ciama_Chr07: 10181795 .. 10183768 (-)
RNA-Seq Expression	CaUC07G130670
Synteny	CaUC07G130670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACGAGCGGTGATAGTGATGAATACTCAGGGCAAGCCTCGGTTTGCTAAATTCTACGATTTTCAGGTTCCTTTATGGGGATTTTTGTGGATGTTTTTTTTTTGGGTACTTTTTGTGTTATTTCTATCAAATGATCTGTCTGATGATGAATTCTCAAATTAAGCCTGTAGAGAAGCAGCAGGAGCTCATTCGGAGTGTCTATGGAGGTTGGCAATTCTATATTCTGATTAGATTTTTGCAAATTACTACAAGGATCAGTGGTATATCCAATATCGCAACTATGGTTTCTTTAACCTGTATTTCCATTTTGATCTCTTTTGTTTCCTGTTTTGGTATAGTGCTTTGCAGTCGAGCTGAGAACGTCAGCAATTTTGTGGAGGCCGAGTCCATCTTTGGTCCTGTAAGATTTCCTTGTCCAACAATTTCCTTTAGTACCGTGTTTAGGATGTACTTGAATTGATGATTCTTTGAGAAGCTAGAAATTTGTCAAAAATGAATGTTGGTTGGCATTGTTCAACCAGTTGTAGTGCAATTATAGAGTGACCTAGCGTAGCTGATTAGTGGGACTGGCTAATGCTAATGAGTAATGAACCGTGGGGATTGACCTTTTCTGTCTGCTGCAGGATTCTCGTCTTGTATACAAGCACTTTGCCACCCTTTATTTCGTGCTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATACAAGGTACTTTCAAGATTATATGTGATGGATTAGTGACCACTAGAGTATTTTTATGCACGACCTTACTTGGACAGAGCTTTTCTATAAGTTGTACCACTGTTTCTTTGAGTTCTAAAGAGTATTTTTTATGCAAATATTATTTACATGCTTACAAGGCATCTATGAGGACTTTAGTACTCCTTGGTACCTCAAGTTTTAAACTGGATGGTATCTTGTTATGTTTCGGCATTCTTTAGTACATAATTAGCGGAAGTGCGAGGAATGATGAAACGTGTGGGCTTAAAATTCTCTTACTGAAAAGACCTGAATAAGTTACACAACTCAAAATAGAATTGAACCAAGTAGAAGTTGAATCATCAAAATTTCCTATTTGAATGCATTTCAATGTTAGATCTTCAGAAGTTTGTTGTTATGAACTTTTAGGTATGTACTGCAATTATATGATTAGTTTTGTTGTCTTATATTATTCCCTTAATTGATGGCATGATTAGGCCCTACTTTATCAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTTGACTTAGTGTTCAACTACAGCAAGGTCAGCTCTCTCTCTTGAACAACACATAAATGTACACGTGCGCACGCATGATACCAGAGTTTGAAACAAGTGATCTCTTTTGTTTCTATCGCAAGATAGTTTTTTAAAATCAAACAAACTTTTTTTTTAAGGAGAAAAAAGAAAAAAGAAACAATACTTTTTATTGATAAAATGAAAAGAAACTCTGCTTTAGCAGTCCCATTGGACCCCTTATCATGGATCATAATGATATTCTAAGATCACCCTTTTAAGGCAACAAAATGGATATGGTAGCATAATTTGAGCTATTCTTTGGAAAATTTGGGATGAGAGGAACTCAAGGATTTTTAAAGGAAAGGAAAGATGGCTAGAAGAAGTTCTGGATTCATCATTATTTAATTTTTTTCTAGTATTAAAATATTCAACCCTTCAATACTTTCAGATGCATACGATTTTGGATGAAATCATTTCTGGTGGGCAAGTGCTGGAGACTAGTTCCTCTGAAGTGATGAAGGCTGTTGAAGAAATATCCAAGTGCTCTCTCTCTCCCTCTATCTCTTATCCAAAAACTGTTGATTACTCTGTGTGCTTTAAGGATTTAATACAAATTCATGTCGTTGCATTCGCATTGCAGGTTAGAAACAGCCTCAAATTCTATCAACTTTGTCTCAAAAACAGTTTCTGGTTGGCGGGGTTGA

mRNA sequence

ATGATACGAGCGGTGATAGTGATGAATACTCAGGGCAAGCCTCGGTTTGCTAAATTCTACGATTTTCAGCCTGTAGAGAAGCAGCAGGAGCTCATTCGGAGTGTCTATGGAGTGCTTTGCAGTCGAGCTGAGAACGTCAGCAATTTTGTGGAGGCCGAGTCCATCTTTGGTCCTGATTCTCGTCTTGTATACAAGCACTTTGCCACCCTTTATTTCGTGCTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATACAAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTTGACTTAGTGTTCAACTACAGCAAGATGCATACGATTTTGGATGAAATCATTTCTGGTGGGCAAGTGCTGGAGACTAGTTCCTCTGAAGTGATGAAGGCTGTTGAAGAAATATCCAAGTTAGAAACAGCCTCAAATTCTATCAACTTTGTCTCAAAAACAGTTTCTGGTTGGCGGGGTTGA

Coding sequence (CDS)

ATGATACGAGCGGTGATAGTGATGAATACTCAGGGCAAGCCTCGGTTTGCTAAATTCTACGATTTTCAGCCTGTAGAGAAGCAGCAGGAGCTCATTCGGAGTGTCTATGGAGTGCTTTGCAGTCGAGCTGAGAACGTCAGCAATTTTGTGGAGGCCGAGTCCATCTTTGGTCCTGATTCTCGTCTTGTATACAAGCACTTTGCCACCCTTTATTTCGTGCTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATACAAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTTGACTTAGTGTTCAACTACAGCAAGATGCATACGATTTTGGATGAAATCATTTCTGGTGGGCAAGTGCTGGAGACTAGTTCCTCTGAAGTGATGAAGGCTGTTGAAGAAATATCCAAGTTAGAAACAGCCTCAAATTCTATCAACTTTGTCTCAAAAACAGTTTCTGGTTGGCGGGGTTGA

Protein sequence

MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDSRLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILDEIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG

Homology

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BLAST of CaUC07G130670 vs. NCBI nr
Match: XP_038893159.1 (AP-3 complex subunit sigma [Benincasa hispida] >XP_038893161.1 AP-3 complex subunit sigma [Benincasa hispida] >XP_038893162.1 AP-3 complex subunit sigma [Benincasa hispida] >XP_038893163.1 AP-3 complex subunit sigma [Benincasa hispida])

HSP 1 Score: 316.2 bits (809), Expect = 1.6e-82
Identity = 163/165 (98.79%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRFAKFY+FQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYNFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD
Sbjct: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EIISGGQVLETSSS VMKAVEEISKLETASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSSGVMKAVEEISKLETASNSINFVSKTVSGWRG 165

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BLAST of CaUC07G130670 vs. NCBI nr
Match: XP_008452384.1 (PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452386.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452387.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452388.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452389.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452390.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452391.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_016901330.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo])

HSP 1 Score: 313.2 bits (801), Expect = 1.4e-81
Identity = 159/165 (96.36%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIR+VIVMNT+GKPRFAKFYDFQP+EKQQELIRSVYGVLCSRAEN+SNFVEAESIFG DS
Sbjct: 1   MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMH+ILD
Sbjct: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHSILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]

BLAST of CaUC07G130670 vs. NCBI nr
Match: KAG6603975.1 (AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034147.1 AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 312.0 bits (798), Expect = 3.1e-81
Identity = 159/165 (96.36%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSV+GVLCSRAENVSNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           RLVYKHFATLYFV VFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNY+KMH+ILD
Sbjct: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYTKMHSILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EIISGGQVLETSS+EV+KAVEEISKLETASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]

BLAST of CaUC07G130670 vs. NCBI nr
Match: XP_011655957.1 (AP-3 complex subunit sigma [Cucumis sativus] >XP_031741534.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741535.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741536.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741537.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741538.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741539.1 AP-3 complex subunit sigma [Cucumis sativus] >KAE8648882.1 hypothetical protein Csa_008325 [Cucumis sativus])

HSP 1 Score: 310.8 bits (795), Expect = 6.9e-81
Identity = 159/165 (96.36%), Postives = 162/165 (98.18%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIR+VIVMNT+GKPRFAKFYDFQP+EKQQELIRSVYGVLCSRAENVSNFVE ESIFG DS
Sbjct: 1   MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
            LVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD
Sbjct: 61  HLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]

BLAST of CaUC07G130670 vs. NCBI nr
Match: XP_022978569.1 (AP-3 complex subunit sigma-like [Cucurbita maxima])

HSP 1 Score: 310.8 bits (795), Expect = 6.9e-81
Identity = 158/165 (95.76%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSV+GVLCSRAENVSNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           R+VYKHFATLYFV VFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNY+KMH+ILD
Sbjct: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYTKMHSILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EIISGGQVLETSS+EV+KAVEEISKLETASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTVSGWRG 165

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BLAST of CaUC07G130670 vs. ExPASy Swiss-Prot
Match: Q8VZ37 (AP-3 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At3g50860 PE=2 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 7.1e-73
Identity = 136/165 (82.42%), Postives = 151/165 (91.52%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MI+AV++MNTQGKPR AKFYD+ PVEKQQELIR V+ VLCSR ENVSNF+E ES+FGPDS
Sbjct: 1   MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           RLVYKH+ATLYFVLVF+ SENELAMLDLIQV VETLDKCF NVCELD+VFNYSKMH +LD
Sbjct: 61  RLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EI+ GGQVLETSS+EVMKAVEEISKLE ASNSI+ V K+VSGWRG
Sbjct: 121 EIVFGGQVLETSSAEVMKAVEEISKLEAASNSISLVPKSVSGWRG 165

[Close]

BLAST of CaUC07G130670 vs. ExPASy Swiss-Prot
Match: Q1JQA3 (AP-3 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.2e-39
Identity = 76/155 (49.03%), Postives = 113/155 (72.90%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GPD 60
           MI+A++V N  GKPR  +FY   P E QQ+++R  + ++  R +N+ NF+E  S+  G D
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61  SRLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTIL 120
            +L+Y+H+ATLYFV   +SSE+EL +LDLIQVFVETLDKCF+NVCELDL+F+  K+H IL
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120

Query: 121 DEIISGGQVLETSSSEVMKAVEEISKLETASNSIN 155
            E++ GG VLET+ +E++  +E  ++LE +   ++
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLS 155

[Close]

BLAST of CaUC07G130670 vs. ExPASy Swiss-Prot
Match: P59780 (AP-3 complex subunit sigma-2 OS=Homo sapiens OX=9606 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.2e-39
Identity = 76/155 (49.03%), Postives = 113/155 (72.90%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GPD 60
           MI+A++V N  GKPR  +FY   P E QQ+++R  + ++  R +N+ NF+E  S+  G D
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61  SRLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTIL 120
            +L+Y+H+ATLYFV   +SSE+EL +LDLIQVFVETLDKCF+NVCELDL+F+  K+H IL
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120

Query: 121 DEIISGGQVLETSSSEVMKAVEEISKLETASNSIN 155
            E++ GG VLET+ +E++  +E  ++LE +   ++
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLS 155

[Close]

BLAST of CaUC07G130670 vs. ExPASy Swiss-Prot
Match: Q8BSZ2 (AP-3 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap3s2 PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.2e-39
Identity = 76/155 (49.03%), Postives = 113/155 (72.90%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GPD 60
           MI+A++V N  GKPR  +FY   P E QQ+++R  + ++  R +N+ NF+E  S+  G D
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61  SRLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTIL 120
            +L+Y+H+ATLYFV   +SSE+EL +LDLIQVFVETLDKCF+NVCELDL+F+  K+H IL
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120

Query: 121 DEIISGGQVLETSSSEVMKAVEEISKLETASNSIN 155
            E++ GG VLET+ +E++  +E  ++LE +   ++
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLS 155

[Close]

BLAST of CaUC07G130670 vs. ExPASy Swiss-Prot
Match: Q5RDP9 (AP-3 complex subunit sigma-2 OS=Pongo abelii OX=9601 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.2e-39
Identity = 76/155 (49.03%), Postives = 113/155 (72.90%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GPD 60
           MI+A++V N  GKPR  +FY   P E QQ+++R  + ++  R +N+ NF+E  S+  G D
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61  SRLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTIL 120
            +L+Y+H+ATLYFV   +SSE+EL +LDLIQVFVETLDKCF+NVCELDL+F+  K+H IL
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120

Query: 121 DEIISGGQVLETSSSEVMKAVEEISKLETASNSIN 155
            E++ GG VLET+ +E++  +E  ++LE +   ++
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLS 155

[Close]

BLAST of CaUC07G130670 vs. ExPASy TrEMBL
Match: A0A1S3BT37 (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103493438 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 6.7e-82
Identity = 159/165 (96.36%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIR+VIVMNT+GKPRFAKFYDFQP+EKQQELIRSVYGVLCSRAEN+SNFVEAESIFG DS
Sbjct: 1   MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMH+ILD
Sbjct: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHSILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]

BLAST of CaUC07G130670 vs. ExPASy TrEMBL
Match: A0A6J1IUE1 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111478508 PE=3 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.3e-81
Identity = 158/165 (95.76%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSV+GVLCSRAENVSNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           R+VYKHFATLYFV VFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNY+KMH+ILD
Sbjct: 61  RVVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYTKMHSILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EIISGGQVLETSS+EV+KAVEEISKLETASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]

BLAST of CaUC07G130670 vs. ExPASy TrEMBL
Match: A0A6J1GFL2 (AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111453507 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.3e-80
Identity = 157/165 (95.15%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSV+GVLCSRAEN+SNFVEAESIFGPDS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENLSNFVEAESIFGPDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           RLVYKHFATLYFV VFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVF+Y+KMH+ILD
Sbjct: 61  RLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFHYTKMHSILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EIISGGQVLETSS+EV+KAVEEISKLETASNSINFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTVSGWRG 165

[Close]

BLAST of CaUC07G130670 vs. ExPASy TrEMBL
Match: A0A6J1E2P6 (AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111025475 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.8e-79
Identity = 157/165 (95.15%), Postives = 160/165 (96.97%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIRAVIVMNTQGKPRFAKFYDFQPVEKQQ+LIRSVYGVL SRAENVSNFVEAESIFG DS
Sbjct: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQDLIRSVYGVLSSRAENVSNFVEAESIFGXDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           RLVYKHFATLYFV VFN SENELAMLDLIQVFVETLDKCFKNVCELDLV+NYSKMHTILD
Sbjct: 61  RLVYKHFATLYFVFVFNGSENELAMLDLIQVFVETLDKCFKNVCELDLVYNYSKMHTILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EIISGGQVLETSSSEVMKAVEEISKLET SN+INFVSKTVSGWRG
Sbjct: 121 EIISGGQVLETSSSEVMKAVEEISKLETNSNAINFVSKTVSGWRG 165

[Close]

BLAST of CaUC07G130670 vs. ExPASy TrEMBL
Match: A0A5N6QKN8 (AP complex subunit sigma OS=Carpinus fangiana OX=176857 GN=FH972_004308 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 9.4e-76
Identity = 147/164 (89.63%), Postives = 159/164 (96.95%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIR+V+VMNTQGKPR AKFYDFQPVEKQQELIRSV+GVLCSRAENVSNF+EA+SIFGPDS
Sbjct: 1   MIRSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCSRAENVSNFLEADSIFGPDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           RLVYKH+ATLYFVLVF+SSENELAMLDLIQVFVETLDKCFKNVCELDLVFNY KMHTI+D
Sbjct: 61  RLVYKHYATLYFVLVFDSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYCKMHTIID 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWR 165
           EII GGQVLETSS+EVMKA+EEISKLETASNSI+ V K+VSGWR
Sbjct: 121 EIIFGGQVLETSSTEVMKAIEEISKLETASNSISLVPKSVSGWR 164

[Close]

BLAST of CaUC07G130670 vs. TAIR 10
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 274.6 bits (701), Expect = 5.1e-74
Identity = 136/165 (82.42%), Postives = 151/165 (91.52%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MI+AV++MNTQGKPR AKFYD+ PVEKQQELIR V+ VLCSR ENVSNF+E ES+FGPDS
Sbjct: 1   MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDS 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           RLVYKH+ATLYFVLVF+ SENELAMLDLIQV VETLDKCF NVCELD+VFNYSKMH +LD
Sbjct: 61  RLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 166
           EI+ GGQVLETSS+EVMKAVEEISKLE ASNSI+ V K+VSGWRG
Sbjct: 121 EIVFGGQVLETSSAEVMKAVEEISKLEAASNSISLVPKSVSGWRG 165

[Close]

BLAST of CaUC07G130670 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-23
Identity = 56/147 (38.10%), Postives = 93/147 (63.27%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MIR +++ N QGK R AK+Y      ++ ++   V+ ++ +R    +NFVE  +      
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRT-----H 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           +++Y+ +A L+F +  + ++NELA L+ I +FVE LD  F NVCELDLVFN+ K++ ILD
Sbjct: 61  KVIYRRYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKLE 148
           E I  G++ ETS   +++ + E+ KL+
Sbjct: 121 EFILAGELQETSKRAIIERMSELEKLQ 142

[Close]

BLAST of CaUC07G130670 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-22
Identity = 55/162 (33.95%), Postives = 99/162 (61.11%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MI  V++++ QGK R  K+Y     +++ ++IR + GV+ +R   + NF+E         
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGY----- 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           ++VYK +A+LYF +  + ++NEL +L++I  +VE LD+ F +VCELDL+FN+ K + ILD
Sbjct: 61  KVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKL-ETASNSINFVSKTVS 162
           E++  G++ E+S   V + +    +L E A    + +S  ++
Sbjct: 121 ELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIA 157

[Close]

BLAST of CaUC07G130670 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-22
Identity = 56/162 (34.57%), Postives = 98/162 (60.49%), Query Frame = 0


Query: 1   MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDS 60
           MI  V++++ QGK R  K+Y     +++ ++IR + GV+ +R   + NFVE         
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGY----- 60

Query: 61  RLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILD 120
           ++VYK +A+LYF +  +  +NEL +L++I  +VE LD+ F +VCELDL+FN+ K + ILD
Sbjct: 61  KVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILD 120

Query: 121 EIISGGQVLETSSSEVMKAVEEISKL-ETASNSINFVSKTVS 162
           E++  G++ E+S   V + +    +L E A    + +S  ++
Sbjct: 121 ELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIA 157

[Close]

BLAST of CaUC07G130670 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-21
Identity = 48/144 (33.33%), Postives = 94/144 (65.28%), Query Frame = 0


Query: 2   IRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDSR 61
           IR ++++N QG+ R A++Y++  +E+++ L   +     +R +   +FVE  +      +
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNY-----K 62

Query: 62  LVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYSKMHTILDE 121
           +VY+ +A+L+F++  +  ENELA+L+ I + VET+DK F NVCELD++F+  K H +L+E
Sbjct: 63  IVYRRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEE 122

Query: 122 IISGGQVLETSSSEVMKAVEEISK 146
           ++  G ++ETS + ++  ++ + K
Sbjct: 123 MVMNGCIVETSKANILSPIQLMDK 141

The following BLAST results are available for this feature:

BLAST of CaUC07G130670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893159.1	1.6e-82	98.79	AP-3 complex subunit sigma [Benincasa hispida] >XP_038893161.1 AP-3 complex subu...	[more]
XP_008452384.1	1.4e-81	96.36	PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452386.1 PREDICTED: ...	[more]
KAG6603975.1	3.1e-81	96.36	AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_011655957.1	6.9e-81	96.36	AP-3 complex subunit sigma [Cucumis sativus] >XP_031741534.1 AP-3 complex subuni...	[more]
XP_022978569.1	6.9e-81	95.76	AP-3 complex subunit sigma-like [Cucurbita maxima]	[more]

BLAST of CaUC07G130670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZ37	7.1e-73	82.42	AP-3 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At3g50860 PE=2 SV=...	[more]
Q1JQA3	5.2e-39	49.03	AP-3 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP3S2 PE=2 SV=1	[more]
P59780	5.2e-39	49.03	AP-3 complex subunit sigma-2 OS=Homo sapiens OX=9606 GN=AP3S2 PE=2 SV=1	[more]
Q8BSZ2	5.2e-39	49.03	AP-3 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap3s2 PE=1 SV=1	[more]
Q5RDP9	5.2e-39	49.03	AP-3 complex subunit sigma-2 OS=Pongo abelii OX=9601 GN=AP3S2 PE=2 SV=1	[more]

BLAST of CaUC07G130670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BT37	6.7e-82	96.36	AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103493438 PE=3 SV=1	[more]
A0A6J1IUE1	3.3e-81	95.76	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111478508 PE=3 SV=1	[more]
A0A6J1GFL2	1.3e-80	95.15	AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111453507 PE=3 SV=1	[more]
A0A6J1E2P6	1.8e-79	95.15	AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111025475 PE=3 SV=...	[more]
A0A5N6QKN8	9.4e-76	89.63	AP complex subunit sigma OS=Carpinus fangiana OX=176857 GN=FH972_004308 PE=3 SV=...	[more]

BLAST of CaUC07G130670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50860.1	5.1e-74	82.42	Clathrin adaptor complex small chain family protein	[more]
AT1G47830.1	1.8e-23	38.10	SNARE-like superfamily protein	[more]
AT2G17380.1	1.2e-22	33.95	associated protein 19	[more]
AT4G35410.2	1.2e-22	34.57	Clathrin adaptor complex small chain family protein	[more]
AT2G19790.1	1.0e-21	33.33	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.450.60		coord: 1..160 e-value: 1.8E-60 score: 205.3
None	No IPR available	PANTHER	PTHR11753:SF42	AP COMPLEX SUBUNIT SIGMA	coord: 1..157
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 1..146 e-value: 6.0E-49 score: 165.6
IPR016635	Adaptor protein complex, sigma subunit	PIRSF	PIRSF015588	AP_complex_sigma	coord: 1..157 e-value: 5.2E-56 score: 186.7
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 1..157
IPR000804	Clathrin adaptor complex, small chain	PROSITE	PS00989	CLAT_ADAPTOR_S	coord: 62..72
IPR027155	AP-3 complex subunit sigma	CDD	cd14834	AP3_sigma	coord: 1..145 e-value: 3.37416E-87 score: 249.837
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC07G130670.1	CaUC07G130670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006896	Golgi to vacuole transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0015031	protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030123	AP-3 adaptor complex
cellular_component	GO:0030659	cytoplasmic vesicle membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0030117	membrane coat