CaUC07G128680 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC07G128680
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionReverse transcriptase domain-containing protein
LocationCiama_Chr07: 4431198 .. 4431485 (-)
RNA-Seq ExpressionCaUC07G128680
SyntenyCaUC07G128680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATCCTCAGTTGGAATGCCCGGGGTGTTGGTAACCCTAAGGCATTCCGGGCATTGTCTGACCTTCTAAGGATCAGGCGTCCTGCGATTGTGTTTCTATCTGAGACAAAGTGTGGTGAAGAGACTACGGATAGAATCAAGAGAAATGGGAATTTCCTTGAATGCTTTGCGGTTAAAAGCATTGGTTCAAAAGGTGGCCTGTGTCTACTTTGGAAAGCTAAGGTCGATTTGAGAGTAATCAAATCAATGGAGATTTACTGGCATATATGGTTTCCCGCAAGGTGA

mRNA sequence

ATGAAAATCCTCAGTTGGAATGCCCGGGGTGTTGGTAACCCTAAGGCATTCCGGGCATTGTCTGACCTTCTAAGGATCAGGCGTCCTGCGATTGTGTTTCTATCTGAGACAAAGTGTGGTGAAGAGACTACGGATAGAATCAAGAGAAATGGGAATTTCCTTGAATGCTTTGCGGTTAAAAGCATTGGTTCAAAAGGTGGCCTGTGTCTACTTTGGAAAGCTAAGGTCGATTTGAGAGTAATCAAATCAATGGAGATTTACTGGCATATATGGTTTCCCGCAAGGTGA

Coding sequence (CDS)

ATGAAAATCCTCAGTTGGAATGCCCGGGGTGTTGGTAACCCTAAGGCATTCCGGGCATTGTCTGACCTTCTAAGGATCAGGCGTCCTGCGATTGTGTTTCTATCTGAGACAAAGTGTGGTGAAGAGACTACGGATAGAATCAAGAGAAATGGGAATTTCCTTGAATGCTTTGCGGTTAAAAGCATTGGTTCAAAAGGTGGCCTGTGTCTACTTTGGAAAGCTAAGGTCGATTTGAGAGTAATCAAATCAATGGAGATTTACTGGCATATATGGTTTCCCGCAAGGTGA

Protein sequence

MKILSWNARGVGNPKAFRALSDLLRIRRPAIVFLSETKCGEETTDRIKRNGNFLECFAVKSIGSKGGLCLLWKAKVDLRVIKSMEIYWHIWFPAR
Homology
BLAST of CaUC07G128680 vs. NCBI nr
Match: XP_042964610.1 (uncharacterized protein LOC122298825 [Carya illinoinensis])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 38/90 (42.22%), Postives = 59/90 (65.56%), Query Frame = 0

Query: 1  MKILSWNARGVGNPKAFRALSDLLRIRRPAIVFLSETKCGEETTDRIKRNGNFLECFAVK 60
          M +LSWN RG+GNP+A R L+ L++ + P++VFL ETKC +   + +K+   F  C  V 
Sbjct: 1  MNLLSWNCRGLGNPRAVRILNMLIKAKLPSLVFLLETKCSKSKVEAVKQLIKFDNCLVVD 60

Query: 61 SIGSKGGLCLLWKAKVDLRVIKSMEIYWHI 91
          S+GS GGL ++WK  +++++I      WHI
Sbjct: 61 SVGSSGGLAMMWKNSLEVQLINFTR--WHI 88

BLAST of CaUC07G128680 vs. NCBI nr
Match: XP_042950087.1 (uncharacterized protein LOC122282202 [Carya illinoinensis])

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-14
Identity = 42/89 (47.19%), Postives = 53/89 (59.55%), Query Frame = 0

Query: 1  MKILSWNARGVGNPKAFRALSDLLRIRRPAIVFLSETKCGEETTDRIKRNGNFLECFAVK 60
          MKILSWN RG+GNP++ R+L DLL    P I+FL ETK      +  K    F  CF V 
Sbjct: 1  MKILSWNLRGLGNPRSIRSLHDLLTSEVPEILFLQETKLSSRRLEFCKLRLGFRCCFGVD 60

Query: 61 SIGSKGGLCLLWKAKVDLRVIKSMEIYWH 90
          S+G  GGL L WK  ++LR+I    I+ H
Sbjct: 61 SVGRSGGLALFWKEDINLRIISYSRIHIH 89

BLAST of CaUC07G128680 vs. NCBI nr
Match: XP_024039545.1 (uncharacterized protein LOC112098147 [Citrus clementina])

HSP 1 Score: 87.4 bits (215), Expect = 7.1e-14
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 1  MKILSWNARGVGNPKAFRALSDLLRIRRPAIVFLSETKCGEETTDRIKRNGNFLECFAVK 60
          MKILSWN RG+GNP+ + AL  +L++  P +VFL ETK      + + R  N+  CFAV 
Sbjct: 1  MKILSWNIRGLGNPRMYLALKKILQVHSPHLVFLCETKLKTMHMNEVSRKLNYENCFAVS 60

Query: 61 SIGSKGGLCLLWKAKVDLRV 81
          SIG  GGL LLWK++ ++++
Sbjct: 61 SIGKGGGLALLWKSETNVQI 80

BLAST of CaUC07G128680 vs. NCBI nr
Match: XP_042962672.1 (uncharacterized protein LOC122296942 [Carya illinoinensis])

HSP 1 Score: 87.0 bits (214), Expect = 9.3e-14
Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 0

Query: 1  MKILSWNARGVGNPKAFRALSDLLRIRRPAIVFLSETKCGEETTDRIKRNGNFLECFAVK 60
          MK+LSWN RG+GNP++ R+L DLL    P I+FL ETK      +  K    F  CF V 
Sbjct: 1  MKLLSWNLRGLGNPRSIRSLRDLLTSEVPEILFLQETKLSSRRLEFCKLRLGFRCCFGVD 60

Query: 61 SIGSKGGLCLLWKAKVDLRVIKSMEIYWH 90
          S+G  GGL LLWK  ++LR+I     + H
Sbjct: 61 SVGRSGGLALLWKDDINLRIINYSSHHIH 89

BLAST of CaUC07G128680 vs. NCBI nr
Match: XP_042952137.1 (uncharacterized protein LOC122289225 [Carya illinoinensis])

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 37/90 (41.11%), Postives = 58/90 (64.44%), Query Frame = 0

Query: 1  MKILSWNARGVGNPKAFRALSDLLRIRRPAIVFLSETKCGEETTDRIKRNGNFLECFAVK 60
          M +LSWN RG+GNP+A R L+ +++ + P++VFL ETKC     + +K    F  C AV 
Sbjct: 1  MNLLSWNCRGLGNPQAVRILNMIIKEKFPSLVFLVETKCSRSRIESVKHLTKFDYCLAVD 60

Query: 61 SIGSKGGLCLLWKAKVDLRVIKSMEIYWHI 91
          S+GS GGL ++WK  ++++++      WHI
Sbjct: 61 SMGSSGGLAMMWKNNLEVQLVSFTR--WHI 88

BLAST of CaUC07G128680 vs. ExPASy TrEMBL
Match: A0A5B6VAU9 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_001361 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-13
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 1  MKILSWNARGVGNPKAFRALSDLLRIRRPAIVFLSETKCGEETTDRIKRNGNFLECFAVK 60
          MKIL WN R +GNP+  R L ++L++ +P +VF  ETK  +   + +KR  +F+    V 
Sbjct: 1  MKILCWNIRSLGNPRVMRTLQNVLKLYKPQLVFFMETKINKNKMESVKRRYSFINGIKVG 60

Query: 61 SIGSKGGLCLLWKAKVDLRVIKSMEI 87
          + GSKGGLCL+WK +VD+ +++S  I
Sbjct: 61 AEGSKGGLCLVWKDEVDI-ILQSFSI 85

BLAST of CaUC07G128680 vs. ExPASy TrEMBL
Match: A0A2I4EA22 (uncharacterized protein LOC108987722 OS=Juglans regia OX=51240 GN=LOC108987722 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.8e-13
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 0

Query: 1  MKILSWNARGVGNPKAFRALSDLLRIRRPAIVFLSETKCGEETTDRIKRNGNFLECFAVK 60
          MKI SWNARG+GNP+  R L DL++   P ++FL ET+      +  K    F  C A+ 
Sbjct: 1  MKICSWNARGLGNPRGIRTLCDLIQRELPDVLFLQETRLSTREVESCKYKLGFQNCLAIS 60

Query: 61 SIGSKGGLCLLWKAKVDLRVI 82
          S G KGG+ LLW  ++DL VI
Sbjct: 61 SDGRKGGIALLWDVEIDLSVI 81

BLAST of CaUC07G128680 vs. ExPASy TrEMBL
Match: A0A5B6VDB0 (BEACH domain-containing lvsC OS=Gossypium australe OX=47621 GN=EPI10_002129 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.5e-13
Identity = 34/88 (38.64%), Postives = 59/88 (67.05%), Query Frame = 0

Query: 3   ILSWNARGVGNPKAFRALSDLLRIRRPAIVFLSETKCGEETTDRIKRNGNFLECFAVKSI 62
           ILSWN RG+G+P+A R L  L++ + P +VFL ET+  ++  ++++++   L C  V++ 
Sbjct: 328 ILSWNVRGLGSPRAVRRLRHLIKEQNPRLVFLMETELDKKRMEKVRKSCGLLNCIEVEAE 387

Query: 63  GSKGGLCLLWKAKVDLRVIKSMEIYWHI 91
           G++GGLCL WK  +D+R+    +  WH+
Sbjct: 388 GTRGGLCLAWKDGIDVRLRSFSK--WHL 413

BLAST of CaUC07G128680 vs. ExPASy TrEMBL
Match: A0A2N9F8Y2 (Endo/exonuclease/phosphatase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11116 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = 0

Query: 1  MKILSWNARGVGNPKAFRALSDLLRIRRPAIVFLSETKCGEETTDRIKRNGNFLECFAVK 60
          M++LSWN +G G   A RAL  L+    P IVFLSETK   +  ++I+ + NF++CF V+
Sbjct: 1  MRLLSWNCQGAGKAPAVRALKALVCENSPDIVFLSETKSDVKKIEKIRLSLNFVDCFCVE 60

Query: 61 SIGSKGGLCLLWKAKVDLRVIKS 84
          + G  GGL L W+  VDL V+ S
Sbjct: 61 AFGKAGGLALFWRKGVDLEVVYS 83

BLAST of CaUC07G128680 vs. ExPASy TrEMBL
Match: A0A2N9F8N4 (F-box domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11121 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = 0

Query: 1  MKILSWNARGVGNPKAFRALSDLLRIRRPAIVFLSETKCGEETTDRIKRNGNFLECFAVK 60
          M++LSWN +G G   A RAL  L+    P IVFLSETK   +  ++I+ + NF++CF V+
Sbjct: 1  MRLLSWNCQGAGKVPAVRALKALVCENSPDIVFLSETKSDLKKIEKIRLSLNFVDCFCVE 60

Query: 61 SIGSKGGLCLLWKAKVDLRVIKS 84
          + G  GGL L W+  VDL V+ S
Sbjct: 61 AFGKAGGLALFWRKGVDLEVVYS 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_042964610.11.4e-1442.22uncharacterized protein LOC122298825 [Carya illinoinensis][more]
XP_042950087.11.9e-1447.19uncharacterized protein LOC122282202 [Carya illinoinensis][more]
XP_024039545.17.1e-1447.50uncharacterized protein LOC112098147 [Citrus clementina][more]
XP_042962672.19.3e-1446.07uncharacterized protein LOC122296942 [Carya illinoinensis][more]
XP_042952137.11.2e-1341.11uncharacterized protein LOC122289225 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5B6VAU92.2e-1343.02Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_001361 PE=4 SV=1[more]
A0A2I4EA223.8e-1345.68uncharacterized protein LOC108987722 OS=Juglans regia OX=51240 GN=LOC108987722 P... [more]
A0A5B6VDB08.5e-1338.64BEACH domain-containing lvsC OS=Gossypium australe OX=47621 GN=EPI10_002129 PE=4... [more]
A0A2N9F8Y21.1e-1245.78Endo/exonuclease/phosphatase domain-containing protein OS=Fagus sylvatica OX=289... [more]
A0A2N9F8N41.9e-1245.78F-box domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11121 PE... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 1..92
e-value: 1.3E-11
score: 46.7
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC07G128680.1CaUC07G128680.1mRNA