CaUC07G128140 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC07G128140
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr07: 3606093 .. 3606424 (-)
RNA-Seq ExpressionCaUC07G128140
SyntenyCaUC07G128140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAGCAAAATATAAGGCTGCTAGTTCTTGGTTTCCTCTTTTTGGGCCTCTTCGTATCTTGTCAATGTGTTCATTTGCATGGCTTCATAATTCAAGCGGCTGAATCCAGAGAAGTGAAATTGGGGAGAAGATTCATGTTTGACGACACAGTGAGTCGATTCTTTCAGCGTTTTTTTACATTGAATTCTCGTCAAAATCTTGTTGTTTTTCTTACGAATTGAATTTGTTCTTGATGAAGAGGAAAGAAGAGGTGAGAGGGAGAAGTCAGAAGAATCCTTCAGGGCCGAACCCTATTGGGAATCGACACCCACCGTCAATCCATGGCTGA

mRNA sequence

ATGGCAGAGCAAAATATAAGGCTGCTAGTTCTTGGTTTCCTCTTTTTGGGCCTCTTCGTATCTTGTCAATGTGTTCATTTGCATGGCTTCATAATTCAAGCGGCTGAATCCAGAGAAGTGAAATTGGGGAGAAGATTCATGTTTGACGACACAAGGAAAGAAGAGGTGAGAGGGAGAAGTCAGAAGAATCCTTCAGGGCCGAACCCTATTGGGAATCGACACCCACCGTCAATCCATGGCTGA

Coding sequence (CDS)

ATGGCAGAGCAAAATATAAGGCTGCTAGTTCTTGGTTTCCTCTTTTTGGGCCTCTTCGTATCTTGTCAATGTGTTCATTTGCATGGCTTCATAATTCAAGCGGCTGAATCCAGAGAAGTGAAATTGGGGAGAAGATTCATGTTTGACGACACAAGGAAAGAAGAGGTGAGAGGGAGAAGTCAGAAGAATCCTTCAGGGCCGAACCCTATTGGGAATCGACACCCACCGTCAATCCATGGCTGA

Protein sequence

MAEQNIRLLVLGFLFLGLFVSCQCVHLHGFIIQAAESREVKLGRRFMFDDTRKEEVRGRSQKNPSGPNPIGNRHPPSIHG
Homology
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BLAST of CaUC07G128140 vs. NCBI nr
Match: KAG6600053.1 (hypothetical protein SDJN03_05286, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.6 bits (231), Expect = 8.3e-16
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 0 

Query: 1  MAEQNIRLLVLGFLFLGLFVSCQCVHLHGFI--IQAAESREVKLGRRFMFDDTRK--EEV 60
          M EQN R LVL +L  GL +S QCVH  GF+   ++AESR+ + GR+FMF DT K  E+V
Sbjct: 5  MTEQN-RTLVLAYLLFGLLISSQCVHSIGFVNHFESAESRQAQPGRKFMFVDTMKGREQV 64

Query: 61 RGRSQKNPSGPNPIGNRHPPSIHG 81
          R   +KNPSGPNPIGNRHPPSI G
Sbjct: 65 RASGRKNPSGPNPIGNRHPPSIQG 87

The following BLAST results are available for this feature:
BLAST of CaUC07G128140 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600053.18.3e-1660.71hypothetical protein SDJN03_05286, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CaUC07G128140 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC07G128140 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC07G128140 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..80
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..22
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC07G128140.1CaUC07G128140.1mRNA