CaUC07G126760 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC07G126760
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	U6 snRNA-associated Sm-like protein LSm5
Location	Ciama_Chr07: 2023901 .. 2027278 (-)
RNA-Seq Expression	CaUC07G126760
Synteny	CaUC07G126760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAACAATCCTTCGCAGCTTCTACCGTCGGGTTCGCTTCTGTTTCTCCTTCGCTTTATTTCTCATTCCCATCCTATTTCGCTGGAAATGAACTCTTATTTACTGGGTTTCTTCGTGGGAATTTGCAGAGTTAATCGATCGATGTATAGGGTCTAAAATATGGGTCATTATGAAGGGCGACAAAGAGCTTGTTGGCACTCTCAGAGGATTCGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATAGTAAGGGCCTCTACAAGATCTAAACTCATTTTTCTTTGGTTTGCTCATGTGGGTTGTATATGTTTTGTATTTTGCGTATTTTTTTTGTTTCAGTGTCTTCTGTTTGTTCACTTTCTTTTACAAAGTGTTTGATGTGTCTATTTAGCGTTGGAAAATTTGAGGTGAATTGAAGAAAATATTAGGCTTAATGCTGTATTTGTCTGTGTTTAGGGGATTGAAAACATGATTTGAGGGGGGGAGAAAGCTGCGCTAGAGCAATTTGAATTATTGTGTATGCAATTTCATTGAATCCCTTCTGTTCTTCTCCAATCTTAGGATTGGGGTTGGAGGTTGGCTTTGGAGAGTTTTTGTGTTAAGGTTTTGAAACCCTTTGTTCAAATTTTCAAAGGGAACTGGGTAGTGGATGTTTCTTCAGAAGTTGAAGAAAGTGATTGATAATCTCATGCCTTGTTGAAATTGAAGGAAAAGAGTTAATAAGAAAGGAGGATTACGTTATCCATGCCCCGTTTGTGCTGAGATTTTGTGGATGAAGTTGTTTAATTTGATGGGGGTATAAAATAGAGTAATTGAGGAGAGAGGGTTACCATATGCTTGTGCTGTTTTCCCAAAGTCTCTCATAACGTTGAAGGTAAATGTTGGTTTAAGTGCTCAGGAAGTGCTTTGTCCTTGTTGATAAAGTCCTTTTTTTAACATATATATATTTTTCTTTCTACTCCTTATTCTCAACAAATTGGGGGCTGTTAATTGGTACTTTTTGGACAAGGTTCTCATGACGAACAACCTATGGTATAGGTGGAGGGCTTGGGTCTGGAGTAACATTAGAACGGTGGAGTATTCTATTCTCATCATTGGTAGGCCCCGAAGAGGATTTGAGTCATGTTATTTGGGTAGTGCATAAAAGGCTTGCTAACTGGAAGAAAACCTTCAAGGGTGGAAGATTGATCCTTATTAGCTTAGTCTTGTATAGAACTCCTATATATTTCTTTTCCCTTTTTAGACCCCATTGTTCTGTTTGATGCTAGAGAAGCTTATGAGGGATTTTCTGTAACAAGAGGCTGATGAGGGGCAAAGAATGCACTGTGTGAGTTGGCAGACAGTGGGGAAGTTGGTGAATCTTTGGGGGTTAGAGTTGGGTAATTTGAGGGCTCATAACCAAGCCTTGCTAGACAAAGGCTCTGGCGGCTCCCTTACTCTTTGGTATAGGATTATAGTGAGTCAACATGGTCCTCATTCGTTTGAGTGTGTGTTAGGTGTGGACAAAGGCACTTACAAAAATCCTTGGAAATACATTTCTAGTGAGCTCCCTTCTTTCTCTTTCTTGGTTAAGAGCTTTGTGGGTGATGGAAGGGATACTTATTTTTGGGAGTATGAATGGGTAGGGATTGCCTGCTTTGCTCTTCGTTTATTTGTTTATATCATTTATCCTCCATGACAAATTGCTCAATGGTTGAAGTCCTTGTTGCACCTGGGAGCTTTCTCTTTTTATTGCTTGGTTTTTGGAACAGGAAAACAATGGACATCTTGGCTCTCTTATCTTTGATTGTGGAGGTTGTCCACAGGCCAAAGAGAGGGAATTTTTGTTTTTGGAGTGCCAAGTCATAATGCCATTGGGGGGTTTTTCTAGTAGCTCACTTTTTAGTACTTGTTGAGTCCTTCTCCAACTAGTGAGTATGTTTTCTTGTTCCTTTGGAAGGTGAAAATCCCAACGAAGATTCATTTCTTTGTGTGGCAAGTCATCCACATAAGGTTAGCACTTTAGATCGGCTCGTGAGAATTATAAATATGTCTACTTTGGTTTGGCCCTTTTGTTGCCTTCATTGTTGGAGGCCGAAAGAAGATCTTGATCATATTCTTTGGAGTAGCAATTTTTCTTAGTCTGTCTGAAAACTCTTTTTTTGACATGTTTGACTTTCATCGCGACAAGAATGTTACAAGGAGATGATTGAGGAGTTCCTTCTTCATGCTAGAAGAGGAGTTTTTGTGGCAAGTAGAGGTTTGTGTTGTGTTGTGGGGTTTATGGGAGAGTAACAATAGGACCTTTAGAGAGGTCGAGAAGCACCCTAGTGACATTTAGGCCCTTGTCAGGTTTTATGTTTCTCTTTGGATGTCAGTGATATGGCTTTTTGTATTTACTCGAGGTCTGGGACATTTGATGTTTATTGTGCTGTATCTTTTCCTTTTCTAGTTGCGGAGCTAGCTGATTATTGCTTGATTTTCTCTTCTGTGGTCTGGTTATGAATATATGTGAGAAATTCAAACTTCATGACAGATTGGTAAGGTCATAGTTCGGCAAGTTTAGAATATAATGATCACGATGTTTCAATCAACCCATCATTAGGACTTTTCTCTTATCTTTCATGTGATGCAGCCCTAATTTTTCTTATTAAATATGTGAGTTGAATTGAATTACCAATACCTCCTGACAACAGGAGTAATGCTTTGGTATGCTTACTAGAGTAATACGAAACTTTGTTACATCGTCTTTGATTGTGGTCTTAGATTGATCCTTCTCTTTTTCTTAATTTACTCACCATTCAAGCTTTTTATAGAACTTTTTTCAGCTCATTTCTGTTGTTCAGTACTGGGTTAACTGTTTCATTCTATCACGGGGTGGTTCCATAAAGCCTACAGTTAAATTACTATTAACAAACACACGATCCATTCGGGGAGAGTACTTGTAGATGGAGCTAATATCTCCAATGAGAACTTTTGTTTCTGTGCTACCAATCAAAATATAATGTTGTTCTATTGAGCCTGAATTTCCTGTCTTGGCACGTCTTTTCTCCCCTTTCTTTTGTATCGCTCTTTGTGGTAATGAAAGTTATGTTTCTTATTAAAAATAAAAAATAAAAAAATGCACATGGCGTTCACTGAGTTGCTGTCTCTTTATGAACCCATTGACTCTTTGTTGTAATCAAAACGCAATCTACCATATAGTTTAACTCTTTCTCTATCTTACATTGTAGTGAGATCACTGCTGAGGGGAGACGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTGTAAGTGACAATCACAGTTTTAATGTTTACATGCCCTTGTTTAAGGGAAGCCATGAGTCCGTGGATGATTTCCTAGACCAATGA

mRNA sequence

ATGGCTAACAATCCTTCGCAGCTTCTACCGTCGGAGTTAATCGATCGATGTATAGGGTCTAAAATATGGGTCATTATGAAGGGCGACAAAGAGCTTGTTGGCACTCTCAGAGGATTCGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATATGAGATCACTGCTGAGGGGAGACGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTGTAAGTGACAATCACAGTTTTAATGTTTACATGCCCTTGTTTAAGGGAAGCCATGAGTCCGTGGATGATTTCCTAGACCAATGA

Coding sequence (CDS)

ATGGCTAACAATCCTTCGCAGCTTCTACCGTCGGAGTTAATCGATCGATGTATAGGGTCTAAAATATGGGTCATTATGAAGGGCGACAAAGAGCTTGTTGGCACTCTCAGAGGATTCGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATATGAGATCACTGCTGAGGGGAGACGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTGTAAGTGACAATCACAGTTTTAATGTTTACATGCCCTTGTTTAAGGGAAGCCATGAGTCCGTGGATGATTTCCTAGACCAATGA

Protein sequence

MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVSDNHSFNVYMPLFKGSHESVDDFLDQ

Homology

[Close]

BLAST of CaUC07G126760 vs. NCBI nr
Match: KAG6517311.1 (hypothetical protein ZIOFF_020696 [Zingiber officinale])

HSP 1 Score: 162.5 bits (410), Expect = 1.9e-36
Identity = 81/95 (85.26%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT+EGR
Sbjct: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGR 60

Query: 61 RITKLDQILLNGNNIAIVSDNHSFNVYMPLFKGSH 96
          RITKLDQILLNGNNIAIVS++H   + + L   SH
Sbjct: 61 RITKLDQILLNGNNIAIVSEHHCLMLQL-LLTSSH 94

[Close]

BLAST of CaUC07G126760 vs. NCBI nr
Match: KYP49644.1 (U6 snRNA-associated Sm-like protein LSm5 [Cajanus cajan])

HSP 1 Score: 160.6 bits (405), Expect = 7.2e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIVS 80
          RITKLDQILLNGNNIAIVS
Sbjct: 61 RITKLDQILLNGNNIAIVS 79

[Close]

BLAST of CaUC07G126760 vs. NCBI nr
Match: PON51961.1 (LSM domain/archaea-type [Parasponia andersonii])

HSP 1 Score: 160.6 bits (405), Expect = 7.2e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIVS 80
          RITKLDQILLNGNNIAIVS
Sbjct: 61 RITKLDQILLNGNNIAIVS 79

[Close]

BLAST of CaUC07G126760 vs. NCBI nr
Match: KAG6717542.1 (hypothetical protein I3842_04G105700 [Carya illinoinensis])

HSP 1 Score: 159.5 bits (402), Expect = 1.6e-35
Identity = 80/91 (87.91%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 2  ANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRR 61
          ANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRR
Sbjct: 3  ANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRR 62

Query: 62 ITKLDQILLNGNNIAIVSDNHSFNVYMPLFK 93
          ITKLDQILLNGNNIAIVS    F  ++ + K
Sbjct: 63 ITKLDQILLNGNNIAIVSATLFFIPFLAINK 93

[Close]

BLAST of CaUC07G126760 vs. NCBI nr
Match: QCD83904.1 (U6 snRNA-associated Sm-like protein LSm5 [Vigna unguiculata])

HSP 1 Score: 157.9 bits (398), Expect = 4.7e-35
Identity = 76/79 (96.20%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT+EGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGR 60

Query: 61 RITKLDQILLNGNNIAIVS 80
          RITKLDQILLNGNNIAI++
Sbjct: 61 RITKLDQILLNGNNIAIIN 79

[Close]

BLAST of CaUC07G126760 vs. ExPASy Swiss-Prot
Match: Q9FKB0 (Sm-like protein LSM5 OS=Arabidopsis thaliana OX=3702 GN=LSM5 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 8.9e-37
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          R+TKLDQILLNGNNIAI+
Sbjct: 61 RVTKLDQILLNGNNIAIL 78

[Close]

BLAST of CaUC07G126760 vs. ExPASy Swiss-Prot
Match: Q2HJH0 (U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus OX=9913 GN=LSM5 PE=3 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 5.8e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAIV 79
          KLDQILLNGNNI ++
Sbjct: 68 KLDQILLNGNNITML 82

[Close]

BLAST of CaUC07G126760 vs. ExPASy Swiss-Prot
Match: Q9Y4Y9 (U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens OX=9606 GN=LSM5 PE=1 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 5.8e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAIV 79
          KLDQILLNGNNI ++
Sbjct: 68 KLDQILLNGNNITML 82

[Close]

BLAST of CaUC07G126760 vs. ExPASy Swiss-Prot
Match: P62322 (U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus OX=10090 GN=Lsm5 PE=3 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 5.8e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAIV 79
          KLDQILLNGNNI ++
Sbjct: 68 KLDQILLNGNNITML 82

[Close]

BLAST of CaUC07G126760 vs. ExPASy Swiss-Prot
Match: Q5R628 (U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii OX=9601 GN=LSM5 PE=3 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 5.8e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAIV 79
          KLDQILLNGNNI ++
Sbjct: 68 KLDQILLNGNNITML 82

[Close]

BLAST of CaUC07G126760 vs. ExPASy TrEMBL
Match: A0A151S4E6 (U6 snRNA-associated Sm-like protein LSm5 OS=Cajanus cajan OX=3821 GN=LSM5 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.5e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIVS 80
          RITKLDQILLNGNNIAIVS
Sbjct: 61 RITKLDQILLNGNNIAIVS 79

[Close]

BLAST of CaUC07G126760 vs. ExPASy TrEMBL
Match: A0A2P5BT44 (U6 snRNA-associated Sm-like protein LSm5 OS=Parasponia andersonii OX=3476 GN=LSM5 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.5e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIVS 80
          RITKLDQILLNGNNIAIVS
Sbjct: 61 RITKLDQILLNGNNIAIVS 79

[Close]

BLAST of CaUC07G126760 vs. ExPASy TrEMBL
Match: A0A0B0NQ45 (U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium arboreum OX=29729 GN=LOC108488428 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.3e-35
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          RITKLDQILLNGNNIAI+
Sbjct: 61 RITKLDQILLNGNNIAIL 78

[Close]

BLAST of CaUC07G126760 vs. ExPASy TrEMBL
Match: A0A2P5WT65 (U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium barbadense OX=3634 GN=LSM5 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.3e-35
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          RITKLDQILLNGNNIAI+
Sbjct: 61 RITKLDQILLNGNNIAIL 78

[Close]

BLAST of CaUC07G126760 vs. ExPASy TrEMBL
Match: A0A0B2RAJ5 (U6 snRNA-associated Sm-like protein LSm5 OS=Glycine soja OX=3848 GN=LSM5 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.3e-35
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          RITKLDQILLNGNNIAI+
Sbjct: 61 RITKLDQILLNGNNIAIL 78

[Close]

BLAST of CaUC07G126760 vs. TAIR 10
Match: AT5G48870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 154.1 bits (388), Expect = 6.3e-38
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          R+TKLDQILLNGNNIAI+
Sbjct: 61 RVTKLDQILLNGNNIAIL 78

[Close]

BLAST of CaUC07G126760 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 47.4 bits (111), Expect = 8.3e-06
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKL 69
          P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I  + R+   L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKKTRK--PL 72

Query: 70 DQILLNGNNIAIV 79
           +ILL G+NI ++
Sbjct: 73 GRILLKGDNITLM 83

[Close]

BLAST of CaUC07G126760 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 27/73 (36.99%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKL 69
          P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I    R+   L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRK--PL 72

Query: 70 DQILLNGNNIAIV 79
           +ILL G+NI ++
Sbjct: 73 GRILLKGDNITLM 83

[Close]

BLAST of CaUC07G126760 vs. TAIR 10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 44.3 bits (103), Expect = 7.0e-05
Identity = 21/76 (27.63%), Postives = 39/76 (51.32%), Query Frame = 0


Query: 5  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITK 64
          P ++  S  +   +  K+ V+++  ++L+GTLR FD + N VLE   E  I  E      
Sbjct: 6  PEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIP 65

Query: 65 LDQILLNGNNIAIVSD 81
          L   ++ G N+ ++ +
Sbjct: 66 LGLYVIRGENVVLIGE 81

[Close]

BLAST of CaUC07G126760 vs. TAIR 10
Match: AT3G14080.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 44.3 bits (103), Expect = 7.0e-05
Identity = 21/76 (27.63%), Postives = 39/76 (51.32%), Query Frame = 0


Query: 5  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITK 64
          P ++  S  +   +  K+ V+++  ++L+GTLR FD + N VLE   E  I  E      
Sbjct: 6  PEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIP 65

Query: 65 LDQILLNGNNIAIVSD 81
          L   ++ G N+ ++ +
Sbjct: 66 LGLYVIRGENVVLIGE 81

The following BLAST results are available for this feature:

BLAST of CaUC07G126760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6517311.1	1.9e-36	85.26	hypothetical protein ZIOFF_020696 [Zingiber officinale]	[more]
KYP49644.1	7.2e-36	100.00	U6 snRNA-associated Sm-like protein LSm5 [Cajanus cajan]	[more]
PON51961.1	7.2e-36	100.00	LSM domain/archaea-type [Parasponia andersonii]	[more]
KAG6717542.1	1.6e-35	87.91	hypothetical protein I3842_04G105700 [Carya illinoinensis]	[more]
QCD83904.1	4.7e-35	96.20	U6 snRNA-associated Sm-like protein LSm5 [Vigna unguiculata]	[more]

BLAST of CaUC07G126760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKB0	8.9e-37	94.87	Sm-like protein LSM5 OS=Arabidopsis thaliana OX=3702 GN=LSM5 PE=1 SV=1	[more]
Q2HJH0	5.8e-28	77.33	U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus OX=9913 GN=LSM5 PE=3 SV=3	[more]
Q9Y4Y9	5.8e-28	77.33	U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens OX=9606 GN=LSM5 PE=1 SV...	[more]
P62322	5.8e-28	77.33	U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus OX=10090 GN=Lsm5 PE=3 S...	[more]
Q5R628	5.8e-28	77.33	U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii OX=9601 GN=LSM5 PE=3 SV...	[more]

BLAST of CaUC07G126760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A151S4E6	3.5e-36	100.00	U6 snRNA-associated Sm-like protein LSm5 OS=Cajanus cajan OX=3821 GN=LSM5 PE=3 S...	[more]
A0A2P5BT44	3.5e-36	100.00	U6 snRNA-associated Sm-like protein LSm5 OS=Parasponia andersonii OX=3476 GN=LSM...	[more]
A0A0B0NQ45	2.3e-35	98.72	U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium arboreum OX=29729 GN=LOC10...	[more]
A0A2P5WT65	2.3e-35	98.72	U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium barbadense OX=3634 GN=LSM5...	[more]
A0A0B2RAJ5	2.3e-35	98.72	U6 snRNA-associated Sm-like protein LSm5 OS=Glycine soja OX=3848 GN=LSM5 PE=3 SV...	[more]

BLAST of CaUC07G126760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48870.1	6.3e-38	94.87	Small nuclear ribonucleoprotein family protein	[more]
AT4G30330.1	8.3e-06	36.99	Small nuclear ribonucleoprotein family protein	[more]
AT2G18740.1	1.1e-05	36.99	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.1	7.0e-05	27.63	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.2	7.0e-05	27.63	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 12..80 e-value: 4.2E-19 score: 79.4
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 13..79 e-value: 3.7E-20 score: 71.4
None	No IPR available	GENE3D	2.30.30.100		coord: 9..83 e-value: 2.7E-25 score: 89.9
None	No IPR available	PANTHER	PTHR20971:SF4	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5	coord: 1..80
IPR033871	Sm-like protein LSm5	PANTHER	PTHR20971	U6 SNRNA-ASSOCIATED PROTEIN	coord: 1..80
IPR033871	Sm-like protein LSm5	CDD	cd01732	LSm5	coord: 7..77 e-value: 1.43879E-47 score: 144.695
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 8..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC07G126760.1	CaUC07G126760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:1990726	Lsm1-7-Pat1 complex
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003723	RNA binding