CaUC07G126670 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC07G126670
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionglycine-rich protein 5-like
LocationCiama_Chr07: 1921398 .. 1923399 (-)
RNA-Seq ExpressionCaUC07G126670
SyntenyCaUC07G126670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATTATAAGCTTAATTTGATGTTGGTTATGGCTATTGCTGCATTTGTAGTTCATGTTGGTGCAAGAACTACCCCAAATGAGGCTGCAAAAGGCCTCAATGACCAAAAGAACTTCCTCAACTATGGTGGGGTTGGTGGCATTGGTGGAATTGGTGATGGTGGACTCCCCTTCGGAGGCGGTGGCGGTATCAGCGGAGGAGGACTCGGAGGAGGCGGTGGCTTAGGCGGGCTTGGCGGTGGCATTGGCGGATACGGTGGGGTTGGCATTGGTGGCATTGGTGGTGGAGTTGGCGGTGGAGTGATCGGCGGGATTGGTGGTGGTGGTGGATTTGTTAAGCTTCCTTGAAGTAAACTTAGAGGGGGTTTATAAAATCTAGTGTGTTTTTGATGTATTTTGTAATAATGTTTGGGAGTTTCTTTAGGGTTATAAGAAAAGCTAAGTCATGTGTGTGTTTGTTTGTTTCATGAATTTAGTTAACTTTATCTTAGCTTCTTGGAAAGGATGTTTGTGTGAAGAAGATTTAAGGTGCTACCCTTTTAAGTGTATGAATAAATATAATATCTGTTTTTGTTCCCTATATTCTCTCTTCTTACTCATTTTGTCCTTTCAATTGTCAATAATGGTATAAAATCACAAAATTAAAACAAAAAGATGATCACAAAATAAAGAATAAAATATGCCTTCTTGTAATTTCATCTTTTACAAGAAAAAGCACTTTATCTAAATTAAAAACACTTTGTTATTATACAACAAAAACACACACATACACAAATGTAGACATGTGTTCACATGCACCAGATTTCAACAAAAAAAAATTTTAATGCGTTAAGATGAACTTGAATTTGAATTTTATTTTGTAATATGATTCATTCTCTCATACAAATACATATATACTTGACTCAAGCCTTCAAGGGAAATTATGGTATTCAAAGCCTTTCGACCTTCAAAGCATTTTTGGTCTTCAAAAGCTTTAAAAAATTTATGGTCTTTTAGAATTAGTGCTATGAATTATCAAATTTCTAGATCCCTCAAATGAAGAGGAGCTTCTTTATTTATAGAGTTTCCATTAGTCATGTAGGCTTATACTTAGGATGACTTTTGAGCCCAATCAATTGGATTTGGGCTGGATTGACATTTGAGCCACAAAAGCCTATATTTTTAGGAAAAATTATAATTTAGCTCAATTCAACTTGTACTAAAATATCAAGGGCAATTATAAATTCAATCTATTTTCAAAACTTATTTTTTCATATATAGGATTTAACGGATTTTTCGCACAAAAATAACCTTTGTGGTGGGCGGCTGAAGGGAGAATATGCATTGAAAAAATATTTACATATTTACGAAGCACCTTTAATATTGGAGAGAGAAAATGCATTTATTATATAATATTAATTAGTTAAGATTTTATTCCCATTTTCAATTGGAGAGAGAAAATGCATTTTATATAATTTTATTTTTCATTTAACACATTTCACGTATCAAGCAACTAGTTTTACTTTTACTGGTATGTTCATGTTATTTTTAAATACATTTGAACATTGTATTAGATTTTTGCAAATGTTCTGACCAATATTTGAAATATAAATGTATTCAAATAGATGATTTACCATTTTTGAAAGTTTCGATGTTCAATGTTCAATATAAATTACAGTATATATCATAAATTTCATTTATATTATAGTATATATCATAAATTCAAAGTAGTCAGAAATAAACAAAAATATCTACCACAATATATAAATCACATATAGACTCAATTTTCAACATAAATCCTATTATATATCATATATCACGACATATATCATGGTTTGCATGCACGAGAATCACCCCATCTTCATCTCTTCTAGAACCCATTGCCGTCGTCGTCCATGCCCATTTGTCGTCGTTCGACCATCCGTCGTGTGTCCACCATCTTCCAAGTCGTCGCGCTGCCATTCGCTGTCAAGTCAAGTCGCTCATCATCCGCTGTCCAATCAAGTTGAGCACTGTCTAA

mRNA sequence

ATGGCAAATTATAAGCTTAATTTGATGTTGGTTATGGCTATTGCTGCATTTGTAGTTCATGTTGGTGCAAGAACTACCCCAAATGAGGCTGCAAAAGGCCTCAATGACCAAAAGAACTTCCTCAACTATGGTGGGGTTGGTGGCATTGGTGGAATTGGTGATGGTGGACTCCCCTTCGGAGGCGGTGGCGGTATCAGCGGAGGAGGACTCGGAGGAGGCGGTGGCTTAGGCGGGCTTGGCGGTGGCATTGGCGGATACGGTGGGGTTGGCATTGGTGGCATTGGTGGTGGAGTTGGCGGTGGAGTGATCGGCGGGATTGGTGGTGGTGAACCCATTGCCGTCGTCGTCCATGCCCATTTGTCGTCGTTCGACCATCCGTCGTGTGTCCACCATCTTCCAAGTCGTCGCGCTGCCATTCGCTGTCAAGTCAAGTCGCTCATCATCCGCTGTCCAATCAAGTTGAGCACTGTCTAA

Coding sequence (CDS)

ATGGCAAATTATAAGCTTAATTTGATGTTGGTTATGGCTATTGCTGCATTTGTAGTTCATGTTGGTGCAAGAACTACCCCAAATGAGGCTGCAAAAGGCCTCAATGACCAAAAGAACTTCCTCAACTATGGTGGGGTTGGTGGCATTGGTGGAATTGGTGATGGTGGACTCCCCTTCGGAGGCGGTGGCGGTATCAGCGGAGGAGGACTCGGAGGAGGCGGTGGCTTAGGCGGGCTTGGCGGTGGCATTGGCGGATACGGTGGGGTTGGCATTGGTGGCATTGGTGGTGGAGTTGGCGGTGGAGTGATCGGCGGGATTGGTGGTGGTGAACCCATTGCCGTCGTCGTCCATGCCCATTTGTCGTCGTTCGACCATCCGTCGTGTGTCCACCATCTTCCAAGTCGTCGCGCTGCCATTCGCTGTCAAGTCAAGTCGCTCATCATCCGCTGTCCAATCAAGTTGAGCACTGTCTAA

Protein sequence

MANYKLNLMLVMAIAAFVVHVGARTTPNEAAKGLNDQKNFLNYGGVGGIGGIGDGGLPFGGGGGISGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGGGEPIAVVVHAHLSSFDHPSCVHHLPSRRAAIRCQVKSLIIRCPIKLSTV
Homology
BLAST of CaUC07G126670 vs. NCBI nr
Match: XP_038887967.1 (acanthoscurrin-1-like [Benincasa hispida])

HSP 1 Score: 154.5 bits (389), Expect = 7.8e-34
Identity = 99/109 (90.83%), Postives = 102/109 (93.58%), Query Frame = 0

Query: 1   MANYKLNLMLVMAIAAFVVHVGARTTPNEAAKGLNDQKNFLNYGGVGGIGGIGDGGLPFG 60
           MANYKLNLMLVMA+AAF VHV ART PNEA KGLNDQKNFLNYGG+GGIGGIGD GLPFG
Sbjct: 1   MANYKLNLMLVMAMAAFAVHVAARTAPNEAGKGLNDQKNFLNYGGIGGIGGIGDSGLPFG 60

Query: 61  GGGGISGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGGG 110
           GGGGI GGGLGGGGGLGGLGGGIGG GGVGIGGIGGG+GGGVIGGIGGG
Sbjct: 61  GGGGIGGGGLGGGGGLGGLGGGIGGVGGVGIGGIGGGIGGGVIGGIGGG 109

BLAST of CaUC07G126670 vs. NCBI nr
Match: XP_008447334.1 (PREDICTED: acanthoscurrin-2-like [Cucumis melo] >KAA0053623.1 acanthoscurrin-2-like [Cucumis melo var. makuwa] >TYJ97692.1 acanthoscurrin-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 8.9e-30
Identity = 95/108 (87.96%), Postives = 99/108 (91.67%), Query Frame = 0

Query: 1   MANYKLNLMLVMAIAAFVVHVGARTTPNEAAKGLNDQKNFLNYGGVGGIGGIGDGGLPFG 60
           MANYKLNLMLVMA+AA  +HV ART PNEAAKGLNDQKNFLNYGGVGG  GIGDGGLPFG
Sbjct: 1   MANYKLNLMLVMAMAALALHVAARTAPNEAAKGLNDQKNFLNYGGVGGFSGIGDGGLPFG 60

Query: 61  GGGGISGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGG 109
           GG G  GGGLGGGGGLGGLGGG+GG+GGVGIGGIGGGVGGGVIGGIGG
Sbjct: 61  GGFG--GGGLGGGGGLGGLGGGVGGFGGVGIGGIGGGVGGGVIGGIGG 106

BLAST of CaUC07G126670 vs. NCBI nr
Match: XP_011652144.1 (glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN59369.1 hypothetical protein Csa_000879 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 2.4e-27
Identity = 95/111 (85.59%), Postives = 98/111 (88.29%), Query Frame = 0

Query: 1   MANYKLNLMLV--MAIAAFVVHVGARTTPN-EAAKGLNDQKNFLNYGGVGGIGGIGDGGL 60
           MANYKLNLMLV  MA+AAF  HV ART PN +AAKGLNDQKNFLNYGGVGG  GIGD GL
Sbjct: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60

Query: 61  PFGGGGGISGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGG 109
           PF  GGGI GGGLGGGGGLGGLGGGIGG+GGVGIGGIGGGVGGGVIGGIGG
Sbjct: 61  PF--GGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGG 109

BLAST of CaUC07G126670 vs. NCBI nr
Match: XP_023511522.1 (glycine-rich protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.0 bits (227), Expect = 4.8e-15
Identity = 76/111 (68.47%), Postives = 83/111 (74.77%), Query Frame = 0

Query: 1   MANYKLNLMLV--MAIAAFVVHVGARTTPNEAAKGLNDQKNFLNYGGVGGIGGIGDGGLP 60
           MAN KLNLML+  MA+AAF +HV ART P EAAKGLNDQKNFL+    GG  GIGD GLP
Sbjct: 1   MAN-KLNLMLIMAMAMAAFALHVAARTAPIEAAKGLNDQKNFLS----GGFSGIGDSGLP 60

Query: 61  FGGGGGISGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGGG 110
           F        GGLGGGGGLGGLGGG+GG+GGVGIGGIG GV     GG+GGG
Sbjct: 61  F--------GGLGGGGGLGGLGGGLGGFGGVGIGGIGAGV-----GGVGGG 93

BLAST of CaUC07G126670 vs. NCBI nr
Match: KAG6571569.1 (putative pectate lyase 15, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 6.2e-15
Identity = 75/111 (67.57%), Postives = 82/111 (73.87%), Query Frame = 0

Query: 1   MANYKLNLMLV--MAIAAFVVHVGARTTPNEAAKGLNDQKNFLNYGGVGGIGGIGDGGLP 60
           MAN KLNLML+  MA+AAF +HV ART P EAAKGLNDQKNFL     GG  GIGD GLP
Sbjct: 469 MAN-KLNLMLIMAMAVAAFALHVAARTAPIEAAKGLNDQKNFLG----GGFSGIGDSGLP 528

Query: 61  FGGGGGISGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGGG 110
           F        GGLGGGGGLGG+GGG+GG+GGVGIGGIG GV     GG+GGG
Sbjct: 529 F--------GGLGGGGGLGGIGGGLGGFGGVGIGGIGAGV-----GGVGGG 561

BLAST of CaUC07G126670 vs. ExPASy TrEMBL
Match: A0A5A7UCJ9 (Acanthoscurrin-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37G00690 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.3e-30
Identity = 95/108 (87.96%), Postives = 99/108 (91.67%), Query Frame = 0

Query: 1   MANYKLNLMLVMAIAAFVVHVGARTTPNEAAKGLNDQKNFLNYGGVGGIGGIGDGGLPFG 60
           MANYKLNLMLVMA+AA  +HV ART PNEAAKGLNDQKNFLNYGGVGG  GIGDGGLPFG
Sbjct: 1   MANYKLNLMLVMAMAALALHVAARTAPNEAAKGLNDQKNFLNYGGVGGFSGIGDGGLPFG 60

Query: 61  GGGGISGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGG 109
           GG G  GGGLGGGGGLGGLGGG+GG+GGVGIGGIGGGVGGGVIGGIGG
Sbjct: 61  GGFG--GGGLGGGGGLGGLGGGVGGFGGVGIGGIGGGVGGGVIGGIGG 106

BLAST of CaUC07G126670 vs. ExPASy TrEMBL
Match: A0A1S3BI24 (acanthoscurrin-2-like OS=Cucumis melo OX=3656 GN=LOC103489805 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.3e-30
Identity = 95/108 (87.96%), Postives = 99/108 (91.67%), Query Frame = 0

Query: 1   MANYKLNLMLVMAIAAFVVHVGARTTPNEAAKGLNDQKNFLNYGGVGGIGGIGDGGLPFG 60
           MANYKLNLMLVMA+AA  +HV ART PNEAAKGLNDQKNFLNYGGVGG  GIGDGGLPFG
Sbjct: 1   MANYKLNLMLVMAMAALALHVAARTAPNEAAKGLNDQKNFLNYGGVGGFSGIGDGGLPFG 60

Query: 61  GGGGISGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGG 109
           GG G  GGGLGGGGGLGGLGGG+GG+GGVGIGGIGGGVGGGVIGGIGG
Sbjct: 61  GGFG--GGGLGGGGGLGGLGGGVGGFGGVGIGGIGGGVGGGVIGGIGG 106

BLAST of CaUC07G126670 vs. ExPASy TrEMBL
Match: A0A0A0LEM4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814360 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 95/111 (85.59%), Postives = 98/111 (88.29%), Query Frame = 0

Query: 1   MANYKLNLMLV--MAIAAFVVHVGARTTPN-EAAKGLNDQKNFLNYGGVGGIGGIGDGGL 60
           MANYKLNLMLV  MA+AAF  HV ART PN +AAKGLNDQKNFLNYGGVGG  GIGD GL
Sbjct: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60

Query: 61  PFGGGGGISGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGG 109
           PF  GGGI GGGLGGGGGLGGLGGGIGG+GGVGIGGIGGGVGGGVIGGIGG
Sbjct: 61  PF--GGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGG 109

BLAST of CaUC07G126670 vs. ExPASy TrEMBL
Match: A0A6J1HG59 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111463979 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.1e-15
Identity = 75/111 (67.57%), Postives = 82/111 (73.87%), Query Frame = 0

Query: 1   MANYKLNLMLV--MAIAAFVVHVGARTTPNEAAKGLNDQKNFLNYGGVGGIGGIGDGGLP 60
           MAN KLNLML+  MA+AAF +HV ART P EAAKGLNDQKNFL     GG  GIGD GLP
Sbjct: 1   MAN-KLNLMLIMAMAMAAFALHVAARTAPIEAAKGLNDQKNFLG----GGFSGIGDSGLP 60

Query: 61  FGGGGGISGGGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGGG 110
           F        GGLGGGGGLGG+GGG+GG+GGVGIGGIG GV     GG+GGG
Sbjct: 61  F--------GGLGGGGGLGGIGGGLGGFGGVGIGGIGAGV-----GGVGGG 93

BLAST of CaUC07G126670 vs. ExPASy TrEMBL
Match: A0A6J1DV95 (acanthoscurrin-1-like OS=Momordica charantia OX=3673 GN=LOC111024760 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 9.7e-14
Identity = 74/111 (66.67%), Postives = 82/111 (73.87%), Query Frame = 0

Query: 8   LMLVMAIAAFVVHVGARTTPNE----AAKGLNDQKNFLNYGGVGGIGGIGDGGLPFGGGG 67
           LMLV+A+AAF V   AR  P +    A +GL DQKN LNYGG+GG  GIGD GLP GG G
Sbjct: 9   LMLVVAMAAFAVQASARAAPTDHHDPAGEGLKDQKNLLNYGGLGGFSGIGDNGLPVGGIG 68

Query: 68  GISG-----GGLGGG-GGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGG 109
           G+ G     GGLGGG GGLGGLGGGIGGYGG GIGGIG G+GGG +GGIGG
Sbjct: 69  GVVGLGGGLGGLGGGAGGLGGLGGGIGGYGGGGIGGIGVGIGGGALGGIGG 119

BLAST of CaUC07G126670 vs. TAIR 10
Match: AT4G29030.1 (Putative membrane lipoprotein )

HSP 1 Score: 48.9 bits (115), Expect = 4.3e-06
Identity = 59/114 (51.75%), Postives = 72/114 (63.16%), Query Frame = 0

Query: 1   MANYKLNLMLVMAIAAFVVHVGARTTPNEAAKGLNDQKNFLNYGGVGGIGGIGDGGLPFG 60
           MA +   + LV A+A+  +  GAR  P     GL+DQKN+L YG  GG  G+GD GLPFG
Sbjct: 1   MAKWFFTIFLVFALAS-ALACGARNVP----VGLSDQKNYLGYG--GGYSGVGDNGLPFG 60

Query: 61  G-GGGISG-GGLGGGGGLGGLGGGIGGYGGVGIGGIGGGVGGGVIGGIGGGEPI 113
           G GGG+SG GG  G GG GG GGG+G       GG+GGG G G+ GG+GGG  I
Sbjct: 61  GVGGGVSGPGGNLGYGGFGGAGGGLG-------GGLGGGAGSGLGGGLGGGSGI 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038887967.17.8e-3490.83acanthoscurrin-1-like [Benincasa hispida][more]
XP_008447334.18.9e-3087.96PREDICTED: acanthoscurrin-2-like [Cucumis melo] >KAA0053623.1 acanthoscurrin-2-l... [more]
XP_011652144.12.4e-2785.59glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN59369.1 hypoth... [more]
XP_023511522.14.8e-1568.47glycine-rich protein 5-like [Cucurbita pepo subsp. pepo][more]
KAG6571569.16.2e-1567.57putative pectate lyase 15, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UCJ94.3e-3087.96Acanthoscurrin-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
A0A1S3BI244.3e-3087.96acanthoscurrin-2-like OS=Cucumis melo OX=3656 GN=LOC103489805 PE=4 SV=1[more]
A0A0A0LEM41.2e-2785.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814360 PE=4 SV=1[more]
A0A6J1HG595.1e-1567.57glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111463979 PE=4 S... [more]
A0A6J1DV959.7e-1466.67acanthoscurrin-1-like OS=Momordica charantia OX=3673 GN=LOC111024760 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G29030.14.3e-0651.75Putative membrane lipoprotein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34463:SF11GLYCINE-RICH PROTEINcoord: 1..110
NoneNo IPR availablePANTHERPTHR34463GLYCINE-RICH PROTEINcoord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC07G126670.1CaUC07G126670.1mRNA