CaUC07G126090 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC07G126090
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like
Location	Ciama_Chr07: 1225652 .. 1226236 (+)
RNA-Seq Expression	CaUC07G126090
Synteny	CaUC07G126090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAATACTCTCTGAATTTGAAGCCCTCAACAACAACAACAACAATCAACAATTTGGATTAGTAGTATCCAACAATAATCTTCAAAATTTAGTTGTTGGTTCTTCTTCTTCGTCGTCTTCATCTTCATCTTCATCTTCAAGTCGTTACGAGAATCAAAAACGGCGAGATTGGAACACATTTTGTCAATACCTTAAAAATCATAGACCCCCACTTGCTCTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGGTATTTAGATCAATTTGGTAAAACCAAAGTTCATACTCCAATTTGCCCTTTTTATGGCCATCCTAACCCACCAGCCCCTTGCCCTTGCCCTCTACGTCAAGCTTGGGGCAGCCTTGATGCTCTTATTGGTAGACTTCGGGCAGCCTTTGAAGAGAATGGTGGGATGCCCGAAGCTAATCCTTTTGGTGCCCGAGCTGTACGGCTTTATCTTCGAGAAGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGCTATGAGAAGAAGAAAAGAAAGCGTCCTCAACAACAACAACAAATTCCTCAATCAACTAATGGAGCTTGA

mRNA sequence

ATGGATTCAATACTCTCTGAATTTGAAGCCCTCAACAACAACAACAACAATCAACAATTTGGATTAGTAGTATCCAACAATAATCTTCAAAATTTAGTTGTTGGTTCTTCTTCTTCGTCGTCTTCATCTTCATCTTCATCTTCAAGTCGTTACGAGAATCAAAAACGGCGAGATTGGAACACATTTTGTCAATACCTTAAAAATCATAGACCCCCACTTGCTCTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGGTATTTAGATCAATTTGGTAAAACCAAAGTTCATACTCCAATTTGCCCTTTTTATGGCCATCCTAACCCACCAGCCCCTTGCCCTTGCCCTCTACGTCAAGCTTGGGGCAGCCTTGATGCTCTTATTGGTAGACTTCGGGCAGCCTTTGAAGAGAATGGTGGGATGCCCGAAGCTAATCCTTTTGGTGCCCGAGCTGTACGGCTTTATCTTCGAGAAGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGCTATGAGAAGAAGAAAAGAAAGCGTCCTCAACAACAACAACAAATTCCTCAATCAACTAATGGAGCTTGA

Coding sequence (CDS)

ATGGATTCAATACTCTCTGAATTTGAAGCCCTCAACAACAACAACAACAATCAACAATTTGGATTAGTAGTATCCAACAATAATCTTCAAAATTTAGTTGTTGGTTCTTCTTCTTCGTCGTCTTCATCTTCATCTTCATCTTCAAGTCGTTACGAGAATCAAAAACGGCGAGATTGGAACACATTTTGTCAATACCTTAAAAATCATAGACCCCCACTTGCTCTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGGTATTTAGATCAATTTGGTAAAACCAAAGTTCATACTCCAATTTGCCCTTTTTATGGCCATCCTAACCCACCAGCCCCTTGCCCTTGCCCTCTACGTCAAGCTTGGGGCAGCCTTGATGCTCTTATTGGTAGACTTCGGGCAGCCTTTGAAGAGAATGGTGGGATGCCCGAAGCTAATCCTTTTGGTGCCCGAGCTGTACGGCTTTATCTTCGAGAAGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGCTATGAGAAGAAGAAAAGAAAGCGTCCTCAACAACAACAACAAATTCCTCAATCAACTAATGGAGCTTGA

Protein sequence

MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQQIPQSTNGA

Homology

[Close]

BLAST of CaUC07G126090 vs. NCBI nr
Match: XP_008447416.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo] >KAA0038047.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo var. makuwa] >TYK00055.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 348.6 bits (893), Expect = 3.5e-92
Identity = 181/193 (93.78%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWN 60
           MDSILSEFE+L NNNNN  FG+VV+NN LQNLVVG  SSSSSSSSSSSSRYENQKRRDWN
Sbjct: 1   MDSILSEFESL-NNNNNPPFGVVVTNNTLQNLVVG--SSSSSSSSSSSSRYENQKRRDWN 60

Query: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120
           TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180
           QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180

Query: 181 PQQQQQIPQSTNG 194
           P QQQQI QS+NG
Sbjct: 181 P-QQQQIAQSSNG 189

[Close]

BLAST of CaUC07G126090 vs. NCBI nr
Match: XP_038887548.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_038887549.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_038887550.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida])

HSP 1 Score: 348.6 bits (893), Expect = 3.5e-92
Identity = 179/195 (91.79%), Postives = 180/195 (92.31%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWN 60
           MDSIL EFE  NNNNN QQFGLVVSN  LQNLVVG      SSSSS+SSRYENQKRRDWN
Sbjct: 1   MDSILPEFEGFNNNNNQQQFGLVVSNTTLQNLVVG------SSSSSTSSRYENQKRRDWN 60

Query: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120
           TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180
           QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180

Query: 181 P-QQQQQIPQSTNGA 195
           P QQQQQI QS NGA
Sbjct: 181 PQQQQQQISQSINGA 189

[Close]

BLAST of CaUC07G126090 vs. NCBI nr
Match: XP_011651439.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KAE8650655.1 hypothetical protein Csa_009615 [Cucumis sativus])

HSP 1 Score: 346.3 bits (887), Expect = 1.7e-91
Identity = 180/191 (94.24%), Postives = 184/191 (96.34%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWN 60
           MDSILSEFE+L NNNNNQ FG+VV+NN LQNLVVG  SSSSSSSSSSSSRYENQKRRDWN
Sbjct: 1   MDSILSEFESL-NNNNNQPFGVVVTNNTLQNLVVG--SSSSSSSSSSSSRYENQKRRDWN 60

Query: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120
           TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180
           QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180

Query: 181 PQQQQQIPQST 192
           P QQQQI QS+
Sbjct: 181 P-QQQQIAQSS 187

[Close]

BLAST of CaUC07G126090 vs. NCBI nr
Match: XP_022963938.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata] >XP_022963939.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata] >XP_022967435.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita maxima] >XP_022967436.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita maxima] >XP_022967437.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita maxima] >XP_023511397.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita pepo subsp. pepo] >KAG6571527.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 325.9 bits (834), Expect = 2.4e-85
Identity = 169/197 (85.79%), Postives = 176/197 (89.34%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWN 60
           MDSI+ EFE L   NN QQFG+    +NLQNL +G      SSSSSS+SRYENQKRRDWN
Sbjct: 1   MDSIIPEFEGL---NNTQQFGV----SNLQNLGIG------SSSSSSNSRYENQKRRDWN 60

Query: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120
           TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180
           QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180

Query: 181 PQ---QQQQIPQSTNGA 195
           PQ   QQQQ+PQ +NGA
Sbjct: 181 PQQQRQQQQLPQPSNGA 184

[Close]

BLAST of CaUC07G126090 vs. NCBI nr
Match: XP_023532600.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 311.6 bits (797), Expect = 4.7e-81
Identity = 162/184 (88.04%), Postives = 169/184 (91.85%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWN 60
           MDSI +EFE L    N QQFG     +++ NL  GSSSSSSSSSSSS+SRYENQKRRDWN
Sbjct: 1   MDSI-TEFEGL----NAQQFG----GSSVPNLGGGSSSSSSSSSSSSNSRYENQKRRDWN 60

Query: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120
           TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180
           QAWGSLDALIGRLRAAFEENGGMPEANPFGARA+RLYLREVRD+QSKARGISYEKKKRKR
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKR 175

Query: 181 PQQQ 185
           PQQQ
Sbjct: 181 PQQQ 175

[Close]

BLAST of CaUC07G126090 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.1e-71
Identity = 136/166 (81.93%), Postives = 148/166 (89.16%), Query Frame = 0


Query: 23  VVSNNNLQNLVVGSSS-------SSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLAL 82
           ++SNN+  + V G++        SSSSS S++SSRYENQKRRDWNTF QYL+NHRPPL+L
Sbjct: 22  IISNNS--SSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSL 81

Query: 83  SRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRA 142
           SRCSGAHVLEFLRYLDQFGKTKVHT IC FYGHPNPPAPCPCPLRQAWGSLDALIGRLRA
Sbjct: 82  SRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRA 141

Query: 143 AFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 182
           AFEENGG PE NPFGARAVRLYLREVRD+QSKARG+SYEKKKRKRP
Sbjct: 142 AFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRP 185

[Close]

BLAST of CaUC07G126090 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 5.1e-70
Identity = 133/164 (81.10%), Postives = 143/164 (87.20%), Query Frame = 0


Query: 26  NNNLQNLVVGSSSSSSSSSSSSS--------SRYENQKRRDWNTFCQYLKNHRPPLALSR 85
           N NL      +++++SSSSSSSS        SRYENQKRRDWNTF QYL+NHRPPL+LSR
Sbjct: 16  NTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSR 75

Query: 86  CSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF 145
           CSGAHVLEFLRYLDQFGKTKVHT +CPF+GHPNPPAPC CPLRQAWGSLDALIGRLRAAF
Sbjct: 76  CSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAF 135

Query: 146 EENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 182
           EENGG PE NPFGARAVRLYLREVRD Q+KARGISYEKKKRKRP
Sbjct: 136 EENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of CaUC07G126090 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 6.7e-70
Identity = 125/147 (85.03%), Postives = 136/147 (92.52%), Query Frame = 0


Query: 35  GSSSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFG 94
           G    S SSSS S SRYE+QKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFL+Y+DQFG
Sbjct: 65  GGGGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFG 124

Query: 95  KTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAV 154
           KTKVHTP+CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAV
Sbjct: 125 KTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAV 184

Query: 155 RLYLREVRDLQSKARGISYEKKKRKRP 182
           RLYLREVR+ Q++ARGISYEKKKRK+P
Sbjct: 185 RLYLREVRETQARARGISYEKKKRKKP 211

[Close]

BLAST of CaUC07G126090 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 6.7e-70
Identity = 125/147 (85.03%), Postives = 136/147 (92.52%), Query Frame = 0


Query: 35  GSSSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFG 94
           G    S SSSS S SRYE+QKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFL+Y+DQFG
Sbjct: 65  GGGGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFG 124

Query: 95  KTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAV 154
           KTKVHTP+CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAV
Sbjct: 125 KTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAV 184

Query: 155 RLYLREVRDLQSKARGISYEKKKRKRP 182
           RLYLREVR+ Q++ARGISYEKKKRK+P
Sbjct: 185 RLYLREVRETQARARGISYEKKKRKKP 211

[Close]

BLAST of CaUC07G126090 vs. ExPASy Swiss-Prot
Match: A2XVI8 (Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.4e-67
Identity = 126/156 (80.77%), Postives = 140/156 (89.74%), Query Frame = 0


Query: 35  GSSSSSSSSS-----SSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRY 94
           GSSSS+SS S       S SRYE QKRRDWNTF QYL+NHRPPL+L++CSGAHVLEFLRY
Sbjct: 21  GSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRY 80

Query: 95  LDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPF 154
           LDQFGKTKVHT  CPF+GHP+PPAPCPCPLRQAWGSLDAL+GRLRAAFEENGG PE+NPF
Sbjct: 81  LDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPF 140

Query: 155 GARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQ 186
            ARAVRLYLREVR+ Q++ARG+SYEKKKRK+PQQQQ
Sbjct: 141 AARAVRLYLREVREHQARARGVSYEKKKRKKPQQQQ 176

[Close]

BLAST of CaUC07G126090 vs. ExPASy TrEMBL
Match: A0A0A0LB62 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383780 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.4e-93
Identity = 182/193 (94.30%), Postives = 186/193 (96.37%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWN 60
           MDSILSEFE+L NNNNNQ FG+VV+NN LQNLVVG  SSSSSSSSSSSSRYENQKRRDWN
Sbjct: 1   MDSILSEFESL-NNNNNQPFGVVVTNNTLQNLVVG--SSSSSSSSSSSSRYENQKRRDWN 60

Query: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120
           TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180
           QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180

Query: 181 PQQQQQIPQSTNG 194
           P QQQQI QS+NG
Sbjct: 181 P-QQQQIAQSSNG 189

[Close]

BLAST of CaUC07G126090 vs. ExPASy TrEMBL
Match: A0A5D3BLY0 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold31142G00010 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.7e-92
Identity = 181/193 (93.78%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWN 60
           MDSILSEFE+L NNNNN  FG+VV+NN LQNLVVG  SSSSSSSSSSSSRYENQKRRDWN
Sbjct: 1   MDSILSEFESL-NNNNNPPFGVVVTNNTLQNLVVG--SSSSSSSSSSSSRYENQKRRDWN 60

Query: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120
           TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180
           QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180

Query: 181 PQQQQQIPQSTNG 194
           P QQQQI QS+NG
Sbjct: 181 P-QQQQIAQSSNG 189

[Close]

BLAST of CaUC07G126090 vs. ExPASy TrEMBL
Match: A0A1S3BHE8 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC103489869 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.7e-92
Identity = 181/193 (93.78%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWN 60
           MDSILSEFE+L NNNNN  FG+VV+NN LQNLVVG  SSSSSSSSSSSSRYENQKRRDWN
Sbjct: 1   MDSILSEFESL-NNNNNPPFGVVVTNNTLQNLVVG--SSSSSSSSSSSSRYENQKRRDWN 60

Query: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120
           TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180
           QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180

Query: 181 PQQQQQIPQSTNG 194
           P QQQQI QS+NG
Sbjct: 181 P-QQQQIAQSSNG 189

[Close]

BLAST of CaUC07G126090 vs. ExPASy TrEMBL
Match: A0A6J1HQU3 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita maxima OX=3661 GN=LOC111466975 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.2e-85
Identity = 169/197 (85.79%), Postives = 176/197 (89.34%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWN 60
           MDSI+ EFE L   NN QQFG+    +NLQNL +G      SSSSSS+SRYENQKRRDWN
Sbjct: 1   MDSIIPEFEGL---NNTQQFGV----SNLQNLGIG------SSSSSSNSRYENQKRRDWN 60

Query: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120
           TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180
           QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180

Query: 181 PQ---QQQQIPQSTNGA 195
           PQ   QQQQ+PQ +NGA
Sbjct: 181 PQQQRQQQQLPQPSNGA 184

[Close]

BLAST of CaUC07G126090 vs. ExPASy TrEMBL
Match: A0A6J1HLN0 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN=LOC111464089 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.2e-85
Identity = 169/197 (85.79%), Postives = 176/197 (89.34%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVVSNNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWN 60
           MDSI+ EFE L   NN QQFG+    +NLQNL +G      SSSSSS+SRYENQKRRDWN
Sbjct: 1   MDSIIPEFEGL---NNTQQFGV----SNLQNLGIG------SSSSSSNSRYENQKRRDWN 60

Query: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120
           TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180
           QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180

Query: 181 PQ---QQQQIPQSTNGA 195
           PQ   QQQQ+PQ +NGA
Sbjct: 181 PQQQRQQQQLPQPSNGA 184

[Close]

BLAST of CaUC07G126090 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 270.0 bits (689), Expect = 1.5e-72
Identity = 136/166 (81.93%), Postives = 148/166 (89.16%), Query Frame = 0


Query: 23  VVSNNNLQNLVVGSSS-------SSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLAL 82
           ++SNN+  + V G++        SSSSS S++SSRYENQKRRDWNTF QYL+NHRPPL+L
Sbjct: 22  IISNNS--SSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSL 81

Query: 83  SRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRA 142
           SRCSGAHVLEFLRYLDQFGKTKVHT IC FYGHPNPPAPCPCPLRQAWGSLDALIGRLRA
Sbjct: 82  SRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRA 141

Query: 143 AFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 182
           AFEENGG PE NPFGARAVRLYLREVRD+QSKARG+SYEKKKRKRP
Sbjct: 142 AFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRP 185

[Close]

BLAST of CaUC07G126090 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 265.4 bits (677), Expect = 3.6e-71
Identity = 133/164 (81.10%), Postives = 143/164 (87.20%), Query Frame = 0


Query: 26  NNNLQNLVVGSSSSSSSSSSSSS--------SRYENQKRRDWNTFCQYLKNHRPPLALSR 85
           N NL      +++++SSSSSSSS        SRYENQKRRDWNTF QYL+NHRPPL+LSR
Sbjct: 16  NTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSR 75

Query: 86  CSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF 145
           CSGAHVLEFLRYLDQFGKTKVHT +CPF+GHPNPPAPC CPLRQAWGSLDALIGRLRAAF
Sbjct: 76  CSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAF 135

Query: 146 EENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 182
           EENGG PE NPFGARAVRLYLREVRD Q+KARGISYEKKKRKRP
Sbjct: 136 EENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of CaUC07G126090 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 245.7 bits (626), Expect = 3.0e-65
Identity = 124/164 (75.61%), Postives = 138/164 (84.15%), Query Frame = 0


Query: 38  SSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTK 97
           +SS+  +  SSSRYENQKRRDWNTFCQYL+NHRPPL+L  CSGAHVLEFLRYLDQFGKTK
Sbjct: 13  NSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTK 72

Query: 98  VHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLY 157
           VH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PEANPFG+RAVRL+
Sbjct: 73  VHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLF 132

Query: 158 LREVRDLQSKARGISYEKKK----RKRP--------QQQQQIPQ 190
           LREVRD Q+KARG+SYEKK+    R++P        QQQQQ PQ
Sbjct: 133 LREVRDFQAKARGVSYEKKRKRVNRQKPQTQPPLQLQQQQQQPQ 176

[Close]

BLAST of CaUC07G126090 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 240.7 bits (613), Expect = 9.6e-64
Identity = 118/173 (68.21%), Postives = 140/173 (80.92%), Query Frame = 0


Query: 26  NNNLQNLVVGSSSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLE 85
           NN   N  + + + SS SS  SSSRYENQKRRDWNTFCQYL+NH PPL+L+ CSGAHVL+
Sbjct: 9   NNRNPNTSLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLD 68

Query: 86  FLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPE 145
           FLRYLDQFGKTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE
Sbjct: 69  FLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPE 128

Query: 146 ANPFGARAVRLYLREVRDLQSKARGISYEKKKRK---------RPQQQQQIPQ 190
            +PFG+R+VR++LREVRD Q+K+RG+SYEKK+++         +PQ Q  +PQ
Sbjct: 129 TSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQSQPQSQPPLPQ 181

[Close]

BLAST of CaUC07G126090 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-63
Identity = 110/140 (78.57%), Postives = 126/140 (90.00%), Query Frame = 0


Query: 42  SSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTP 101
           SS  ++ SRYE+QKRRDWNTF QYLKNH+PPLALSRCSGAHV+EFL+YLDQFGKTKVH  
Sbjct: 23  SSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVA 82

Query: 102 ICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREV 161
            CP++GH  PP+PC CPL+QAWGSLDALIGRLRAA+EENGG P++NPF ARAVR+YLREV
Sbjct: 83  ACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREV 142

Query: 162 RDLQSKARGISYEKKKRKRP 182
           R+ Q+KARGI YEKKKRKRP
Sbjct: 143 RESQAKARGIPYEKKKRKRP 162

The following BLAST results are available for this feature:

BLAST of CaUC07G126090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447416.1	3.5e-92	93.78	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo] >KAA00...	[more]
XP_038887548.1	3.5e-92	91.79	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_03888754...	[more]
XP_011651439.1	1.7e-91	94.24	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KAE8650655.1 hypot...	[more]
XP_022963938.1	2.4e-85	85.79	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata] >XP_0229639...	[more]
XP_023532600.1	4.7e-81	88.04	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CaUC07G126090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82268	2.1e-71	81.93	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9LW68	5.1e-70	81.10	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XAV5	6.7e-70	85.03	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
Q6K5X1	6.7e-70	85.03	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
A2XVI8	2.4e-67	80.77	Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1	[more]

BLAST of CaUC07G126090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB62	3.4e-93	94.30	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383780 PE=3 S...	[more]
A0A5D3BLY0	1.7e-92	93.78	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BHE8	1.7e-92	93.78	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1HQU3	1.2e-85	85.79	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HLN0	1.2e-85	85.79	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CaUC07G126090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31160.1	1.5e-72	81.93	Protein of unknown function (DUF640)	[more]
AT3G23290.2	3.6e-71	81.10	Protein of unknown function (DUF640)	[more]
AT5G28490.1	3.0e-65	75.61	Protein of unknown function (DUF640)	[more]
AT3G04510.1	9.6e-64	68.21	Protein of unknown function (DUF640)	[more]
AT1G07090.1	2.1e-63	78.57	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 40..163 e-value: 1.0E-66 score: 222.8
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 50..177 score: 84.495857
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..194
None	No IPR available	PANTHER	PTHR31165:SF89	G1-LIKE PROTEIN	coord: 1..189
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 1..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC07G126090.1	CaUC07G126090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus