CaUC06G125050 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G125050
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionprotein P200-like isoform X4
LocationCiama_Chr06: 29845804 .. 29846055 (-)
RNA-Seq ExpressionCaUC06G125050
SyntenyCaUC06G125050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAACTCAGATGCTGAGGAAGAAGAAGATGAAAAAGCAAATTGCATTGAGAGGCAAATTGTGGAGAAAAATGATCTGAGCCTGAGACAGCTGAAGAAGATGTTCAAGGAGAAACTCCAACTTAGCAAAAAGAAGGACAATAATAACATCAACACAAAAGTTGTTGGAGGTGGGGGGAAGGTGAGAACTGCTTTACAGCCAGTGTCAGAAAACCGAATAACCATGGATGAATTGGAGAAGAGATTTTGA

mRNA sequence

ATGAACAACTCAGATGCTGAGGAAGAAGAAGATGAAAAAGCAAATTGCATTGAGAGGCAAATTGTGGAGAAAAATGATCTGAGCCTGAGACAGCTGAAGAAGATGTTCAAGGAGAAACTCCAACTTAGCAAAAAGAAGGACAATAATAACATCAACACAAAAGTTGTTGGAGGTGGGGGGAAGGTGAGAACTGCTTTACAGCCAGTGTCAGAAAACCGAATAACCATGGATGAATTGGAGAAGAGATTTTGA

Coding sequence (CDS)

ATGAACAACTCAGATGCTGAGGAAGAAGAAGATGAAAAAGCAAATTGCATTGAGAGGCAAATTGTGGAGAAAAATGATCTGAGCCTGAGACAGCTGAAGAAGATGTTCAAGGAGAAACTCCAACTTAGCAAAAAGAAGGACAATAATAACATCAACACAAAAGTTGTTGGAGGTGGGGGGAAGGTGAGAACTGCTTTACAGCCAGTGTCAGAAAACCGAATAACCATGGATGAATTGGAGAAGAGATTTTGA

Protein sequence

MNNSDAEEEEDEKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKKDNNNINTKVVGGGGKVRTALQPVSENRITMDELEKRF
Homology
BLAST of CaUC06G125050 vs. NCBI nr
Match: XP_038906922.1 (interaptin-like isoform X1 [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 2.7e-25
Identity = 70/88 (79.55%), Postives = 80/88 (90.91%), Query Frame = 0

Query: 1   MNNSDAEEEED----EKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK-DNNNINTKV 60
           M+NSDAEEEED    EKANCIE+QIVE ND+SLRQLKKMFKEKLQLSK+K DNN+IN+KV
Sbjct: 655 MDNSDAEEEEDGKEQEKANCIEKQIVETNDMSLRQLKKMFKEKLQLSKQKMDNNSINSKV 714

Query: 61  VGGGGKVRTALQPVSENRITMDELEKRF 84
           VGGGGKVRTALQPV EN +T++ELE+RF
Sbjct: 715 VGGGGKVRTALQPVPENIMTINELERRF 742

BLAST of CaUC06G125050 vs. NCBI nr
Match: XP_038906923.1 (interaptin-like isoform X2 [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 2.7e-25
Identity = 70/88 (79.55%), Postives = 80/88 (90.91%), Query Frame = 0

Query: 1   MNNSDAEEEED----EKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK-DNNNINTKV 60
           M+NSDAEEEED    EKANCIE+QIVE ND+SLRQLKKMFKEKLQLSK+K DNN+IN+KV
Sbjct: 652 MDNSDAEEEEDGKEQEKANCIEKQIVETNDMSLRQLKKMFKEKLQLSKQKMDNNSINSKV 711

Query: 61  VGGGGKVRTALQPVSENRITMDELEKRF 84
           VGGGGKVRTALQPV EN +T++ELE+RF
Sbjct: 712 VGGGGKVRTALQPVPENIMTINELERRF 739

BLAST of CaUC06G125050 vs. NCBI nr
Match: XP_008467303.1 (PREDICTED: probable beta-tubulin polyglutamylase [Cucumis melo])

HSP 1 Score: 115.2 bits (287), Expect = 2.8e-22
Identity = 69/86 (80.23%), Postives = 74/86 (86.05%), Query Frame = 0

Query: 1   MNNSDAEEE---EDEKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK-DNNNINTKVV 60
           M+N DAEEE   E  KA CI  QIVEKND+SLRQLKKMFKEKLQL+KKK DNNNINTKVV
Sbjct: 573 MDNLDAEEEDEKEQNKAKCI--QIVEKNDVSLRQLKKMFKEKLQLNKKKMDNNNINTKVV 632

Query: 61  GGGGKVRTALQPVSENRITMDELEKR 83
           GGG KVRTALQPV ENR+T+DELEKR
Sbjct: 633 GGGVKVRTALQPVLENRMTVDELEKR 656

BLAST of CaUC06G125050 vs. NCBI nr
Match: KAA0055115.1 (putative beta-tubulin polyglutamylase [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 4.7e-22
Identity = 68/86 (79.07%), Postives = 74/86 (86.05%), Query Frame = 0

Query: 1   MNNSDAEEE---EDEKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK-DNNNINTKVV 60
           M+N DAEEE   E  KA CI  QIVEKND+SLRQLKKMFKE+LQL+KKK DNNNINTKVV
Sbjct: 573 MDNLDAEEEDEKEQNKAKCI--QIVEKNDISLRQLKKMFKEQLQLNKKKMDNNNINTKVV 632

Query: 61  GGGGKVRTALQPVSENRITMDELEKR 83
           GGG KVRTALQPV ENR+T+DELEKR
Sbjct: 633 GGGVKVRTALQPVPENRMTVDELEKR 656

BLAST of CaUC06G125050 vs. NCBI nr
Match: XP_031742149.1 (probable serine/threonine-protein kinase kinX isoform X1 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-18
Identity = 63/84 (75.00%), Postives = 68/84 (80.95%), Query Frame = 0

Query: 1   MNNSDAEEEEDEK-ANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK-DNNNINTKVVGG 60
           M+N D EEEE EK  N    Q V KND SLRQLKK+FKEKLQL+ KK DNNNINTKVVGG
Sbjct: 577 MDNPDVEEEEAEKEQNPKFVQFVVKNDTSLRQLKKLFKEKLQLNNKKMDNNNINTKVVGG 636

Query: 61  GGKVRTALQPVSENRITMDELEKR 83
           G KVRTALQPV ENR+T+DELEKR
Sbjct: 637 GVKVRTALQPVPENRMTVDELEKR 660

BLAST of CaUC06G125050 vs. ExPASy TrEMBL
Match: A0A1S3CT90 (probable beta-tubulin polyglutamylase OS=Cucumis melo OX=3656 GN=LOC103504683 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.3e-22
Identity = 69/86 (80.23%), Postives = 74/86 (86.05%), Query Frame = 0

Query: 1   MNNSDAEEE---EDEKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK-DNNNINTKVV 60
           M+N DAEEE   E  KA CI  QIVEKND+SLRQLKKMFKEKLQL+KKK DNNNINTKVV
Sbjct: 573 MDNLDAEEEDEKEQNKAKCI--QIVEKNDVSLRQLKKMFKEKLQLNKKKMDNNNINTKVV 632

Query: 61  GGGGKVRTALQPVSENRITMDELEKR 83
           GGG KVRTALQPV ENR+T+DELEKR
Sbjct: 633 GGGVKVRTALQPVLENRMTVDELEKR 656

BLAST of CaUC06G125050 vs. ExPASy TrEMBL
Match: A0A5A7UN97 (Putative beta-tubulin polyglutamylase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00410 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.3e-22
Identity = 68/86 (79.07%), Postives = 74/86 (86.05%), Query Frame = 0

Query: 1   MNNSDAEEE---EDEKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK-DNNNINTKVV 60
           M+N DAEEE   E  KA CI  QIVEKND+SLRQLKKMFKE+LQL+KKK DNNNINTKVV
Sbjct: 573 MDNLDAEEEDEKEQNKAKCI--QIVEKNDISLRQLKKMFKEQLQLNKKKMDNNNINTKVV 632

Query: 61  GGGGKVRTALQPVSENRITMDELEKR 83
           GGG KVRTALQPV ENR+T+DELEKR
Sbjct: 633 GGGVKVRTALQPVPENRMTVDELEKR 656

BLAST of CaUC06G125050 vs. ExPASy TrEMBL
Match: A0A0A0KL59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168990 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.8e-19
Identity = 64/84 (76.19%), Postives = 69/84 (82.14%), Query Frame = 0

Query: 1   MNNSDAEEEEDEK-ANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK-DNNNINTKVVGG 60
           M+N DAEEEE EK  N    Q V KND SLRQLKK+FKEKLQL+ KK DNNNINTKVVGG
Sbjct: 110 MDNPDAEEEEAEKEQNPKFVQFVVKNDTSLRQLKKLFKEKLQLNNKKMDNNNINTKVVGG 169

Query: 61  GGKVRTALQPVSENRITMDELEKR 83
           G KVRTALQPV ENR+T+DELEKR
Sbjct: 170 GVKVRTALQPVPENRMTVDELEKR 193

BLAST of CaUC06G125050 vs. ExPASy TrEMBL
Match: A0A6J1K1B1 (FK506-binding protein 5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491508 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.0e-17
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 0

Query: 1   MNNSDAEEE-----EDEKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK--DNNNINT 60
           ++NSD EEE     E +K   I+RQ VEKND+SLRQL+KMFK++LQLSKKK  +N+N NT
Sbjct: 741 IDNSDTEEEDEDHKEQDKEILIQRQNVEKNDVSLRQLRKMFKQQLQLSKKKMDNNDNNNT 800

Query: 61  KVVGGGGKVRTALQPVSENR-ITMDELEKR 83
           KVVGGGGK+RTALQP+ ENR + M+E+EKR
Sbjct: 801 KVVGGGGKLRTALQPLEENRMVAMNEVEKR 830

BLAST of CaUC06G125050 vs. ExPASy TrEMBL
Match: A0A6J1K436 (FK506-binding protein 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491508 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.0e-17
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 0

Query: 1   MNNSDAEEE-----EDEKANCIERQIVEKNDLSLRQLKKMFKEKLQLSKKK--DNNNINT 60
           ++NSD EEE     E +K   I+RQ VEKND+SLRQL+KMFK++LQLSKKK  +N+N NT
Sbjct: 774 IDNSDTEEEDEDHKEQDKEILIQRQNVEKNDVSLRQLRKMFKQQLQLSKKKMDNNDNNNT 833

Query: 61  KVVGGGGKVRTALQPVSENR-ITMDELEKR 83
           KVVGGGGK+RTALQP+ ENR + M+E+EKR
Sbjct: 834 KVVGGGGKLRTALQPLEENRMVAMNEVEKR 863

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038906922.12.7e-2579.55interaptin-like isoform X1 [Benincasa hispida][more]
XP_038906923.12.7e-2579.55interaptin-like isoform X2 [Benincasa hispida][more]
XP_008467303.12.8e-2280.23PREDICTED: probable beta-tubulin polyglutamylase [Cucumis melo][more]
KAA0055115.14.7e-2279.07putative beta-tubulin polyglutamylase [Cucumis melo var. makuwa][more]
XP_031742149.11.1e-1875.00probable serine/threonine-protein kinase kinX isoform X1 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3CT901.3e-2280.23probable beta-tubulin polyglutamylase OS=Cucumis melo OX=3656 GN=LOC103504683 PE... [more]
A0A5A7UN972.3e-2279.07Putative beta-tubulin polyglutamylase OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A0A0KL591.8e-1976.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168990 PE=4 SV=1[more]
A0A6J1K1B15.0e-1764.44FK506-binding protein 5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491... [more]
A0A6J1K4365.0e-1764.44FK506-binding protein 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G125050.1CaUC06G125050.1mRNA