CaUC06G124950 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G124950
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr06: 29749488 .. 29752288 (-)
RNA-Seq ExpressionCaUC06G124950
SyntenyCaUC06G124950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTCATAAATAGGAAGTGAGAAAAGAAGGGGAAAAAATTAAAAAAGTTAAAGAATTCGAGAAGTTCAACCACAGCTTGCCGTATCGTTTTTCACCCGTCGGCGCCCACAAGGGTGAATGGCGAACTCCTGCACGCGGTGATGTCCACGCGACCGACGGCGATATATGTTCTGCAGCGGTTTATGACTTGGGGCGTGAGCACCTACTTCGATCAGTTTCGAATCGGCGTTTCTTTCCTTTTCGTCGAACTTTGACGTTGTCCCACACTCCTTTTGGCTTAAAATCGGATTACCCGCAGTCCATAAGACAAGTTTGGACACTTTTGTATACCAACCAGCAAAGATTGGAGCTCTTTTTGGTAAGATTCAGTGACTATTGTTACTATATTTTTTACTTTCGAATTGTTTTTCAGTGCTCGAATAGATTAAAAGTCCTTGGGACTCTTCTAGTGCTACGTTTGGGTCAATCTCGAAGTATTCAATTAACGTTCAACCAGTATTAACATGCTCTGAATTGCTTTAGATTCGATTAAAGTATGTTAGATCAGTTTTTAACCTATGAAAGCTTTCTGTTTGTAGTTGTGGACTGATTCTTCAACTAAGGTTTATGGTCAAGTTTAGGTAAGAATAATCCATCTTAAAACTCTCATTCTTCAACTAAGGTTTTCGGACTGAGTTTTAGCCCAACCTTGTCTTTATTGTTTAGACTTCGAGGAAGTTGACTCTTGTTCAAGGAAGTGAAGTTTAGATTGAGAATTGTAGGTTGTTGATTGAGCTAAATAGTTTCCACATCTCTTCCAAAATATAAATTTTGATAAAGCTATGTTTTGACTATTGTGGTTTGACAAATGTTTGAAAGTATGCTTTGTATGATTTGAAGTTGATCAAGATTGTTTTGTATGATTTGAAATTTTTTGCTATTTGAAAGTACGTTTTCTGTTTTGGATAATTTGAATTAAAAGTGTTTTGATTGATTTTGAATGTTTATTTTGGCTTTGTTACATATGAAAATTATTGGAAAGTTTGAATGGGTGATTTGATGAATCTCTATTGAATTATTATTTGAAACTGCATATTTTGTTTCAAATGTTCATGAAAGAATTTTGATTGATTTGATAGGGGCTATCTGGACATGCCAAATTTTGTTTTGAGGATTGTATGCTTAGTTTGTAGTAGCAAAATGTGGAGTTGACGGTAAATGATCTGATTGAAACTTATTTGTGAGAAGGCACTTTATAGTGTTTGACATTCCTTTGGAATGAAGATTCGCATATGGATTACACTTACATGACTTCGCACTTAAGTAATTGTAATGAATGTTTTGGTTGATTTTTAATCAACATGTATGAATGAATGAAAGAAAGAATGAATGGTGTTACCAATGGGTAACCGTGTATGTTTGAGCTACTTCAATTATGCATTTTTCCCACTCTGTTAACGAAAGTATTGATTGAAAATATAGAAAGTATTGAAAGTTTTGTTTCAATGGAAGTCTATTTGAATATTTTATTCCATTGAAAGTTTTGTTTTATTGAAGGTCTATTTGATAGTTTTAGATTGAATCGTTTGGTTTTGAAAGTTTATTTGATTGGTAGATGTTGGCTTTGAAAGCACTATTTGTAACAAAGTTTAAAGGGAAGTTTTACAAGGATTTGTTTCTTTGTTTATGAACCTTTTGAAAGAAAATGAACTTCAAAGGTTGATATGAGAATTGTTTATTGAGCATTTTTGTACTCAGTTTTGCTTTTCCAAAATATTTCAAATGAAGGATCAATTGACAATTATGAAAGAAGTCAGTTTGGTATTCTAGCATGAGACATCAAAAGATGTTTCTTTCGGATTTGATAGTTTGTCTTAGAAATCATTTGTATTAATTTGTTTCTGCTGAATTATGTAAGTGTTATGGTTTCAAATTATTTTGTTTTCTGCATTATTAATATAATAGTTAGATTGAAAAGTATGGACTCATTTAATTATTTATCCTCTAGTCTCTAATTTCTTTCTTCCTTCATAGTTCACCATCAAAACTCCAGACTCCTCGGACTGCCATACTTCAGCTGATTTCATCGACTCCCTGTCCGTGTTAGTTACACACTGTTGCCAGCCTTAGCATGCGGCTGCACAAACTCGATTACGAGAACTTCGGTAGGGTATAACAGTTACCAATTCACCAGACATATATCCACACCACGCCTTCTTGTTATCAGTTATAAGCAAGATTACTGGATTTCTAAAGGCGAATCTCGATTGCTGACCAAGGTTTGTAACTTTCACACTAATAGTTTAGTGAACGCTTGATAATATTGTTTGTTATCATTATGCTGGATTGGGGTGGTGGAAATACTTAAACATATATGTCTTTAATTTCAAATCTTAAAATTGTGGAGCATTTGCTTTTAAAGTACATTCTGGATAAGGTGCCAGGCCTTTCTGTTTCTGACAGCGTCCTAACAGAATTCTGATCTGAATTAAAGAAAAAACGAAAACAGAGAGTTTAAATTCTGATCTGAAGGATCATTCAAAGCTGTTTTTGAATTTTAGAGTTTTATATGTCACTTTTAATTTAAAAGATGAAAAAAAAAATCTTTTCCTTATTTGCTCAAGCTTGTGGTTGTTATACAAGAGCAAGATGACTTACATGGATCTTTTTGGATTTCAAGAAACAAGCGGACCATTCTCATTTCACCTACTTCAAGTGTGGGGACACCAACAAATTTACAGACCATACAAGATTACAAGGGCAATACATGTGTGGTCTACTTGAGAAATTCTCATTTGGAAATTGAAGCGATTTGCTAA

mRNA sequence

ATGAGCTTGCCGTATCGTTTTTCACCCGTCGGCGCCCACAAGGGTGAATGGCGAACTCCTGCACGCGGTGATGTCCACGCGACCGACGGCGATATATGTTCTGCAGCGGTTTATGACTTGGGGCGTGAGCACCTACTTCGATCAGTTTCGAATCGGCGTTTCTTTCCTTTTCGTCGAACTTTGACGTTGTCCCACACTCCTTTTGGCTTAAAATCGGATTACCCGCAGTCCATAAGACAAGTTTGGACACTTTTGTATACCAACCAGCAAAGATTGGAGCTCTTTTTGTTCACCATCAAAACTCCAGACTCCTCGGACTGCCATACTTCAGCTGATTTCATCGACTCCCTGTCCGTTTACACACTGTTGCCAGCCTTAGCATGCGGCTGCACAAACTCGATTACGAGAACTTCGGTAGGGTATAACAGTTACCAATTCACCAGACATATATCCACACCACGCCTTCTTGTTATCAGTTATAAGCAAGATTACTGGATTTCTAAAGGCGAATCTCGATTGCTGACCAAGCTTGTGGTTGTTATACAAGAGCAAGATGACTTACATGGATCTTTTTGGATTTCAAGAAACAAGCGGACCATTCTCATTTCACCTACTTCAAGTGTGGGGACACCAACAAATTTACAGACCATACAAGATTACAAGGGCAATACATGTGTGGTCTACTTGAGAAATTCTCATTTGGAAATTGAAGCGATTTGCTAA

Coding sequence (CDS)

ATGAGCTTGCCGTATCGTTTTTCACCCGTCGGCGCCCACAAGGGTGAATGGCGAACTCCTGCACGCGGTGATGTCCACGCGACCGACGGCGATATATGTTCTGCAGCGGTTTATGACTTGGGGCGTGAGCACCTACTTCGATCAGTTTCGAATCGGCGTTTCTTTCCTTTTCGTCGAACTTTGACGTTGTCCCACACTCCTTTTGGCTTAAAATCGGATTACCCGCAGTCCATAAGACAAGTTTGGACACTTTTGTATACCAACCAGCAAAGATTGGAGCTCTTTTTGTTCACCATCAAAACTCCAGACTCCTCGGACTGCCATACTTCAGCTGATTTCATCGACTCCCTGTCCGTTTACACACTGTTGCCAGCCTTAGCATGCGGCTGCACAAACTCGATTACGAGAACTTCGGTAGGGTATAACAGTTACCAATTCACCAGACATATATCCACACCACGCCTTCTTGTTATCAGTTATAAGCAAGATTACTGGATTTCTAAAGGCGAATCTCGATTGCTGACCAAGCTTGTGGTTGTTATACAAGAGCAAGATGACTTACATGGATCTTTTTGGATTTCAAGAAACAAGCGGACCATTCTCATTTCACCTACTTCAAGTGTGGGGACACCAACAAATTTACAGACCATACAAGATTACAAGGGCAATACATGTGTGGTCTACTTGAGAAATTCTCATTTGGAAATTGAAGCGATTTGCTAA

Protein sequence

MSLPYRFSPVGAHKGEWRTPARGDVHATDGDICSAAVYDLGREHLLRSVSNRRFFPFRRTLTLSHTPFGLKSDYPQSIRQVWTLLYTNQQRLELFLFTIKTPDSSDCHTSADFIDSLSVYTLLPALACGCTNSITRTSVGYNSYQFTRHISTPRLLVISYKQDYWISKGESRLLTKLVVVIQEQDDLHGSFWISRNKRTILISPTSSVGTPTNLQTIQDYKGNTCVVYLRNSHLEIEAIC
Homology
[Close]
BLAST of CaUC06G124950 vs. NCBI nr
Match: XP_022921621.1 (uncharacterized protein LOC111429829 isoform X1 [Cucurbita moschata])

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-10
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 190 SFWISRNKRTILISPTSSVGTPTNLQTIQDYKGNTCVVYLRNSHLEIEAIC 241
           S WISR+KR IL SPTS+V  PTNLQT+ DYK N CVVYL NSHL IE IC
Sbjct: 6   SIWISRSKRIILNSPTSTVRAPTNLQTLLDYKRNICVVYLGNSHLGIEVIC 56

[Close]
BLAST of CaUC06G124950 vs. NCBI nr
Match: XP_022987156.1 (uncharacterized protein LOC111484792 isoform X1 [Cucurbita maxima])

HSP 1 Score: 73.2 bits (178), Expect = 3.5e-09
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 190 SFWISRNKRTILISPTSSVGTPTNLQTIQDYKGNTCVVYLRNSHLEIEAI 240
           S WISR+KR IL SPTS+V  PTNLQT+ DYK N CVVYL NSHL IE I
Sbjct: 6   SIWISRSKRIILNSPTSTVRAPTNLQTLLDYKRNICVVYLGNSHLGIEEI 55

[Close]
BLAST of CaUC06G124950 vs. ExPASy TrEMBL
Match: A0A6J1E1W4 (uncharacterized protein LOC111429829 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111429829 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 190 SFWISRNKRTILISPTSSVGTPTNLQTIQDYKGNTCVVYLRNSHLEIEAIC 241
           S WISR+KR IL SPTS+V  PTNLQT+ DYK N CVVYL NSHL IE IC
Sbjct: 6   SIWISRSKRIILNSPTSTVRAPTNLQTLLDYKRNICVVYLGNSHLGIEVIC 56

[Close]
BLAST of CaUC06G124950 vs. ExPASy TrEMBL
Match: A0A6J1JDC3 (uncharacterized protein LOC111484792 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484792 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-09
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 190 SFWISRNKRTILISPTSSVGTPTNLQTIQDYKGNTCVVYLRNSHLEIEAI 240
           S WISR+KR IL SPTS+V  PTNLQT+ DYK N CVVYL NSHL IE I
Sbjct: 6   SIWISRSKRIILNSPTSTVRAPTNLQTLLDYKRNICVVYLGNSHLGIEEI 55

The following BLAST results are available for this feature:
BLAST of CaUC06G124950 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022921621.12.4e-1072.55uncharacterized protein LOC111429829 isoform X1 [Cucurbita moschata][more]
XP_022987156.13.5e-0972.00uncharacterized protein LOC111484792 isoform X1 [Cucurbita maxima][more]
BLAST of CaUC06G124950 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G124950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E1W41.2e-1072.55uncharacterized protein LOC111429829 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1JDC31.7e-0972.00uncharacterized protein LOC111484792 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of CaUC06G124950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G124950.1CaUC06G124950.1mRNA