CaUC06G124800 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G124800
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Exosome complex component RRP4-like protein
Location	Ciama_Chr06: 29664372 .. 29669751 (+)
RNA-Seq Expression	CaUC06G124800
Synteny	CaUC06G124800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGTTTACAGATTTCCTTGAATCACACCCAAAAAATTCGGCTTCAAAAAGCCCGAGAAATGCTCGAGTCTCTCTCTTCAAAGGCCAATTCTGATGCTTCTGTTTTAGTTGCTGATACTCTTCCTCTCAATTACGAGGATGGTGTCCTCAAGTATATAATTCCTCACTATCCTTATATGGAAGCTTATATTGTGTGCTTGCCAGGGGATTATTTGCATTGAGGTATAATTGAAATTTGTATACAGGGGACATGGGACCCTTGACTTGAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGATTGAGCGAGTAAATAAGCTAATCTATGTACGTGCCTTACAATTGTCTGTGCTTCCCTTTCTTTGATTTATTTTAATTATATCTTTTTCTGATGTAATTGTCTGTGCTGGTTGTTAGATATAAACTGGAGGTTGGTGATATCGTGGTGGAACGTGTTTCAGAGGTAAAACCAAATGCTTTTTATTAGTTTTTTTTTTGGTTTTACAAAAATGTAACATAGAGACGTTGGTGAGTAAAATACACGAGAACAATTTATTTGGGAGTCATGGTTAAGATGTTGTAAATAGGAAAATGAGTTACAATGCCTCCCACAACCAGGTTGCTTCAAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCGATGACCTTGCCTGATGGTATTCAGGTTTTAGAGAAATCCCTTTTGGAAATTATGGTACATACTGTTGCACCAGAGGGTAAATTAGTTTTGCAACTGATCTTTCTCCTCCTCTTCTTCTTCTTCCTTTTTTTTTTTTCCCTAAAGATTGGTTGCATTTGTTGTAACTCTAGATTAATTGTAGTATTTTTATTTCTAGAGGAGGCGAACTGCAGTTTATGGACTCAACATGCGGAGCATTTTTTAAGAAAATGATGTTATTTGTGTAAGTTGTATAGCTTTTACTGTCTTATCCAAAAAAGTTCTTTAGCTTTTACATTCACCTATCACCGTCAGAAAGAATATATGGTTTCTCACGTGTCATACGTATAACATAAGATTTTCTCCAATATTTTTACATTTTTGAAAAATTAAACTTTTGATGTTTTTTTCCTAGGGAGGGGCGGACAATCCAATCCTTAGTTAGTCTAAAGGTTTAAACCTTCATGGGTTGACCTAATGGTAAAAAAAAGACATAGTTTTAATAAATGATTAAGAGGTCATGAATTCAATCCATGGCGGCTCCCTACCTAGAATTTAATATTCTACGAGTTTTCTTGACGCCCAAATGTTGTAGGGTCAAGCGGGTTGTCCTGAAAAAAGGAAAAAAGTTAACCAGAAGATTTGATAGACAAAATATTTCTTATTTGTACAACAATTACCTCCTAAATTTAAAGAGAGGGAGAAAATGAATTAAGTAATATACAACAGTAACAATGAGAGAGAGTTTCTTATCCCAAAACAATGAGCGAGAGTAAGGAAACAAATACAAACAAATACAAAGAAAGGAAATTACCGATAAGACAATATCTAAAGAATAAAAGGAAGAAAGTTTCCTATTTTCAATATAGTCAAATGTTGTAGGTTTCAACAATTGTCTTGTAAGAATAGTTGAGGTGTATCCAAATTAACCTAGACACTAATAGATAAAAATAAAATTCGTTCTTACATAGGATAGGATGTGATTGTGGATACCATGGAGTTAGAACCGAAGTCTTTAAGTGTTTCCTACTTGACCATTGGGCCAAGCAGGATGGTTATGGACTTGAAAAATGTGTAGTGCATAGGCTCCGACACATTAGATTGATCGATGCATCTTTGGCATCTTGCCTGGCCGACTTGAAAAATGTGTAGTGCATAGGCTCCGACACATTAGATTGATCGATGCATCTTTGGCATCTTGCCTGGCCGACTTGAAAAATGTGTAGTGCATAGGCTCCGACACATTAGATTGATCGATGCATCTTTGGCATCTTGCCTGGTTTTGGCCAGGTGTCTTAGCTCAAATGCCTTTTTCTTTTGTGCCTTGTTGCTCTTCTCCGAGGTCACAAAATTTTCTTGACTCTCTAATGTTGCGGTAGGCGTCTTTAACTCAAGTGTCTATTTGTGCCTCTTGCCCTTGAGTGCAATTTTAAAAGATCTTTCTTCTACTTTTCTCCCCTTTTACTTTATGCAAGTGATGCAATATATATTCAACATTGCTCCTTTTCTCACCTGTGTGAGGCTCAAGTTGAGCCTTGTGCGTAGTGCAAAGGCTTGAAGAGATGTACATTGGCACTTCAGTTTAACATGCACTATAATTAATAAACACCACTCTCATCCGTAATTGTTCATGCATAATTTTCCACTTAAGAAAAAATAACATCACCACAGCTTTTCTCAGGCAGAAGTACGTGGTTTTCAGCATGATGGACTACACCTTCAAGCAAGAAGCTAGAAGTATGGGAAGGTAAAAAGTCTCTTTCTTAAGCTCCTGGATGTTGATGTAAAACAAAGTAAGTTCTAAAATCAAATGTTTGAATGGCTCTCACATCTTCACTGGTTTCTTAGGAGAGATTCCATAGAAAGATTCTTGATAGCATGTGAATACTGATTGATAGACAAATCTTCCTGGGCAAATTTTAGTGGTTAAAACGAACTGGGGAGATGATTATAAAGGTTTTACACAGGAATAACTGAATAAGGGAGAAAGCCAGGAAGGGATGTCATTAAGGTGAAAAGGCATCAGGATGGAAATATTTAGTGATTATAAAAAGGAGCTAGCAGACGGCTGGGAAGCAAAAATGTAAAAGATAGCAATAGAAAAGTGATTGTAGAGAATGCAAAAGATAAAAATAATAATAAAAATAACAGATCCTCTGCTAAGGCGTGAATGGCTATAACACAATCTTGGAGGGTACCTATATTTGATATGATATCTTTGATGCCATGGTTATTGGTTATTATGTTCCTAATAACTTTTTTGGTATCAGGTCATCCTGTTTCTTTATGACTTTGTGAATAAGATATGTGCATTTGTATCCACAGTTTGGAGCAGTATGGTATTGACTTAATACTTGGATGCAATCGATTTATCTGGATTGGGGAGCATGTTGATTCTACAGAGGACATGATGATAGAAGATCAAGTTGATAAATCTGAACAAAATGGTTCAAAATTTGAAGAAACTTTTGGCAACCAAGTGCAAGAAAGAGTATATACTCCACTAGAGACACGACAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCTTAGGTTTTATAATAACAGTAGAAGTCATAATGGAGACGATTAGTCTAAGTATTTCTGTGAACATGAATGTGCATGAAATGCTTGGTTCGGAGTTCTTTGTCCTCACGGCAGAAAAAGAAGTTGAACGACGTACTTCAAGTAAGAAGAGGGGATGACTTGGTTTTCTTTCAAAATTGTGTGTAATTTGAATCACTCCTAATGTAAAATTTTGTTACGAATCGGTTGATTTGCAAGGGAATTTACTGTTAGAATATTTTGTAGAATTTTAGATCACCACCACTTGGCCTGTATGTAGTACGTGGTTTCATAAATGCGTATTATGCAAATTAATATGGCATTGCAGAAAAGAAATGCCTATTATTATACCTATGACTTCCATTGTTGTTTCATGTGAAGCAGGTCATCCTAACAACATAGAATCACGATGGTGAAGATTGTCATCCAAGAACTCACAAAATGAGCAAAAAGGGGGTTAAGTAAAATCTAGATATAATAATAAACACAGAATGATATAATCTTTAGTTTTCAAACCCAATTAAAATAATATTTGCACAATGTTTACATATGTTGGTCCTGTTGTAGTTTTGAAGATTAAAGTAATGTATTACTACTGCTACTACTTACTACCACTGTACAAGTAAATGGCAATTGGTAAAGGAAAAGGCAACATCTTCATCACGAAGAAAAGTAGGATTGGAAATTGACTTTTAATGAAGTATTTTATTTTTTGGGTCCTTTGTTTTTTTTCTGCTTTTCTCTCTGGAAAATTTAAAATAGATGAGGGAAGAAAAGAGAGGAGAACTTTGAAGGTGTATCTTTCTTTCTGACCCGACTTTTGAAAATGCATAATTCATAAACAAAGGTTTGTGAAAGAAGGTGAGGCCGCTGTTTGGGTTTTCTGCTCATTCATCAAAGTCGCACTTAGGGAGAGCTTTATGTGTCATCTTTCCACTCAACAAAATTAGCTTCCCCCCCTTCCTTAAATCCCACTCACATGCAATCCAAAACCAAACCCATTGTGTGAAGAAAACTTAGACTAATTAATACTCAAAAACTAAATTAAACACAGAGTTAAGTAAAATTCGGACATTAATTATGTGTGGTATGGTAATTATTAAAGTAAAAGAATGGCGTCCCGTCGGCCACCATTTTGGTTATTAAAATGGAAGAAAGAAAGAAAAGTGTAGTTAGAGCGGCTTTATCTCTTTATTCAACATCCCGGATGTGTTATATATATATATATATATATATATATATGAAGAAGTAAGAAGAGAAGTAATTAAGGGAAAGAGAGGATTATATTAGGAAAGAGAATGATGAGAGGATTGCCACCTGGTTTTCGGTTTGAGCCGACGGAAGAAGAACTTGTATTTGAGTATCTTAAATGCAAAGTGTTCTCCTCTGCCTTGCCTGCTTCTATCATTCCAGAGATCAATGGCGTTTGGAATTTGGATCCTTGGGATATTCCTACAGGCGCAGGTAATTTATTCATTAACTATGCTTAATTTTGACTAATTGGTATGTATTTTAAAATTAAAAGAGGTATTTTTGGGATTGTTGTAGGCGGTGGTGGGCGGGAGGAAGAGAAATACATATTCAGCAAGAAGGAGGCGGAGGTGGAGGCGGAGGAATATAACAATAATGATAATATGGGAATAGTTGGATGGAGTCGGAGTGGGTACTGGAAGGCGAGAAGGTGGGAGAAGGAAATAGTAAGTAGTGAAATTGGAGTTCCATTGATGGGGATGAAGAAGACTCTGGATTTCTGTAGCATTGGAAGCAGCAGCGGCAGCAAGAGGAAGACGAAGAAGACGGGGTGGGTGATGCATGAGTACCGCCTTCAACTCCAACCACATTATTCATACTCCAACAATACTAATACTAATTTGGAGAACAACAAGTGGGTTCTTTGCCGAATCTTTTGCAACAAATTCAATGATGATCATATTATTCAACGCCGCCTTCATTATTCTATTTCTTCCACAAACCATCAGGATCACCTCCTCAGCATTACCCCCAACGCCCTCTCCGACGACGATGATTCCGTTTCCTCCACCGCCTCATCCTCTTCCACCTCCGCCGCTACAATCCCCAACCATCCTTTTCCCCCCTTCTAA

mRNA sequence

ATGAGAGGTTTACAGATTTCCTTGAATCACACCCAAAAAATTCGGCTTCAAAAAGCCCGAGAAATGCTCGAGTCTCTCTCTTCAAAGGCCAATTCTGATGCTTCTGTTTTAGTTGCTGATACTCTTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGATTGAGCGAGTAAATAAGCTAATCTATGTACGTGCCTTACAATTATATAAACTGGAGGTTGGTGATATCGTGGTGGAACGTGTTTCAGAGGTTGCTTCAAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCGATGACCTTGCCTGATGGTATTCAGGTTTTAGAGAAATCCCTTTTGGAAATTATGATTAATTGTAGTATTTTTATTTCTAGAGGAGGCGAACTGCAGTTTATGGACTCAACATGCGGAGCATTTTTTAAGAAAATGATGTTATTTGTTTTGGAGCAGTATGGTATTGACTTAATACTTGGATGCAATCGATTTATCTGGATTGGGGAGCATGTTGATTCTACAGAGGACATGATGATAGAAGATCAAGTTGATAAATCTGAACAAAATGGTTTTATAATAACAGTAGAAGTCATAATGGAGACGATTAGTCTAAGTATTTCTGTGAACATGAATGTGCATGAAATGCTTGGTTCGGAGTTCTTTGTCCTCACGGCAGAAAAAGAAGTTGAACGACGTACTTCAAGAAAGAGAATGATGAGAGGATTGCCACCTGGTTTTCGGTTTGAGCCGACGGAAGAAGAACTTGTATTTGAGTATCTTAAATGCAAAGTGTTCTCCTCTGCCTTGCCTGCTTCTATCATTCCAGAGATCAATGGCGTTTGGAATTTGGATCCTTGGGATATTCCTACAGGCGCAGGCGGTGGTGGGCGGGAGGAAGAGAAATACATATTCAGCAAGAAGGAGGCGGAGGTGGAGGCGGAGGAATATAACAATAATGATAATATGGGAATAGTTGGATGGAGTCGGAGTGGGTACTGGAAGGCGAGAAGGTGGGAGAAGGAAATAGTAAGTAGTGAAATTGGAGTTCCATTGATGGGGATGAAGAAGACTCTGGATTTCTGTAGCATTGGAAGCAGCAGCGGCAGCAAGAGGAAGACGAAGAAGACGGGGTGGGTGATGCATGAGTACCGCCTTCAACTCCAACCACATTATTCATACTCCAACAATACTAATACTAATTTGGAGAACAACAAGTGGGTTCTTTGCCGAATCTTTTGCAACAAATTCAATGATGATCATATTATTCAACGCCGCCTTCATTATTCTATTTCTTCCACAAACCATCAGGATCACCTCCTCAGCATTACCCCCAACGCCCTCTCCGACGACGATGATTCCGTTTCCTCCACCGCCTCATCCTCTTCCACCTCCGCCGCTACAATCCCCAACCATCCTTTTCCCCCCTTCTAA

Coding sequence (CDS)

ATGAGAGGTTTACAGATTTCCTTGAATCACACCCAAAAAATTCGGCTTCAAAAAGCCCGAGAAATGCTCGAGTCTCTCTCTTCAAAGGCCAATTCTGATGCTTCTGTTTTAGTTGCTGATACTCTTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGATTGAGCGAGTAAATAAGCTAATCTATGTACGTGCCTTACAATTATATAAACTGGAGGTTGGTGATATCGTGGTGGAACGTGTTTCAGAGGTTGCTTCAAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCGATGACCTTGCCTGATGGTATTCAGGTTTTAGAGAAATCCCTTTTGGAAATTATGATTAATTGTAGTATTTTTATTTCTAGAGGAGGCGAACTGCAGTTTATGGACTCAACATGCGGAGCATTTTTTAAGAAAATGATGTTATTTGTTTTGGAGCAGTATGGTATTGACTTAATACTTGGATGCAATCGATTTATCTGGATTGGGGAGCATGTTGATTCTACAGAGGACATGATGATAGAAGATCAAGTTGATAAATCTGAACAAAATGGTTTTATAATAACAGTAGAAGTCATAATGGAGACGATTAGTCTAAGTATTTCTGTGAACATGAATGTGCATGAAATGCTTGGTTCGGAGTTCTTTGTCCTCACGGCAGAAAAAGAAGTTGAACGACGTACTTCAAGAAAGAGAATGATGAGAGGATTGCCACCTGGTTTTCGGTTTGAGCCGACGGAAGAAGAACTTGTATTTGAGTATCTTAAATGCAAAGTGTTCTCCTCTGCCTTGCCTGCTTCTATCATTCCAGAGATCAATGGCGTTTGGAATTTGGATCCTTGGGATATTCCTACAGGCGCAGGCGGTGGTGGGCGGGAGGAAGAGAAATACATATTCAGCAAGAAGGAGGCGGAGGTGGAGGCGGAGGAATATAACAATAATGATAATATGGGAATAGTTGGATGGAGTCGGAGTGGGTACTGGAAGGCGAGAAGGTGGGAGAAGGAAATAGTAAGTAGTGAAATTGGAGTTCCATTGATGGGGATGAAGAAGACTCTGGATTTCTGTAGCATTGGAAGCAGCAGCGGCAGCAAGAGGAAGACGAAGAAGACGGGGTGGGTGATGCATGAGTACCGCCTTCAACTCCAACCACATTATTCATACTCCAACAATACTAATACTAATTTGGAGAACAACAAGTGGGTTCTTTGCCGAATCTTTTGCAACAAATTCAATGATGATCATATTATTCAACGCCGCCTTCATTATTCTATTTCTTCCACAAACCATCAGGATCACCTCCTCAGCATTACCCCCAACGCCCTCTCCGACGACGATGATTCCGTTTCCTCCACCGCCTCATCCTCTTCCACCTCCGCCGCTACAATCCCCAACCATCCTTTTCCCCCCTTCTAA

Protein sequence

MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVLVADTLPLNYEDGVLKGHGTLDLNGEVVATICGVIERVNKLIYVRALQLYKLEVGDIVVERVSEVASKRWRLDINYSQDAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFISRGGELQFMDSTCGAFFKKMMLFVLEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQNGFIITVEVIMETISLSISVNMNVHEMLGSEFFVLTAEKEVERRTSRKRMMRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPTGAGGGGREEEKYIFSKKEAEVEAEEYNNNDNMGIVGWSRSGYWKARRWEKEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNLENNKWVLCRIFCNKFNDDHIIQRRLHYSISSTNHQDHLLSITPNALSDDDDSVSSTASSSSTSAATIPNHPFPPF

Homology

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BLAST of CaUC06G124800 vs. NCBI nr
Match: TYJ98430.1 (exosome complex component RRP4-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 445.7 bits (1145), Expect = 5.4e-121
Identity = 292/535 (54.58%), Postives = 341/535 (63.74%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVLVADTLPLNYEDGVLKGHGTLDLN 60
           MR + +     ++ RL+ A++ LESLSSKAN DASV V DT+P +YEDGVLKGHGTLDLN
Sbjct: 63  MRPIFLQRLKKRQTRLKNAQKTLESLSSKANYDASVAVGDTVPFSYEDGVLKGHGTLDLN 122

Query: 61  GEVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVSEVASKRWRLDINYSQDAVLM 120
           GEVV TICGV+ERVNKLIYVR+L+  YK E+GDIVV RV+EVA KRWRLDI+YSQDAVLM
Sbjct: 123 GEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLM 182

Query: 121 LSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQFMDSTCGAFFKK 180
           LSSM LPDGIQ    ++ E+ +  SIF                G  LQ      G   + 
Sbjct: 183 LSSMNLPDGIQRRRTAVDELNMR-SIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 242

Query: 181 MMLFV--------------LEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQNG 240
            +L V              LEQYGIDLILGCN FIWIG+HVDST+D MIEDQV+K EQ G
Sbjct: 243 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGKHVDSTQDTMIEDQVNKIEQKG 302

Query: 241 FIITVEVIMETISLSISVNMNVHEMLGSEFFVLTAEKEVERRTSRKRMMRGLPPGFRFEP 300
                           +    +HE + +    L   + + R  +  R++  L        
Sbjct: 303 -----------SKFEGNFGNQMHERVHTP---LETRQNICRTANAIRVLSIL-------- 362

Query: 301 TEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPTGAGGGGREEEKYIFSKKEAE 360
            EEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIP   GG   +EEKY+FSKK   
Sbjct: 363 -EEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGG---DEEKYLFSKK--- 422

Query: 361 VEAEEYNNNDN--MGIVGWSRSGYWKARRWEKEIVSSEIGVPLMGMKKTLDFCSIGSSSG 420
            EAEEYNNN+N   GI+GWS+SGYWKAR  EKEIVSSE GV LMGMK TLDF      + 
Sbjct: 423 -EAEEYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDF-----YTN 482

Query: 421 SKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNLENNKWVLCRIF--CNKFNDDHII---- 480
           + RK KKTGWVMH+YRL + PH        ++   NKWVLC I    NK   DHII    
Sbjct: 483 NIRKMKKTGWVMHQYRL-IIPH--------SHSSTNKWVLCHILSPTNKL-FDHIIHPHR 542

Query: 481 -QRRLHYSISST---------NHQDHLLSITPN-ALSDDD-DSVSSTASSSSTSA 488
            +RRL YSISST          H +H+  IT + A SDD+ DSVSSTASSSSTSA
Sbjct: 543 HRRRLRYSISSTKDENGDDQDEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSA 551

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BLAST of CaUC06G124800 vs. NCBI nr
Match: XP_038879890.1 (NAC domain-containing protein 83-like [Benincasa hispida])

HSP 1 Score: 336.7 bits (862), Expect = 3.5e-88
Identity = 181/255 (70.98%), Postives = 197/255 (77.25%), Query Frame = 0


Query: 261 MRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPT---GAGGG 320
           MRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIP+INGVWNLDPWDIP    G GGG
Sbjct: 1   MRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPDINGVWNLDPWDIPAGGGGVGGG 60

Query: 321 GREEEKYIFSKKEAEVEAEEY--NNNDNMGIVGWSRSGYWKARRWEKEIVSSEIGVPLMG 380
            REEEKY+FSKK A  + +EY  NNN+NMGIVGWSRSGYWKAR WEKEI+SS+IGV L+G
Sbjct: 61  DREEEKYLFSKKAAAEDEQEYVDNNNNNMGIVGWSRSGYWKARGWEKEILSSDIGVRLVG 120

Query: 381 MKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNLENNKWVLCRIFC 440
           MKKTLDF S          TKKTGWVMH+YRLQL+PH S+ +   TNL NN WVLCRIFC
Sbjct: 121 MKKTLDFYS---------NTKKTGWVMHQYRLQLRPHSSHYSAAATNLVNNNWVLCRIFC 180

Query: 441 NK-FNDDHIIQRRLHYSISSTNHQDHLLS---ITPNALSDDDDSVSSTASSSSTSAA--- 499
           NK FN  H+  R LHYSISSTNHQ   L     T  ALSDDDDS+SSTASSSSTSAA   
Sbjct: 181 NKLFNHHHLTHRPLHYSISSTNHQHQDLDHRHCTITALSDDDDSLSSTASSSSTSAAFTD 240

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BLAST of CaUC06G124800 vs. NCBI nr
Match: XP_038879414.1 (exosome complex component RRP4 homolog [Benincasa hispida])

HSP 1 Score: 336.3 bits (861), Expect = 4.6e-88
Identity = 203/316 (64.24%), Postives = 219/316 (69.30%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVLVADTLPLNYEDGVLKGHGTLDLN 60
           MRGLQISLNHTQ IRLQKARE LESLSSKANSDASV+VADT+PLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQISLNHTQNIRLQKARETLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVSEVASKRWRLDINYSQDAVLM 120
           GEVVATICGV+ERVNKLIYVRAL+  YK EVGDIVV RV+EVA KRWRLDINYSQ AVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQYAVLM 120

Query: 121 LSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQFMDSTCGAFFKK 180
           LSSM LPDGIQ    ++ E+ +  SIF                G  LQ      G   + 
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMR-SIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180

Query: 181 MMLFV--------------LEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN- 240
            +L V              LEQYGIDLILGCN FIWIGEHVDSTEDMMIEDQV K+EQ  
Sbjct: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDSTEDMMIEDQVSKAEQER 240

Query: 241 ------------------------GFIITVEVIMETISLSISVNMNVHEMLGSEFFVLTA 264
                                   GFI+TVEVIMET+SLSIS N++VHEMLGSEFFVLTA
Sbjct: 241 VYTPLNTRQNICRTANAIRVLSSLGFIMTVEVIMETVSLSISQNVDVHEMLGSEFFVLTA 300

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BLAST of CaUC06G124800 vs. NCBI nr
Match: XP_038882865.1 (exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882866.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882867.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882868.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 330.9 bits (847), Expect = 1.9e-86
Identity = 199/326 (61.04%), Postives = 222/326 (68.10%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVLVADTLPLNYEDGVLKGHGTLDLN 60
           MRGLQISLNHTQKIRLQ+A+E LESLSSKANSDASV+VADT+PLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQISLNHTQKIRLQRAQERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVSEVASKRWRLDINYSQDAVLM 120
           GEV+ATICGV+ERVNKLIYVRAL+  YK EVGDIVV RV+EVA KRWRLDINYSQDAVLM
Sbjct: 61  GEVIATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQFMDSTCGAFFKK 180
           LSSM LPDGIQ    ++ E+ +  SIF                G  LQ      G   + 
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMR-SIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERG 180

Query: 181 MMLFV--------------LEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN- 240
            +L V              LEQYGIDLILGCN FIWIGEHVD TEDMMI+DQ++KSEQ  
Sbjct: 181 QLLTVPSYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMIDDQINKSEQKG 240

Query: 241 --------------------------------------GFIITVEVIMETISLSISVNMN 260
                                                 GFI+TVEVIME +SLSIS+N++
Sbjct: 241 PKFEGTFENQVQQRVYTPLETRQNICRTANAIRVLSILGFIMTVEVIMEIVSLSISMNID 300

[Close]

BLAST of CaUC06G124800 vs. NCBI nr
Match: XP_038882864.1 (exosome complex component RRP4 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 330.9 bits (847), Expect = 1.9e-86
Identity = 199/326 (61.04%), Postives = 222/326 (68.10%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVLVADTLPLNYEDGVLKGHGTLDLN 60
           MRGLQISLNHTQKIRLQ+A+E LESLSSKANSDASV+VADT+PLNYEDGVLKGHGTLDLN
Sbjct: 38  MRGLQISLNHTQKIRLQRAQERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 97

Query: 61  GEVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVSEVASKRWRLDINYSQDAVLM 120
           GEV+ATICGV+ERVNKLIYVRAL+  YK EVGDIVV RV+EVA KRWRLDINYSQDAVLM
Sbjct: 98  GEVIATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 157

Query: 121 LSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQFMDSTCGAFFKK 180
           LSSM LPDGIQ    ++ E+ +  SIF                G  LQ      G   + 
Sbjct: 158 LSSMNLPDGIQRRRTAVDELNMR-SIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERG 217

Query: 181 MMLFV--------------LEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN- 240
            +L V              LEQYGIDLILGCN FIWIGEHVD TEDMMI+DQ++KSEQ  
Sbjct: 218 QLLTVPSYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMIDDQINKSEQKG 277

Query: 241 --------------------------------------GFIITVEVIMETISLSISVNMN 260
                                                 GFI+TVEVIME +SLSIS+N++
Sbjct: 278 PKFEGTFENQVQQRVYTPLETRQNICRTANAIRVLSILGFIMTVEVIMEIVSLSISMNID 337

[Close]

BLAST of CaUC06G124800 vs. ExPASy Swiss-Prot
Match: Q9ZVT7 (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.0e-62
Identity = 143/320 (44.69%), Postives = 199/320 (62.19%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVLVADTLPLNYEDGVLKGHGTLDLN 60
           MR LQ+ L+ TQK+R ++A E L+SLSS ANSDASV+V D++P+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVSEVASKRWRLDINYSQDAVLM 120
           GE++AT+CGV+ERV+KL+YVR L+  YK EVGDIVV RV EVA KRWR+++N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMTLPDGIQVLEKSLLEIMINCSIFISR--------------GGELQFMDSTCGAFFK 180
           LSSM +PDGIQ    S+ E+ +  +IF+                  +LQ      G   K
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMR-NIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEK 182

Query: 181 KMMLFV--------------LEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDK---- 240
             +L V              +E  GIDLI+GCN FIW+GEHV+  + M I+DQ D+    
Sbjct: 183 GQLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDEEMIS 242

Query: 241 -----SEQN-----------------------GFIITVEVIMETISLSISVNMNVHEMLG 260
                 EQ+                       GF +T+EVIMET++LS S N+++H+MLG
Sbjct: 243 SSSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNIDIHDMLG 302

[Close]

BLAST of CaUC06G124800 vs. ExPASy Swiss-Prot
Match: Q9FY93 (NAC domain-containing protein 83 OS=Arabidopsis thaliana OX=3702 GN=NAC083 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.5e-30
Identity = 92/213 (43.19%), Postives = 116/213 (54.46%), Query Frame = 0


Query: 264 LPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPTGAGGGGREEEK 323
           LPPGFRF PT+EELV +YLK KV SS LPASIIPE + V   DPWD+P     G  E+E+
Sbjct: 14  LPPGFRFHPTDEELVVQYLKRKVCSSPLPASIIPEFD-VCRADPWDLP-----GNLEKER 73

Query: 324 YIFSKKEAEVEAEEYNNNDNMGIVGWSRSGYWKARRWEKEIVSSEIGVPLMGMKKTLDFC 383
           Y FS +EA+      N N +    G   SGYWKA   +K +V+S  G  ++G+KKTL F 
Sbjct: 74  YFFSTREAKYP----NGNRSNRATG---SGYWKATGIDKRVVTSR-GNQIVGLKKTLVFY 133

Query: 384 SIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNLENNKWVLCRIFC-----NKF 443
                 GS     +T W+MHEYRL   P  S     N       WVLCRIF      NK 
Sbjct: 134 KGKPPHGS-----RTDWIMHEYRLSSSPPSSMGPTQN-------WVLCRIFLKKRAGNKN 193

Query: 444 NDDHIIQRRLHYSISSTNHQDHLLSITPNALSD 472
           +DD    R L ++ ++ N  D +  IT +   D
Sbjct: 194 DDDDGDSRNLRHN-NNNNSSDQIEIITTDQTDD 199

[Close]

BLAST of CaUC06G124800 vs. ExPASy Swiss-Prot
Match: O22798 (NAC domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=NAC041 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.6e-25
Identity = 78/189 (41.27%), Postives = 102/189 (53.97%), Query Frame = 0


Query: 251 VERRTS-RKRMMRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWD 310
           +E+R+S + R +  LPPGFRF PT+EELV +YL+ KV    LPAS+IPE + V   DPWD
Sbjct: 1   MEKRSSIKNRGVLRLPPGFRFHPTDEELVVQYLRRKVTGLPLPASVIPETD-VCKSDPWD 60

Query: 311 IPTGAGGGGREEEKYIFSKKEAEVEAEEYNNNDNMGIVGWSRSGYWKARRWEKEIVSSEI 370
           +P     G  E E Y FS +EA+      +N         + SGYWKA   +K+I   ++
Sbjct: 61  LP-----GDCESEMYFFSTREAKYPNGNRSNRS-------TGSGYWKATGLDKQIGKKKL 120

Query: 371 GVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRL-QLQPHYSYSNNTNTNLENNKW 430
              ++GMKKTL F       G      +T WV+HEYRL   Q    Y  N N       W
Sbjct: 121 ---VVGMKKTLVF-----YKGKPPNGTRTNWVLHEYRLVDSQQDSLYGQNMN-------W 161

Query: 431 VLCRIFCNK 438
           VLCR+F  K
Sbjct: 181 VLCRVFLKK 161

[Close]

BLAST of CaUC06G124800 vs. ExPASy Swiss-Prot
Match: Q9LD44 (NAC transcription factor 56 OS=Arabidopsis thaliana OX=3702 GN=NAC056 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 7.0e-23
Identity = 78/213 (36.62%), Postives = 110/213 (51.64%), Query Frame = 0


Query: 264 LPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPTGAGGGGREEEK 323
           LPPGFRF PT+EELV  YLK K  S+ LP +II E++ ++  DPW++P  A  G  E+E 
Sbjct: 17  LPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEVD-LYKFDPWELPAKASFG--EQEW 76

Query: 324 YIFSKKEAEVEAEEYNNNDNMGIVGWSRSGYWKARRWEKEIVSSEIGVPLMGMKKTLDFC 383
           Y FS ++      +Y N         + SGYWKA   +K +++S+ G   +G+KK L F 
Sbjct: 77  YFFSPRD-----RKYPNGARPNRA--ATSGYWKATGTDKPVLASD-GNQKVGVKKALVF- 136

Query: 384 SIGSSSGSKRKTKKTGWVMHEYRL------QLQPHYSYSNNTNTNLENNKWVLCRIFCNK 443
                SG   K  K+ W+MHEYRL         P   + N  N +L  + WVLCRI+   
Sbjct: 137 ----YSGKPPKGVKSDWIMHEYRLIENKPNNRPPGCDFGNKKN-SLRLDDWVLCRIYKKN 196

Query: 444 FNDDHIIQRRLHYSISSTNHQDHLLSITPNALS 471
               H+   + H  I      D++    P +LS
Sbjct: 197 NASRHVDNDKDHDMI------DYIFRKIPPSLS 206

[Close]

BLAST of CaUC06G124800 vs. ExPASy Swiss-Prot
Match: Q9ZNU2 (NAC domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=NAC018 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.6e-22
Identity = 77/213 (36.15%), Postives = 106/213 (49.77%), Query Frame = 0


Query: 264 LPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPTGAGGGGREEEK 323
           LPPGFRF PT+EELV  YLK K  S  LP +II +++ ++  DPW++P  A  G  E+E 
Sbjct: 17  LPPGFRFHPTDEELVIHYLKRKADSVPLPVAIIADVD-LYKFDPWELPAKASFG--EQEW 76

Query: 324 YIFSKKEAEVEAEEYNNNDNMGIVGWSRSGYWKARRWEKEIVSS-EIGVPLMGMKKTLDF 383
           Y FS ++      +Y N         + SGYWKA   +K ++S+   G   +G+KK L F
Sbjct: 77  YFFSPRD-----RKYPNGARPNRA--ATSGYWKATGTDKPVISTGGGGSKKVGVKKALVF 136

Query: 384 CSIGSSSGSKRKTKKTGWVMHEYRL--QLQPHYSYSNNTNTNLENNKWVLCRIFCNKFND 443
                 SG   K  K+ W+MHEYRL      H     N   +L  + WVLCRI+    + 
Sbjct: 137 -----YSGKPPKGVKSDWIMHEYRLTDNKPTHICDFGNKKNSLRLDDWVLCRIYKKNNST 196

Query: 444 DHIIQRRLHYSISSTNHQDHLLSITPNALSDDD 474
                  LH+     +H  H + I      DDD
Sbjct: 197 ASRHHHHLHHIHLDNDHHRHDMMI------DDD 208

[Close]

BLAST of CaUC06G124800 vs. ExPASy TrEMBL
Match: A0A5D3BF59 (Exosome complex component RRP4-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00280 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 2.6e-121
Identity = 292/535 (54.58%), Postives = 341/535 (63.74%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVLVADTLPLNYEDGVLKGHGTLDLN 60
           MR + +     ++ RL+ A++ LESLSSKAN DASV V DT+P +YEDGVLKGHGTLDLN
Sbjct: 63  MRPIFLQRLKKRQTRLKNAQKTLESLSSKANYDASVAVGDTVPFSYEDGVLKGHGTLDLN 122

Query: 61  GEVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVSEVASKRWRLDINYSQDAVLM 120
           GEVV TICGV+ERVNKLIYVR+L+  YK E+GDIVV RV+EVA KRWRLDI+YSQDAVLM
Sbjct: 123 GEVVTTICGVVERVNKLIYVRSLRARYKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLM 182

Query: 121 LSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQFMDSTCGAFFKK 180
           LSSM LPDGIQ    ++ E+ +  SIF                G  LQ      G   + 
Sbjct: 183 LSSMNLPDGIQRRRTAVDELNMR-SIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 242

Query: 181 MMLFV--------------LEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQNG 240
            +L V              LEQYGIDLILGCN FIWIG+HVDST+D MIEDQV+K EQ G
Sbjct: 243 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGKHVDSTQDTMIEDQVNKIEQKG 302

Query: 241 FIITVEVIMETISLSISVNMNVHEMLGSEFFVLTAEKEVERRTSRKRMMRGLPPGFRFEP 300
                           +    +HE + +    L   + + R  +  R++  L        
Sbjct: 303 -----------SKFEGNFGNQMHERVHTP---LETRQNICRTANAIRVLSIL-------- 362

Query: 301 TEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPTGAGGGGREEEKYIFSKKEAE 360
            EEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIP   GG   +EEKY+FSKK   
Sbjct: 363 -EEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPAAGGG---DEEKYLFSKK--- 422

Query: 361 VEAEEYNNNDN--MGIVGWSRSGYWKARRWEKEIVSSEIGVPLMGMKKTLDFCSIGSSSG 420
            EAEEYNNN+N   GI+GWS+SGYWKAR  EKEIVSSE GV LMGMK TLDF      + 
Sbjct: 423 -EAEEYNNNNNGEGGIIGWSKSGYWKARGREKEIVSSENGVALMGMKSTLDF-----YTN 482

Query: 421 SKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNLENNKWVLCRIF--CNKFNDDHII---- 480
           + RK KKTGWVMH+YRL + PH        ++   NKWVLC I    NK   DHII    
Sbjct: 483 NIRKMKKTGWVMHQYRL-IIPH--------SHSSTNKWVLCHILSPTNKL-FDHIIHPHR 542

Query: 481 -QRRLHYSISST---------NHQDHLLSITPN-ALSDDD-DSVSSTASSSSTSA 488
            +RRL YSISST          H +H+  IT + A SDD+ DSVSSTASSSSTSA
Sbjct: 543 HRRRLRYSISSTKDENGDDQDEHDEHVNHITTSTAFSDDEHDSVSSTASSSSTSA 551

[Close]

BLAST of CaUC06G124800 vs. ExPASy TrEMBL
Match: A0A6J1EXY1 (exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC111437483 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 3.3e-84
Identity = 192/325 (59.08%), Postives = 217/325 (66.77%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVLVADTLPLNYEDGVLKGHGTLDLN 60
           MRGLQ+SLN TQKIRLQ+A E LES+SSKANSDASV+VADT+PLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVSEVASKRWRLDINYSQDAVLM 120
           GEVVATICGV+ERVNKLIYVRAL+  YK EVGDI+V RV+EVA KRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMTLPDGIQVLEKSLLEIMINCSI------------FISRGGELQFMDSTCGAFFKKM 180
           LSSM LPDGIQ    ++ E+ +                F   G  LQ      G   +  
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 MLFV--------------LEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN-- 240
           +L V              LEQYGIDLILGCN FIWIGEHVD TEDMM+ED ++KSEQ   
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 -------------------------------------GFIITVEVIMETISLSISVNMNV 260
                                                GFI++VEVIMET+SLSIS+N++V
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

[Close]

BLAST of CaUC06G124800 vs. ExPASy TrEMBL
Match: A0A6J1HGD9 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464056 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 4.3e-84
Identity = 195/326 (59.82%), Postives = 218/326 (66.87%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVLVADTLPLNYEDGVLKGHGTLDLN 60
           MR LQISLN TQKIRLQ+A E+LES+SSKANSDASV+VADT+PLNY+DGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVSEVASKRWRLDINYSQDAVLM 120
           GEVVATICGV+ERVNKLIYVRAL+  YK EVGDI+V RV+EVA KRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 121 LSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQFMDSTCGAFFKK 180
           LSSM LPDGIQ    ++ E+ +  SIF                G  LQ      G   + 
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMR-SIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERG 180

Query: 181 MMLFV--------------LEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN- 240
            +L V              LEQYGIDLI GCN FIWIGEHVD TEDMMIEDQV+KSEQ  
Sbjct: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKG 240

Query: 241 --------------------------------------GFIITVEVIMETISLSISVNMN 260
                                                 GFI+TVEVIMET+SLS S+N+N
Sbjct: 241 SKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 300

[Close]

BLAST of CaUC06G124800 vs. ExPASy TrEMBL
Match: A0A5A7TKA1 (Exosome complex component RRP4-like protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G002510 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.2e-83
Identity = 192/322 (59.63%), Postives = 218/322 (67.70%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVLVADTLPLNYEDGVLKGHGTLDLN 60
           MRGLQ+SLNHTQKIRL++A+E L+SLSSK NSDASV+VADT+PLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVIERVNKLIYVRAL--QLYKLEVGDIVVERVSEVASKRWRLDINYSQDAVL 120
           GEVVA+ICGV+ERVNKLIYVRAL  +LYK EVGDIVV RV+EVA KRWRLDINYSQDAVL
Sbjct: 61  GEVVASICGVVERVNKLIYVRALRARLYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVL 120

Query: 121 MLSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQFMDSTCGAFFK 180
           MLSSM LPDGIQ    ++ E+ +  SIF                G  LQ      G   +
Sbjct: 121 MLSSMNLPDGIQRRRTAVDELNMR-SIFEENDVICAEVRGLQHDGLHLQARSQKYGKLER 180

Query: 181 KMMLFV--------------LEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN 240
             +L V              L+QYGIDLILGCN FIWIGEHVD  ED MIED VDK EQ 
Sbjct: 181 GQLLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQK 240

Query: 241 ----------------------------------GFIITVEVIMETISLSISVNMNVHEM 260
                                             GFI+TVEVIME ++LSIS+N++VHEM
Sbjct: 241 ALKFEGTVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDVHEM 300

[Close]

BLAST of CaUC06G124800 vs. ExPASy TrEMBL
Match: A0A6J1K7S0 (exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490943 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 2.8e-83
Identity = 191/325 (58.77%), Postives = 216/325 (66.46%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVLVADTLPLNYEDGVLKGHGTLDLN 60
           MRGLQ+SLN TQKIRLQ+A E LES+SSKANSDASV+VADT+PLNYEDGVLKGHGTLDL 
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 61  GEVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVSEVASKRWRLDINYSQDAVLM 120
           GEVVATICGV+ERVNKLIYVRAL+  YK EVGDI+V RV+EVA KRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMTLPDGIQVLEKSLLEIMINCSI------------FISRGGELQFMDSTCGAFFKKM 180
           LSSM LPDGIQ    ++ E+ +                F   G  LQ      G   +  
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 MLFV--------------LEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN-- 240
           +L V              LEQYGIDLILGCN FIWIGEHVD TEDMM+ED ++KSEQ   
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 -------------------------------------GFIITVEVIMETISLSISVNMNV 260
                                                GFI++VEVIMET+SLSIS+N++V
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

[Close]

BLAST of CaUC06G124800 vs. TAIR 10
Match: AT1G03360.1 (ribosomal RNA processing 4 )

HSP 1 Score: 241.5 bits (615), Expect = 1.4e-63
Identity = 143/320 (44.69%), Postives = 199/320 (62.19%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVLVADTLPLNYEDGVLKGHGTLDLN 60
           MR LQ+ L+ TQK+R ++A E L+SLSS ANSDASV+V D++P+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVSEVASKRWRLDINYSQDAVLM 120
           GE++AT+CGV+ERV+KL+YVR L+  YK EVGDIVV RV EVA KRWR+++N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMTLPDGIQVLEKSLLEIMINCSIFISR--------------GGELQFMDSTCGAFFK 180
           LSSM +PDGIQ    S+ E+ +  +IF+                  +LQ      G   K
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMR-NIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEK 182

Query: 181 KMMLFV--------------LEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDK---- 240
             +L V              +E  GIDLI+GCN FIW+GEHV+  + M I+DQ D+    
Sbjct: 183 GQLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDEEMIS 242

Query: 241 -----SEQN-----------------------GFIITVEVIMETISLSISVNMNVHEMLG 260
                 EQ+                       GF +T+EVIMET++LS S N+++H+MLG
Sbjct: 243 SSSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNIDIHDMLG 302

[Close]

BLAST of CaUC06G124800 vs. TAIR 10
Match: AT5G13180.1 (NAC domain containing protein 83 )

HSP 1 Score: 134.4 bits (337), Expect = 2.5e-31
Identity = 92/213 (43.19%), Postives = 116/213 (54.46%), Query Frame = 0


Query: 264 LPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPTGAGGGGREEEK 323
           LPPGFRF PT+EELV +YLK KV SS LPASIIPE + V   DPWD+P     G  E+E+
Sbjct: 14  LPPGFRFHPTDEELVVQYLKRKVCSSPLPASIIPEFD-VCRADPWDLP-----GNLEKER 73

Query: 324 YIFSKKEAEVEAEEYNNNDNMGIVGWSRSGYWKARRWEKEIVSSEIGVPLMGMKKTLDFC 383
           Y FS +EA+      N N +    G   SGYWKA   +K +V+S  G  ++G+KKTL F 
Sbjct: 74  YFFSTREAKYP----NGNRSNRATG---SGYWKATGIDKRVVTSR-GNQIVGLKKTLVFY 133

Query: 384 SIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNLENNKWVLCRIFC-----NKF 443
                 GS     +T W+MHEYRL   P  S     N       WVLCRIF      NK 
Sbjct: 134 KGKPPHGS-----RTDWIMHEYRLSSSPPSSMGPTQN-------WVLCRIFLKKRAGNKN 193

Query: 444 NDDHIIQRRLHYSISSTNHQDHLLSITPNALSD 472
           +DD    R L ++ ++ N  D +  IT +   D
Sbjct: 194 DDDDGDSRNLRHN-NNNNSSDQIEIITTDQTDD 199

[Close]

BLAST of CaUC06G124800 vs. TAIR 10
Match: AT2G33480.1 (NAC domain containing protein 41 )

HSP 1 Score: 118.2 bits (295), Expect = 1.8e-26
Identity = 78/189 (41.27%), Postives = 102/189 (53.97%), Query Frame = 0


Query: 251 VERRTS-RKRMMRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWD 310
           +E+R+S + R +  LPPGFRF PT+EELV +YL+ KV    LPAS+IPE + V   DPWD
Sbjct: 1   MEKRSSIKNRGVLRLPPGFRFHPTDEELVVQYLRRKVTGLPLPASVIPETD-VCKSDPWD 60

Query: 311 IPTGAGGGGREEEKYIFSKKEAEVEAEEYNNNDNMGIVGWSRSGYWKARRWEKEIVSSEI 370
           +P     G  E E Y FS +EA+      +N         + SGYWKA   +K+I   ++
Sbjct: 61  LP-----GDCESEMYFFSTREAKYPNGNRSNRS-------TGSGYWKATGLDKQIGKKKL 120

Query: 371 GVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRL-QLQPHYSYSNNTNTNLENNKW 430
              ++GMKKTL F       G      +T WV+HEYRL   Q    Y  N N       W
Sbjct: 121 ---VVGMKKTLVF-----YKGKPPNGTRTNWVLHEYRLVDSQQDSLYGQNMN-------W 161

Query: 431 VLCRIFCNK 438
           VLCR+F  K
Sbjct: 181 VLCRVFLKK 161

[Close]

BLAST of CaUC06G124800 vs. TAIR 10
Match: AT2G33480.2 (NAC domain containing protein 41 )

HSP 1 Score: 118.2 bits (295), Expect = 1.8e-26
Identity = 76/188 (40.43%), Postives = 103/188 (54.79%), Query Frame = 0


Query: 251 VERRTS-RKRMMRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWD 310
           +E+R+S + R +  LPPGFRF PT+EELV +YL+ KV    LPAS+IPE + V   DPWD
Sbjct: 1   MEKRSSIKNRGVLRLPPGFRFHPTDEELVVQYLRRKVTGLPLPASVIPETD-VCKSDPWD 60

Query: 311 IPTGAGGGGREEEKYIFSKKEAEVEAEEYNNNDNMGIVGWSRSGYWKARRWEKEIVSSEI 370
           +P     G  E E Y FS +EA+      +N         + SGYWKA   +K+I   ++
Sbjct: 61  LP-----GDCESEMYFFSTREAKYPNGNRSNRS-------TGSGYWKATGLDKQIGKKKL 120

Query: 371 GVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNLENNKWV 430
              ++GMKKTL F       G      +T WV+HEYRL         ++   +L N  WV
Sbjct: 121 ---VVGMKKTLVF-----YKGKPPNGTRTNWVLHEYRL--------VDSQQDSLYNMNWV 159

Query: 431 LCRIFCNK 438
           LCR+F  K
Sbjct: 181 LCRVFLKK 159

[Close]

BLAST of CaUC06G124800 vs. TAIR 10
Match: AT3G15510.1 (NAC domain containing protein 2 )

HSP 1 Score: 110.2 bits (274), Expect = 5.0e-24
Identity = 78/213 (36.62%), Postives = 110/213 (51.64%), Query Frame = 0


Query: 264 LPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEINGVWNLDPWDIPTGAGGGGREEEK 323
           LPPGFRF PT+EELV  YLK K  S+ LP +II E++ ++  DPW++P  A  G  E+E 
Sbjct: 17  LPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEVD-LYKFDPWELPAKASFG--EQEW 76

Query: 324 YIFSKKEAEVEAEEYNNNDNMGIVGWSRSGYWKARRWEKEIVSSEIGVPLMGMKKTLDFC 383
           Y FS ++      +Y N         + SGYWKA   +K +++S+ G   +G+KK L F 
Sbjct: 77  YFFSPRD-----RKYPNGARPNRA--ATSGYWKATGTDKPVLASD-GNQKVGVKKALVF- 136

Query: 384 SIGSSSGSKRKTKKTGWVMHEYRL------QLQPHYSYSNNTNTNLENNKWVLCRIFCNK 443
                SG   K  K+ W+MHEYRL         P   + N  N +L  + WVLCRI+   
Sbjct: 137 ----YSGKPPKGVKSDWIMHEYRLIENKPNNRPPGCDFGNKKN-SLRLDDWVLCRIYKKN 196

Query: 444 FNDDHIIQRRLHYSISSTNHQDHLLSITPNALS 471
               H+   + H  I      D++    P +LS
Sbjct: 197 NASRHVDNDKDHDMI------DYIFRKIPPSLS 206

The following BLAST results are available for this feature:

BLAST of CaUC06G124800 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98430.1	5.4e-121	54.58	exosome complex component RRP4-like protein [Cucumis melo var. makuwa]	[more]
XP_038879890.1	3.5e-88	70.98	NAC domain-containing protein 83-like [Benincasa hispida]	[more]
XP_038879414.1	4.6e-88	64.24	exosome complex component RRP4 homolog [Benincasa hispida]	[more]
XP_038882865.1	1.9e-86	61.04	exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882...	[more]
XP_038882864.1	1.9e-86	61.04	exosome complex component RRP4 homolog isoform X1 [Benincasa hispida]	[more]

BLAST of CaUC06G124800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVT7	2.0e-62	44.69	Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 P...	[more]
Q9FY93	3.5e-30	43.19	NAC domain-containing protein 83 OS=Arabidopsis thaliana OX=3702 GN=NAC083 PE=1 ...	[more]
O22798	2.6e-25	41.27	NAC domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=NAC041 PE=2 ...	[more]
Q9LD44	7.0e-23	36.62	NAC transcription factor 56 OS=Arabidopsis thaliana OX=3702 GN=NAC056 PE=2 SV=1	[more]
Q9ZNU2	1.6e-22	36.15	NAC domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=NAC018 PE=2 ...	[more]

BLAST of CaUC06G124800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BF59	2.6e-121	54.58	Exosome complex component RRP4-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1EXY1	3.3e-84	59.08	exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1HGD9	4.3e-84	59.82	exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A5A7TKA1	2.2e-83	59.63	Exosome complex component RRP4-like protein isoform X2 OS=Cucumis melo var. maku...	[more]
A0A6J1K7S0	2.8e-83	58.77	exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114909...	[more]

BLAST of CaUC06G124800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03360.1	1.4e-63	44.69	ribosomal RNA processing 4	[more]
AT5G13180.1	2.5e-31	43.19	NAC domain containing protein 83	[more]
AT2G33480.1	1.8e-26	41.27	NAC domain containing protein 41	[more]
AT2G33480.2	1.8e-26	40.43	NAC domain containing protein 41	[more]
AT3G15510.1	5.0e-24	36.62	NAC domain containing protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 265..407 e-value: 7.9E-25 score: 88.2
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 264..436 score: 37.799107
None	No IPR available	GENE3D	2.40.50.100		coord: 31..86 e-value: 1.9E-12 score: 48.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 472..498
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 472..491
None	No IPR available	PANTHER	PTHR21321:SF4	EXOSOME COMPLEX COMPONENT RRP4	coord: 11..131
None	No IPR available	PANTHER	PTHR21321:SF4	EXOSOME COMPLEX COMPONENT RRP4	coord: 169..256
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 44..82
IPR036093	NAC domain superfamily	GENE3D	2.170.150.80	NAC domain	coord: 273..439 e-value: 7.2E-32 score: 112.3
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 257..435
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 169..256 coord: 11..131
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 170..257
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 85..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G124800.1	CaUC06G124800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003723	RNA binding