CaUC06G124010 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G124010
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr06: 29070904 .. 29071984 (+)
RNA-Seq ExpressionCaUC06G124010
SyntenyCaUC06G124010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGACGACGAAAAAAAGAAAAAAAGCGAAAACAGAACAAAATAGTTTTCAGTTTTGGCTTGTGATTAATTGATTGTTTGAAGATAGCTTTAAAAATTTTCGAATTAATTCATTTGTGTGTGCTTGAAAAGAAATTGATTAATCCGGCCGGAGTTTTGCAATAGGAGGAATTCTCATTCTTCTCATTCTTAATCTCAATCTTCATTCTTAATATCTCTGTGGCGGTTCCGCCGTACACGGTGGCCGTGAGTCCACCTGAGAACTCAGCGCAATCGGCCGGCCACGTGGCCTTCATTCACAAGTCTGAATGTACATTTTTGTTTAAATCTTTTTGCCTTGATTTGCGTTTGCGATACCCTCTGGCGTTAAAGGACGAATCATCTGAACCGCCGCAGCCTCCCCCATTCTTGCCCGACACGTATTCAAATTTCGTCGGCTTCGTCCATACGTGTGCCTCCCATCCGACACGTGTGAGTTCTTTTCCCTTTTTCCTTCACTGTTAAGACTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAATTTAATCTTATTTTTAATTCTCTAACGACCGATTCTTTGTGTTTGAATTTGCAGAGTTTCTCGTGCGGCGTGAGGATTCCGATTCCGGGAGCGGTTGGAATATAATTAAAATAATAATTAATCGAAAATAAGGCAGCGAGGGTAAAGTGGGGTTATGATTAAAAAGGAGCAAGTTGCGTTGTGGTTGGCCATTTATTAATTAACATCACAAGGACAAAGGAAAGGGGGTTGCCTTGGTTTGATTTACGAGAATGCCCTTTTTGGCTTTTGGAGATGACATTAGAACATATAATAAATAATACAAGGCTTAAGTAGTAATTAATTATGTTATGCGGACTTGAACTTGGACGCTTATGAATTGGGAGGGGTCAAAAAGGAATTAGGCCAACCTTGGCTTCAAATAAGCATGAAAAGTTAGATTAATGATTCATAGACTTAGGGGCTTCCGAATAATCAAATCACTAAATTTATTGGAAATGTTAGGATGGAAGAAGTCTCTGGAAACGAAAGTTATGGGTTTCTAAAGAGAATTATTTCTTAT

mRNA sequence

ATGACGACGACGAAAAAAAGAAAAAAAGCGAAAACAGAACAAAATAGTTTTCAGTTTTGGCTTGAGGAATTCTCATTCTTCTCATTCTTAATCTCAATCTTCATTCTTAATATCTCTGTGGCGGTTCCGCCGTACACGGTGGCCGTGAGTCCACCTGAGAACTCAGCGCAATCGGCCGGCCACGTGGCCTTCATTCACAAGTCTGAATGTACATTTTTGTTTAAATCTTTTTGCCTTGATTTGCGTTTGCGATACCCTCTGGCGTTAAAGGACGAATCATCTGAACCGCCGCAGCCTCCCCCATTCTTGCCCGACACGTATTCAAATTTCGTCGGCTTCGTCCATACGTGTGCCTCCCATCCGACACGTAGTTTCTCGTGCGGCGTGAGGATTCCGATTCCGGGAGCGGTTGGAATATAATTAAAATAATAATTAATCGAAAATAAGGCAGCGAGGGTAAAGTGGGGTTATGATTAAAAAGGAGCAAGTTGCGTTGTGGTTGGCCATTTATTAATTAACATCACAAGGACAAAGGAAAGGGGGTTGCCTTGGTTTGATTTACGAGAATGCCCTTTTTGGCTTTTGGAGATGACATTAGAACATATAATAAATAATACAAGGCTTAAGTAGTAATTAATTATGTTATGCGGACTTGAACTTGGACGCTTATGAATTGGGAGGGGTCAAAAAGGAATTAGGCCAACCTTGGCTTCAAATAAGCATGAAAAGTTAGATTAATGATTCATAGACTTAGGGGCTTCCGAATAATCAAATCACTAAATTTATTGGAAATGTTAGGATGGAAGAAGTCTCTGGAAACGAAAGTTATGGGTTTCTAAAGAGAATTATTTCTTAT

Coding sequence (CDS)

ATGACGACGACGAAAAAAAGAAAAAAAGCGAAAACAGAACAAAATAGTTTTCAGTTTTGGCTTGAGGAATTCTCATTCTTCTCATTCTTAATCTCAATCTTCATTCTTAATATCTCTGTGGCGGTTCCGCCGTACACGGTGGCCGTGAGTCCACCTGAGAACTCAGCGCAATCGGCCGGCCACGTGGCCTTCATTCACAAGTCTGAATGTACATTTTTGTTTAAATCTTTTTGCCTTGATTTGCGTTTGCGATACCCTCTGGCGTTAAAGGACGAATCATCTGAACCGCCGCAGCCTCCCCCATTCTTGCCCGACACGTATTCAAATTTCGTCGGCTTCGTCCATACGTGTGCCTCCCATCCGACACGTAGTTTCTCGTGCGGCGTGAGGATTCCGATTCCGGGAGCGGTTGGAATATAA

Protein sequence

MTTTKKRKKAKTEQNSFQFWLEEFSFFSFLISIFILNISVAVPPYTVAVSPPENSAQSAGHVAFIHKSECTFLFKSFCLDLRLRYPLALKDESSEPPQPPPFLPDTYSNFVGFVHTCASHPTRSFSCGVRIPIPGAVGI
Homology
[Close]
BLAST of CaUC06G124010 vs. NCBI nr
Match: KGN63526.1 (hypothetical protein Csa_013781 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-12
Identity = 55/107 (51.40%), Postives = 61/107 (57.01%), Query Frame = 0 

Query: 40  VAVPPYTVAVSPPENSAQSAGHVAFIHKSECTFLFKSF------CLDLRLRYPLALKDES 99
           +AVPP+TVAV+P +    S   V        TFLFKSF      C+ LR  YPLAL+DES
Sbjct: 1   MAVPPHTVAVTPRQRVLHSFSSVVI-----TTFLFKSFSMYALICVALRCDYPLALEDES 60

Query: 100 SEPPQPPPFLPDTYSNF-VGFVHTCASHPTRSFSCGVR---IPIPGA 137
           S PPQPPPF  DTYS       HTCASH    FS       IPIPGA
Sbjct: 61  SAPPQPPPFSSDTYSKLHRASFHTCASH---CFSWRAEYGIIPIPGA 99

[Close]
BLAST of CaUC06G124010 vs. ExPASy TrEMBL
Match: A0A0A0LU65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G002950 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.6e-13
Identity = 55/107 (51.40%), Postives = 61/107 (57.01%), Query Frame = 0 

Query: 40  VAVPPYTVAVSPPENSAQSAGHVAFIHKSECTFLFKSF------CLDLRLRYPLALKDES 99
           +AVPP+TVAV+P +    S   V        TFLFKSF      C+ LR  YPLAL+DES
Sbjct: 1   MAVPPHTVAVTPRQRVLHSFSSVVI-----TTFLFKSFSMYALICVALRCDYPLALEDES 60

Query: 100 SEPPQPPPFLPDTYSNF-VGFVHTCASHPTRSFSCGVR---IPIPGA 137
           S PPQPPPF  DTYS       HTCASH    FS       IPIPGA
Sbjct: 61  SAPPQPPPFSSDTYSKLHRASFHTCASH---CFSWRAEYGIIPIPGA 99

The following BLAST results are available for this feature:
BLAST of CaUC06G124010 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63526.11.1e-1251.40hypothetical protein Csa_013781 [Cucumis sativus][more]
BLAST of CaUC06G124010 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G124010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU655.6e-1351.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G002950 PE=4 SV=1[more]
BLAST of CaUC06G124010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G124010.1CaUC06G124010.1mRNA