CaUC06G123430 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G123430
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description39S ribosomal protein L47, mitochondrial
LocationCiama_Chr06: 28445440 .. 28450088 (+)
RNA-Seq ExpressionCaUC06G123430
SyntenyCaUC06G123430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGTTAAAATTCAAGAATTTGGACTAAGTTATTCTCAATGATTAATTTGTATAGGTTAATATTTATTTTTTTACAAATTTTTATTTATGAGTTTATATAATGTTTAAAATGTCGATATCGTCAGAAATATCGAGATCTTAATTTTACAGAAGTATCAATTAAATTTGGATTTCAATGGATATTTCTGGAAAAATTATAAAGACAAAAAATTCAAAAAATAAATTTAAATTAGTAAATAAACATTTTATGATTTGGTAAATAAGTCAACATGTTATATTTATATTTGAGAATATTTTGTTGCTTAACTATTATGTTTTGTAATTTTAAATGATATAATGAAAATACTGATTTACTCCTTAAAAAGATATTGAACCCCGGAAAATATGAAAATATCGAAGTAGGGTAATATCGTATTACCAATTTTATGACAATTGAAAATTGAGGTGAAATTGATTTTTTTTTTGTTTGTTTGTTTTTTCCCTAATAAAAAACTGTCGGCGTATATTACCCTCGGGTCTCAGGTCACTCGCACTTCGCAGGCTTCCGTCGCCACTGCTTCCTCTTCGCCGCTCGCTCGCCGGAGCCCAGATCGTCGCCGCTTGCAGGAGCCAAGCCTTGTTCGAGCTTCCGTAGTTGGCAACCTTACCTTCTGTGTTCAGTCCGTCGCTCTGTAGTACGACCACGACCTTCAGAATTAGAGGTGAGTGACCTTGATTTTCGTGTTGTTTTGGGACGGAAGTAGTTCTTCTTTGTTGTTCTTCAGCGTCTGTCAACGATGGTTAAGCCTCTGATGCTCTTTGATTGATGATTAACCCCTTCTCCAGTTTCTGATTAGTGATTACGGACTCATGTGCCCTTCTCTGCTGGGATTAGATACGCATTTTCTGTTTGATGTGGGATTCATCGTTGCATAACCGTAACCATATCGTTATTTCCTTTGAAATGGAACGATCTGAATTTATATCCTTCTTTTCCTTGCTCCATTCCACCCATCTCAAAAAATGAAGGTCGAAAAATTGATAAAATAATTTTCTTAGAAAGAGCAGGAGAGAATCATTGGAACGCGTGGAGAACTGGTCCGGTAGGATGCGTTGGTTTGTGGTTATTAGTTCTCTCGCGCTCTCTGGATCAATATGATATGTGGGTCATGATAATGGGTTGCGTTGCATGCATGTCTTGTTGCTTGTTAATGAGAGGCGGCTTAAGAGTGTTGAGTTTCTTGTTTTAGTCACTCTATTTCAAAAATAGAATCAATTGATTTCAAGGATTTTATGGAAAACCAAACTGAACAAAACTAAGACCAGGTTTGATAACCATTTAGAAACCTAATAACACTTCCGAATTGTTTTCTATATTTTGTTTTCTAGATTTTAAGAGTGTTTTGCAAAATCCAAACCAAAATTTGATGATCTAAGAAAAAGTAGTTTTTGTTTTTAGAATTTACTAAGAACCCAAATGCTTACATTGGAAAGATGAAATCCATAATGGTGAGAAAACAAACACAATTTTCAAAATGACAAAAACCAAAAAGTAAAAATCAAATGGATATCCAATGGGGCTTGAACTTATGCACACACCTAATCTTTAGCCTTTTAGGAAGCTAAATTCAAGGTTGGGGTTTTGTTTTCAGATTATTTACTTAGTTGTTTTTTAAATGTATTTAGTCTCACTGTTTTTAGTCTTTGAATTCAAGCAGCATTGGTGCAGCCATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCCACAGGTGCTGCTGCTGCTGCTACAGCTAGGATGGGCTATAACCCGCTTGAGGAGTTTTTTGAGGCAGAGAGAAGTCCCGATGATGACAAACCTGTTGTATATGGTACACTCTCATATTGCTGTCGAACTTTGGTCTTCTTTAACAACCTATAAATTCGTATCTTGGTTCATTCATTTTGAAGAACTTCAAGATACCCCATGTCTGGTCTGATGTAGTGAAATTTGAAACTTGAAGTCATGGAGATTGGAGGGTTCACTAACTCATGGGAATGAATACAAATTGATCAGAGTACTTAAATTGTCATGCATGGAGTCCGAATGCATCTTTTGAGATAACAAAGATTGGAAGTTGGTTACAGAGTACTTAAATCGGTCACTGGGGAATGTGAATTCTTCTTCATTGGTAAAATATCACCAATGTCATATGTTTTATGTTACTGAATTTTATTTGACATAATCGGTGAAATGAGTAATTACAAATACATTTGCTGGACTGATTAGATCTACAAAGCCATAACACTTTGGAGACACCAAAGTACTCCAAAAATATATAGATTTAGTTTCATTATAGTTTGAATGATAACGTGGCTGTTTATAAAAATACCTGATCGGTTGCAAAGTGAAGGTAGGTGCAAGGACATTAAATAGGGATAAGAAGCCATAATTATGTATGGTCTATCTGCATAGCTTCTATACCTGTCAGTGCTTTCTTATTGCTGACACTGTGCTATGTGTGCCATGTGATTAGCCCTTGAAAGTTTATTTGCGCTTTTGGACTTTTTATAATTTGTTCTGTGTATGGTTGCACATGCGATTCAAATGTTATGTTAATGTTTTAGCATGGTATCTATCCGTGTCTGTCAAGGGGCTATTTTCTTTTAGGGATTTTAGATGCATATTTTTCTCATGTCAGTACAGATTTGATCTTTGTACAAAGTTGCTACTTGTGAGGAATAAAGAAGTCTCTCGAAACAACCAAAATCAAAGTATGATCTATGATGCAATAGAAAATTTTATCAGATTTGAAGATTCTCTCTCTTGGTGGCCACCTGCACTACTATATAGGATATGAATATCCTTAAAGTTGTTTGACTCTAACCTTATAGACTTAGATAATTGTGTGAGACCCATTACTCATGGATGACCAAAGAATCTTCATAGTTTGGTGGCCACCCAAATGAGATGATATTAGTATCTTATGAATTTTGCAATATTCTGTAGGATTACCACATGGACATACAGATTGTTCTGGATGCCCGTAAATACATAAGGCACTCGTTTAGTTTGTGGTGCGAGGATTGAAATTTATATTATAAATAAACAGCTGTGGGCCAAAGGACAAAACTCATCTTTCTTGCAAAATTGAAGGGCAGAAAAAACCCATTCGTTAGAAGTTAGAAAAAGTTCTGTAGAATCTTATGGCTGAAATTTTATGCTTTGTTTAATAGACATTAATGAGATTCTCATTGCAATTTATATGCTGTTAGGTCGTAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGCCAGATGCTGAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTAAAAGTCTCAAATTATTTCTAAATTGTAAATATAAGTTCAATCTGCTTTCTATGTTTTGTTGGATCTGTTTCCATCTCCTGCTTCTTCAATTGTGTAATCATAGGCCTGATAATGGCTCTCCTTTCACTACCTTTCCTTGTAATTTAGGTGAGGAAGTCAATGTGTCGAATCAAGCAAGTACTTACCGAGAGAGCCATTGATGAACCAGATCCTCGTAGATCTGCAGAGATGAAGAGGATGATAAACGCTCTGTGATAAGCAAAAGTGCTTCAAAATCAGTCAAGTATGCCGTGGATATCATCATCCCGGAGTCAAAGGAGGAAGAGTTTTCGAGAATGCACATCTGATGCAACATCTTGTCCGTTCAAATTCATTCTGTAATCGAGGATCTCGATAGAAGCCTAGAAATTGTTTGATGCTTTGGAATCTTGTTTTTATCCTTACACTAATCAAAGTTTTGAAGATTGTTCTTATTTGTGCCAAGAACATTGGCCAAGTTTATTCTAGAAGATTTGGAATACACAGCATAGATCTAATTTGTGTGTGTGTGTGGAGCAAGTTGAAAATGAAAGAGTTGACAAAAAGAAAAAAAAAAAAGAAGGAAAAATGGATGCTTTGATGTGCTGTTTGGAAAATGAAAGTATGTCATGAATGTTAGGAGGACCATAAACACAAAGGTAGAATGTGTGTTGATGCTTTGGCTTTGATGATCCTGTGCAGTTGGTCATTCCAATTCTATTCCCTACACAAGGGGGCAAAGCCACATGATTGGATTAGACAATCTTGCTTTTTTGATTAGCTTCTTAACCAAGATTGTTTGTTCATGAGAAGGAAAGATAGAGAGGGCCCCCCACATTCCTCTCTTCCCACTTTGGAAGTGTAGTTTCTTTCTTCTTCTACTGACTTGTTTTGGAGATCTGCCACGTGGCAGGATTTCGTTGGAGGAGTGAGTTTGTAAGGAAAAAAAAAAAGGAAATGATTAATATTGTGTCACCTTTAAAAATAGTAATGTGGGTTGGAATTGAAACAGCTGAAGACAACCTTAAGCTGTTGTGATAGGAAAAAATATTAGATGATGGATTTGGCTGACAGACAGAGGGCCAAGCGTCACCGGCTGGGTAATCTAATCACTCCCGGAGGAAAAAAATGCCCGAAACGGAAAGGAGGAAAGTGGGACCCATATATGACGAAATCAAGCAGCGAAGGAAGGCCCTTGGATTGA

mRNA sequence

ATGTTTGTCACTCGCACTTCGCAGGCTTCCGTCGCCACTGCTTCCTCTTCGCCGCTCGCTCGCCGGAGCCCAGATCGTCGCCGCTTGCAGGAGCCAAGCCTTGTTCGAGCTTCCGTAGTTGGCAACCTTACCTTCTGTGTTCAGTCCGTCGCTCTGAGAGAATCATTGGAACGCGTGGAGAACTGGTCCGGTAGGATGCGTTGGTTTGTGTCTTTGAATTCAAGCAGCATTGGTGCAGCCATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCCACAGGTGCTGCTGCTGCTGCTACAGCTAGGATGGGCTATAACCCGCTTGAGGAGTTTTTTGAGGCAGAGAGAAGTCCCGATGATGACAAACCTGTTGTATATGGTACACTCTCATATTGCTGTCGAACTTTGGATTACCACATGGACATACAGATTGTTCTGGATGCCCGTAAATACATAAGGCACTCGTTTACTGTGGGCCAAAGGACAAAACTCATCTTTCTTGCAAAATTGAAGGGCAGAAAAAACCCATTCGTTAGAAACATTAATGAGATTCTCATTGCAATTTATATGCTGTTAGGTCGTAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGCCAGATGCTGAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTGAGGAAGTCAATGTGTCGAATCAAGCAAGTACTTACCGAGAGAGCCATTGATGAACCAGATCCTCGTAGATCTGCAGAGATGAAGAGGATGATAAACGCTCTACAGAGGGCCAAGCGTCACCGGCTGGGTAATCTAATCACTCCCGGAGGAAAAAAATGCCCGAAACGGAAAGGAGGAAAGTGGGACCCATATATGACGAAATCAAGCAGCGAAGGAAGGCCCTTGGATTGA

Coding sequence (CDS)

ATGTTTGTCACTCGCACTTCGCAGGCTTCCGTCGCCACTGCTTCCTCTTCGCCGCTCGCTCGCCGGAGCCCAGATCGTCGCCGCTTGCAGGAGCCAAGCCTTGTTCGAGCTTCCGTAGTTGGCAACCTTACCTTCTGTGTTCAGTCCGTCGCTCTGAGAGAATCATTGGAACGCGTGGAGAACTGGTCCGGTAGGATGCGTTGGTTTGTGTCTTTGAATTCAAGCAGCATTGGTGCAGCCATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCCACAGGTGCTGCTGCTGCTGCTACAGCTAGGATGGGCTATAACCCGCTTGAGGAGTTTTTTGAGGCAGAGAGAAGTCCCGATGATGACAAACCTGTTGTATATGGTACACTCTCATATTGCTGTCGAACTTTGGATTACCACATGGACATACAGATTGTTCTGGATGCCCGTAAATACATAAGGCACTCGTTTACTGTGGGCCAAAGGACAAAACTCATCTTTCTTGCAAAATTGAAGGGCAGAAAAAACCCATTCGTTAGAAACATTAATGAGATTCTCATTGCAATTTATATGCTGTTAGGTCGTAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGCCAGATGCTGAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTGAGGAAGTCAATGTGTCGAATCAAGCAAGTACTTACCGAGAGAGCCATTGATGAACCAGATCCTCGTAGATCTGCAGAGATGAAGAGGATGATAAACGCTCTACAGAGGGCCAAGCGTCACCGGCTGGGTAATCTAATCACTCCCGGAGGAAAAAAATGCCCGAAACGGAAAGGAGGAAAGTGGGACCCATATATGACGAAATCAAGCAGCGAAGGAAGGCCCTTGGATTGA

Protein sequence

MFVTRTSQASVATASSSPLARRSPDRRRLQEPSLVRASVVGNLTFCVQSVALRESLERVENWSGRMRWFVSLNSSSIGAAMFLTRVFGRTFLAAARSETSSATGAAAAATARMGYNPLEEFFEAERSPDDDKPVVYGTLSYCCRTLDYHMDIQIVLDARKYIRHSFTVGQRTKLIFLAKLKGRKNPFVRNINEILIAIYMLLGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIDEPDPRRSAEMKRMINALQRAKRHRLGNLITPGGKKCPKRKGGKWDPYMTKSSSEGRPLD
Homology
[Close]
BLAST of CaUC06G123430 vs. NCBI nr
Match: XP_038879389.1 (39S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida])

HSP 1 Score: 245.0 bits (624), Expect = 9.3e-61
Identity = 142/210 (67.62%), Postives = 143/210 (68.10%), Query Frame = 0 

Query: 81  MFLTRVFGRTFLAAARSETSSATGAAAAATARMGYNPLEEFFEAERSPDDDKPVVYGTLS 140
           MFLTRVFGRTFLAAARSETSSATG AAAATARMGYNPLEEFFEA+RSPDDDKPVVY    
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATG-AAAATARMGYNPLEEFFEADRSPDDDKPVVY---- 60

Query: 141 YCCRTLDYHMDIQIVLDARKYIRHSFTVGQRTKLIFLAKLKGRKNPFVRNINEILIAIYM 200
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 201 LLGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM 260
             GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM
Sbjct: 121 --GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM 143

Query: 261 CRIKQVLTERAIDEPDPRRSAEMKRMINAL 291
           CRIKQVLTERAIDEPDPRRSAEMKRMINAL
Sbjct: 181 CRIKQVLTERAIDEPDPRRSAEMKRMINAL 143

[Close]
BLAST of CaUC06G123430 vs. NCBI nr
Match: XP_004138121.1 (39S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypothetical protein Csa_013761 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 4.3e-58
Identity = 138/210 (65.71%), Postives = 140/210 (66.67%), Query Frame = 0 

Query: 81  MFLTRVFGRTFLAAARSETSSATGAAAAATARMGYNPLEEFFEAERSPDDDKPVVYGTLS 140
           MFLTRVFGRTFLAAARSETSSAT AAAAATAR GYNPLEEFFEA+RSPDD KPVVY    
Sbjct: 1   MFLTRVFGRTFLAAARSETSSAT-AAAAATARTGYNPLEEFFEADRSPDDGKPVVY---- 60

Query: 141 YCCRTLDYHMDIQIVLDARKYIRHSFTVGQRTKLIFLAKLKGRKNPFVRNINEILIAIYM 200
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 201 LLGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM 260
             GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERIPKVRKSM
Sbjct: 121 --GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSM 143

Query: 261 CRIKQVLTERAIDEPDPRRSAEMKRMINAL 291
           CRIK VLTERAIDEPDPRRSAEMKRMINAL
Sbjct: 181 CRIKHVLTERAIDEPDPRRSAEMKRMINAL 143

[Close]
BLAST of CaUC06G123430 vs. NCBI nr
Match: XP_008453113.1 (PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo])

HSP 1 Score: 234.2 bits (596), Expect = 1.6e-57
Identity = 138/210 (65.71%), Postives = 139/210 (66.19%), Query Frame = 0 

Query: 81  MFLTRVFGRTFLAAARSETSSATGAAAAATARMGYNPLEEFFEAERSPDDDKPVVYGTLS 140
           MFLTRVFGRTFLAAARSETSSAT AAAAATAR GYNPLEEFFEA+RSPDD KPVVY    
Sbjct: 1   MFLTRVFGRTFLAAARSETSSAT-AAAAATARTGYNPLEEFFEADRSPDDGKPVVY---- 60

Query: 141 YCCRTLDYHMDIQIVLDARKYIRHSFTVGQRTKLIFLAKLKGRKNPFVRNINEILIAIYM 200
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 201 LLGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM 260
             GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERI KVRKSM
Sbjct: 121 --GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERISKVRKSM 143

Query: 261 CRIKQVLTERAIDEPDPRRSAEMKRMINAL 291
           CRIK VLTERAIDEPDPRRSAEMKRMINAL
Sbjct: 181 CRIKHVLTERAIDEPDPRRSAEMKRMINAL 143

[Close]
BLAST of CaUC06G123430 vs. NCBI nr
Match: XP_023530690.1 (39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530691.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530692.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530693.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530694.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530695.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530697.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.5 bits (589), Expect = 1.1e-56
Identity = 133/210 (63.33%), Postives = 138/210 (65.71%), Query Frame = 0 

Query: 81  MFLTRVFGRTFLAAARSETSSATGAAAAATARMGYNPLEEFFEAERSPDDDKPVVYGTLS 140
           MFLTR+FGRTFLAAARSE S+AT AAA +TAR GYNPLEEFFE  RSP+DDKPVVY    
Sbjct: 1   MFLTRIFGRTFLAAARSEASAAT-AAAGSTARTGYNPLEEFFEVHRSPEDDKPVVY---- 60

Query: 141 YCCRTLDYHMDIQIVLDARKYIRHSFTVGQRTKLIFLAKLKGRKNPFVRNINEILIAIYM 200
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 201 LLGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM 260
             GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM
Sbjct: 121 --GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM 143

Query: 261 CRIKQVLTERAIDEPDPRRSAEMKRMINAL 291
           CRIKQVLTERAIDEPDPRRSAEMKRM+NAL
Sbjct: 181 CRIKQVLTERAIDEPDPRRSAEMKRMVNAL 143

[Close]
BLAST of CaUC06G123430 vs. NCBI nr
Match: XP_022988417.1 (39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988419.1 39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988420.1 39S ribosomal protein L47, mitochondrial [Cucurbita maxima])

HSP 1 Score: 231.1 bits (588), Expect = 1.4e-56
Identity = 135/210 (64.29%), Postives = 138/210 (65.71%), Query Frame = 0 

Query: 81  MFLTRVFGRTFLAAARSETSSATGAAAAATARMGYNPLEEFFEAERSPDDDKPVVYGTLS 140
           MFLTRV GR FLAAARSETSSA  AAAA+TA  GYNPLEEFFEA+RSPDDDKPVVY    
Sbjct: 1   MFLTRVIGRRFLAAARSETSSA--AAAASTATTGYNPLEEFFEADRSPDDDKPVVY---- 60

Query: 141 YCCRTLDYHMDIQIVLDARKYIRHSFTVGQRTKLIFLAKLKGRKNPFVRNINEILIAIYM 200
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 201 LLGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM 260
             GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM
Sbjct: 121 --GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM 142

Query: 261 CRIKQVLTERAIDEPDPRRSAEMKRMINAL 291
           CRIKQVLTERAIDEPDPRRSAEMKRM+NAL
Sbjct: 181 CRIKQVLTERAIDEPDPRRSAEMKRMVNAL 142

[Close]
BLAST of CaUC06G123430 vs. ExPASy Swiss-Prot
Match: Q8K2Y7 (39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 3.2e-11
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 0 

Query: 203 GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCR 262
           G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV  SM  
Sbjct: 84  GASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQRLPMPSPERLEKVVDSMDN 143

Query: 263 IKQVLTER 271
           + +V+ ER
Sbjct: 144 VDKVVQER 151

[Close]
BLAST of CaUC06G123430 vs. ExPASy Swiss-Prot
Match: Q08DT6 (39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.4e-11
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 0 

Query: 203 GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCR 262
           G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV  SM  
Sbjct: 84  GASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQRLPMPSPERLEKVVDSMDA 143

Query: 263 IKQVLTER 271
           + +V+ ER
Sbjct: 144 LDKVVQER 151

[Close]
BLAST of CaUC06G123430 vs. ExPASy Swiss-Prot
Match: Q9HD33 (39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-10
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 0 

Query: 203 GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCR 262
           G +W   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV  SM  
Sbjct: 82  GAAWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQRLPMPSPERLDKVVDSMDA 141

Query: 263 IKQVLTER 271
           + +V+ ER
Sbjct: 142 LDKVVQER 149

[Close]
BLAST of CaUC06G123430 vs. ExPASy Swiss-Prot
Match: Q2H080 (54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=MRPL4 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-09
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = 0 

Query: 203 GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNP---ERIPKVRKS 262
           GRSW A ELR KSWDDL++LW+V  KE+N + T     N   L F      ER   VR++
Sbjct: 120 GRSWTAEELRHKSWDDLHRLWWVCAKERNRIATANWERNKSGLGFGEAEMRERDNAVRQT 179

Query: 263 MCRIKQVLTERAIDEPDPRRSAE 283
           M  IK VLTER     D  + AE
Sbjct: 180 MRSIKHVLTERFYTWEDAVKVAE 202

[Close]
BLAST of CaUC06G123430 vs. ExPASy Swiss-Prot
Match: P87232 (54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl4 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-08
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 0 

Query: 203 GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP--NPERIPKVRKSM 262
           GR+W A ELR KS++DL+ LWY  L+EKN+L TQR  +    L  P  + ER+  V K+M
Sbjct: 58  GRAWAAEELRWKSFNDLHGLWYNCLREKNLLFTQRAEMKRLQLTIPKASNERVLAVNKTM 117

Query: 263 CRIKQVLTER 271
             IK VL ER
Sbjct: 118 AAIKFVLWER 127

[Close]
BLAST of CaUC06G123430 vs. ExPASy TrEMBL
Match: A0A0A0LS48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.1e-58
Identity = 138/210 (65.71%), Postives = 140/210 (66.67%), Query Frame = 0 

Query: 81  MFLTRVFGRTFLAAARSETSSATGAAAAATARMGYNPLEEFFEAERSPDDDKPVVYGTLS 140
           MFLTRVFGRTFLAAARSETSSAT AAAAATAR GYNPLEEFFEA+RSPDD KPVVY    
Sbjct: 1   MFLTRVFGRTFLAAARSETSSAT-AAAAATARTGYNPLEEFFEADRSPDDGKPVVY---- 60

Query: 141 YCCRTLDYHMDIQIVLDARKYIRHSFTVGQRTKLIFLAKLKGRKNPFVRNINEILIAIYM 200
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 201 LLGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM 260
             GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERIPKVRKSM
Sbjct: 121 --GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSM 143

Query: 261 CRIKQVLTERAIDEPDPRRSAEMKRMINAL 291
           CRIK VLTERAIDEPDPRRSAEMKRMINAL
Sbjct: 181 CRIKHVLTERAIDEPDPRRSAEMKRMINAL 143

[Close]
BLAST of CaUC06G123430 vs. ExPASy TrEMBL
Match: A0A1S3BWK4 (39S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 8.0e-58
Identity = 138/210 (65.71%), Postives = 139/210 (66.19%), Query Frame = 0 

Query: 81  MFLTRVFGRTFLAAARSETSSATGAAAAATARMGYNPLEEFFEAERSPDDDKPVVYGTLS 140
           MFLTRVFGRTFLAAARSETSSAT AAAAATAR GYNPLEEFFEA+RSPDD KPVVY    
Sbjct: 1   MFLTRVFGRTFLAAARSETSSAT-AAAAATARTGYNPLEEFFEADRSPDDGKPVVY---- 60

Query: 141 YCCRTLDYHMDIQIVLDARKYIRHSFTVGQRTKLIFLAKLKGRKNPFVRNINEILIAIYM 200
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 201 LLGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM 260
             GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERI KVRKSM
Sbjct: 121 --GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERISKVRKSM 143

Query: 261 CRIKQVLTERAIDEPDPRRSAEMKRMINAL 291
           CRIK VLTERAIDEPDPRRSAEMKRMINAL
Sbjct: 181 CRIKHVLTERAIDEPDPRRSAEMKRMINAL 143

[Close]
BLAST of CaUC06G123430 vs. ExPASy TrEMBL
Match: A0A6J1JCZ2 (39S ribosomal protein L47, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111485667 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 6.7e-57
Identity = 135/210 (64.29%), Postives = 138/210 (65.71%), Query Frame = 0 

Query: 81  MFLTRVFGRTFLAAARSETSSATGAAAAATARMGYNPLEEFFEAERSPDDDKPVVYGTLS 140
           MFLTRV GR FLAAARSETSSA  AAAA+TA  GYNPLEEFFEA+RSPDDDKPVVY    
Sbjct: 1   MFLTRVIGRRFLAAARSETSSA--AAAASTATTGYNPLEEFFEADRSPDDDKPVVY---- 60

Query: 141 YCCRTLDYHMDIQIVLDARKYIRHSFTVGQRTKLIFLAKLKGRKNPFVRNINEILIAIYM 200
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 201 LLGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM 260
             GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM
Sbjct: 121 --GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM 142

Query: 261 CRIKQVLTERAIDEPDPRRSAEMKRMINAL 291
           CRIKQVLTERAIDEPDPRRSAEMKRM+NAL
Sbjct: 181 CRIKQVLTERAIDEPDPRRSAEMKRMVNAL 142

[Close]
BLAST of CaUC06G123430 vs. ExPASy TrEMBL
Match: A0A6J1I0P6 (39S ribosomal protein L47, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111467922 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 6.7e-57
Identity = 133/210 (63.33%), Postives = 138/210 (65.71%), Query Frame = 0 

Query: 81  MFLTRVFGRTFLAAARSETSSATGAAAAATARMGYNPLEEFFEAERSPDDDKPVVYGTLS 140
           M LTR+FGRTFLAAARSETS+AT AAA +TAR GYNPLEEFFEA RSPDDDKPVVY    
Sbjct: 1   MLLTRIFGRTFLAAARSETSAAT-AAAGSTARTGYNPLEEFFEAHRSPDDDKPVVY---- 60

Query: 141 YCCRTLDYHMDIQIVLDARKYIRHSFTVGQRTKLIFLAKLKGRKNPFVRNINEILIAIYM 200
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 201 LLGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM 260
             GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM
Sbjct: 121 --GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM 143

Query: 261 CRIKQVLTERAIDEPDPRRSAEMKRMINAL 291
           CRIKQVLTERAIDEPDPRR AE+KRM+NAL
Sbjct: 181 CRIKQVLTERAIDEPDPRRCAELKRMVNAL 143

[Close]
BLAST of CaUC06G123430 vs. ExPASy TrEMBL
Match: A0A6J1E238 (39S ribosomal protein L47, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111429866 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 8.8e-57
Identity = 134/210 (63.81%), Postives = 138/210 (65.71%), Query Frame = 0 

Query: 81  MFLTRVFGRTFLAAARSETSSATGAAAAATARMGYNPLEEFFEAERSPDDDKPVVYGTLS 140
           MFLTRV GR FLAAARSETSSAT  AAA+T  MGYNPLEEFFEA+RSP+DDKPVVY    
Sbjct: 1   MFLTRVIGRRFLAAARSETSSAT--AAASTTTMGYNPLEEFFEADRSPNDDKPVVY---- 60

Query: 141 YCCRTLDYHMDIQIVLDARKYIRHSFTVGQRTKLIFLAKLKGRKNPFVRNINEILIAIYM 200
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 201 LLGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM 260
             GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM
Sbjct: 121 --GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM 142

Query: 261 CRIKQVLTERAIDEPDPRRSAEMKRMINAL 291
           CRIKQVLTERAIDEPDPRRSAEMKRM+NAL
Sbjct: 181 CRIKQVLTERAIDEPDPRRSAEMKRMVNAL 142

[Close]
BLAST of CaUC06G123430 vs. TAIR 10
Match: AT1G07830.1 (ribosomal protein L29 family protein )

HSP 1 Score: 193.7 bits (491), Expect = 2.3e-49
Identity = 113/210 (53.81%), Postives = 124/210 (59.05%), Query Frame = 0 

Query: 81  MFLTRVFGRTFLAAARSETSSATGAAAAATARMGYNPLEEFFEAERSPDDDKPVVYGTLS 140
           MFLTR  GR FLAAA + + S T AAAA+T R   NPLEEFFE +RS D+DKPVVY    
Sbjct: 1   MFLTRFVGRRFLAAASARSESTTAAAAASTIRTPTNPLEEFFEFDRSQDEDKPVVY---- 60

Query: 141 YCCRTLDYHMDIQIVLDARKYIRHSFTVGQRTKLIFLAKLKGRKNPFVRNINEILIAIYM 200
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 201 LLGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSM 260
             GR WKASELRLKSWDDL KLWYVLLKEKNMLMTQRQML AQN++FPNPERIPKVR+SM
Sbjct: 121 --GRGWKASELRLKSWDDLQKLWYVLLKEKNMLMTQRQMLQAQNMQFPNPERIPKVRRSM 144

Query: 261 CRIKQVLTERAIDEPDPRRSAEMKRMINAL 291
           CRIK VLTERAI+EPD RRSAEMKRM+N +
Sbjct: 181 CRIKHVLTERAIEEPDSRRSAEMKRMVNGM 144

The following BLAST results are available for this feature:
BLAST of CaUC06G123430 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038879389.19.3e-6167.6239S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S... [more]
XP_004138121.14.3e-5865.7139S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypotheti... [more]
XP_008453113.11.6e-5765.71PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo][more]
XP_023530690.11.1e-5663.3339S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_0... [more]
XP_022988417.11.4e-5664.2939S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988419.1 39S ... [more]
BLAST of CaUC06G123430 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8K2Y73.2e-1152.9439S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1... [more]
Q08DT65.4e-1152.9439S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV... [more]
Q9HD331.2e-1051.4739S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 ... [more]
Q2H0803.9e-0946.9954S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205... [more]
P872321.1e-0850.0054S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972... [more]
BLAST of CaUC06G123430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS482.1e-5865.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=3 SV=1[more]
A0A1S3BWK48.0e-5865.7139S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926... [more]
A0A6J1JCZ26.7e-5764.2939S ribosomal protein L47, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1I0P66.7e-5763.3339S ribosomal protein L47, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1E2388.8e-5763.8139S ribosomal protein L47, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
BLAST of CaUC06G123430 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G07830.12.3e-4953.81ribosomal protein L29 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038340MRP-L47 superfamily, mitochondrialGENE3D6.10.330.20coord: 115..279
e-value: 5.4E-26
score: 92.5
IPR010729Ribosomal protein L47, mitochondrialPFAMPF06984MRP-L47coord: 202..270
e-value: 1.8E-29
score: 101.7
IPR010729Ribosomal protein L47, mitochondrialPANTHERPTHR21183RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATEDcoord: 81..295
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 299..332
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableCDDcd00427Ribosomal_L29_HIPcoord: 209..270
e-value: 4.4843E-12
score: 58.2679
IPR036049Ribosomal protein L29/L35 superfamilySUPERFAMILY46561Ribosomal protein L29 (L29p)coord: 206..273

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G123430.1CaUC06G123430.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005761 mitochondrial ribosome
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome