CaUC06G122870 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G122870
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr06: 27950536 .. 27950889 (+)
RNA-Seq ExpressionCaUC06G122870
SyntenyCaUC06G122870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAATGAGAAAAAAAAGGGAGGGTGGGGCCCTAATCTTATCAGTTCCAGGTGTTGGCTCAGGTGGATGGGTCCCACTTGCTGCTCTTTGCCTAAACCAATGTACAATGTCACTGACAAACAGGTGGATCATTCTCTCTTCTTCTTTCTTCTTTTTTTTTTTTAATAAAAAAGATTTTTATTGAGTGAAATTTGGAATCAGTGGTGGGGTTTAGGTTTTAGGGTTTTGATGATCCCCACCGGATCATTTATCTGTACCGTTCATTTTGATGGGCCCCATATCCTTTTTCTTTTACACATGATTGAAAAAAGGGAAAGGAAAATGGAATCTGGAGAGGTAGAGGGTAAATAA

mRNA sequence

ATGAGTAATGAGAAAAAAAAGGGAGGGTGGGGCCCTAATCTTATCAGTTCCAGGTGTTGGCTCAGGTGGATGGGTCCCACTTGCTGCTCTTTGCCTAAACCAATGTACAATGTCACTGACAAACAGTGGTGGGGTTTAGGTTTTAGGGTTTTGATGATCCCCACCGGATCATTTATCTGTACCGTTCATTTTGATGGGCCCCATATCCTTTTTCTTTTACACATGATTGAAAAAAGGGAAAGGAAAATGGAATCTGGAGAGGTAGAGGGTAAATAA

Coding sequence (CDS)

ATGAGTAATGAGAAAAAAAAGGGAGGGTGGGGCCCTAATCTTATCAGTTCCAGGTGTTGGCTCAGGTGGATGGGTCCCACTTGCTGCTCTTTGCCTAAACCAATGTACAATGTCACTGACAAACAGTGGTGGGGTTTAGGTTTTAGGGTTTTGATGATCCCCACCGGATCATTTATCTGTACCGTTCATTTTGATGGGCCCCATATCCTTTTTCTTTTACACATGATTGAAAAAAGGGAAAGGAAAATGGAATCTGGAGAGGTAGAGGGTAAATAA

Protein sequence

MSNEKKKGGWGPNLISSRCWLRWMGPTCCSLPKPMYNVTDKQWWGLGFRVLMIPTGSFICTVHFDGPHILFLLHMIEKRERKMESGEVEGK
Homology
[Close]
BLAST of CaUC06G122870 vs. NCBI nr
Match: OMP06506.1 (hypothetical protein CCACVL1_01541, partial [Corchorus capsularis])

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 10 WGPNLISSRCWLRWMGPTCCSLPKPMYNVTDKQ 43
          W P+LISSRCWLRW+GP+CCSLPKPMY VTDKQ
Sbjct: 11 WDPHLISSRCWLRWVGPSCCSLPKPMYIVTDKQ 43

[Close]
BLAST of CaUC06G122870 vs. ExPASy TrEMBL
Match: A0A1R3KHC8 (Uncharacterized protein (Fragment) OS=Corchorus capsularis OX=210143 GN=CCACVL1_01541 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.4e-10
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 10 WGPNLISSRCWLRWMGPTCCSLPKPMYNVTDKQ 43
          W P+LISSRCWLRW+GP+CCSLPKPMY VTDKQ
Sbjct: 11 WDPHLISSRCWLRWVGPSCCSLPKPMYIVTDKQ 43

The following BLAST results are available for this feature:
BLAST of CaUC06G122870 vs. NCBI nr
Match NameE-valueIdentityDescription
OMP06506.11.3e-0984.85hypothetical protein CCACVL1_01541, partial [Corchorus capsularis][more]
BLAST of CaUC06G122870 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G122870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1R3KHC86.4e-1084.85Uncharacterized protein (Fragment) OS=Corchorus capsularis OX=210143 GN=CCACVL1_... [more]
BLAST of CaUC06G122870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G122870.1CaUC06G122870.1mRNA