CaUC06G122760 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G122760
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr06: 27845612 .. 27846758 (-)
RNA-Seq Expression	CaUC06G122760
Synteny	CaUC06G122760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTGTGCCATGGGTCTGAAATGTGCTGCAATAGGTTGTCAAATGGCCCCTTCCCTGTCACATTGTGTTGCACAATGAATCCCAAGAACGCCAACATCGCAAGTCTCCCTGTACCAACAAAAAAACACACACTCATTCAAAATACAAAAATCGTAAAAGTATCTCGAAATCATCTAAGACTTTTGTATGAATTACCCATTCTAAGTTCCCTACACAACTAATAACTCGCCTCCCAAAAACAAAAGAAAACTAACTTCTACTTACGGCAAAGCGCACAAAAAATGTAGTAGTGCACTTCAACAAAAAGTATGAAACTTTCATTTATTTATGAGAGTGAGTCATTAATTATTTAGAGAGTTAAATAACGTGTGATTCCTACAAAAATCTCAATTCATAACTGTTATTACGAGTCAGTGAGGCTTTCTTTCATTCTAGAGAACTTACCATTGGCTAATTCCTTCTCTTTGGCTTCAAGAGTGGGGGCAAAATTCAGGGGATTGAAAATCCCACCCGGGTAACCACATTCATTTGGGGGCAAACTGTATTGCTTGAAAATGGGGTCTTGGTTAACGCAGCCAGGGTTTTTAATGTCTTGCCATCTGCGGATTTCGACGTAATGGAAGAGGATAAACTCGATCACGAACAGAGTTGACGATGAGGCGAAGTACTCTGCCTTTCCGGCGTCGTACCATTGAGGGGCGTTGATAATTCCGATCTTCGTGAAAACCTCCGGCAAAAGCATTCCGGCGACACCCAGCATAGCCCACCGCCCATTCACCAGCTCCGCTTGTACGAACCACCTCAAATTCTCTGGGTCTTCCGCTAAACCCAGTGGGTCAAATCCATTGTCGCCCGGAAGACTGTATTTCGTTTAATCAAGTAGGTTAGAGAAAACTCAATTTTACAAATCACATGACAAATTAAGGAGGAGAAAATTTATGGGTATAGTTTTACCTGCCATTTAAGTACGCCGGAGATGGCAGACCAGGCAACCATTCTCCCTTCTTGGCTTCAACCTTGAAAGATGAAGACGACGAAGCAGAGACTGGTTTAACCGAGAGCTCACGGTGGAGTTTACCGGAAGAACCAGAAAGGAATCTGGATCGGGCGGCGCATGGCCGGAAAACGGCGGCGGAAGCTTGA

mRNA sequence

ATGGTTGGGGGCAAAATTCAGGGGATTGAAAATCCCACCCGGGTAACCACATTCATTTGGGGGCAAACTGTATTGCTTGAAAATGGGGTCTTGGTTAACGCAGCCAGGGTTTTTAATGTCTTGCCATCTGCGGATTTCGACGTAATGGAAGAGGATAAACTCGATCACGAACAGATACTCTGCCTTTCCGGCGTCGTACCATTGAGGGGCGTTGATAATTCCGATCTTCGTGAAAACCTCCGGCAAAAGCATTCCGGCGACACCCAGCATAGCCCACCGCCCATTCACCAGCTCCGCTTGTACGAACCACCTCAAATTCTCTGGTTTTACCTGCCATTTAAGTACGCCGGAGATGGCAGACCAGGCAACCATTCTCCCTTCTTGGCTTCAACCTTGAAAGATGAAGACGACGAAGCAGAGACTGGTTTAACCGAGAGCTCACGGTGGAGTTTACCGGAAGAACCAGAAAGGAATCTGGATCGGGCGGCGCATGGCCGGAAAACGGCGGCGGAAGCTTGA

Coding sequence (CDS)

ATGGTTGGGGGCAAAATTCAGGGGATTGAAAATCCCACCCGGGTAACCACATTCATTTGGGGGCAAACTGTATTGCTTGAAAATGGGGTCTTGGTTAACGCAGCCAGGGTTTTTAATGTCTTGCCATCTGCGGATTTCGACGTAATGGAAGAGGATAAACTCGATCACGAACAGATACTCTGCCTTTCCGGCGTCGTACCATTGAGGGGCGTTGATAATTCCGATCTTCGTGAAAACCTCCGGCAAAAGCATTCCGGCGACACCCAGCATAGCCCACCGCCCATTCACCAGCTCCGCTTGTACGAACCACCTCAAATTCTCTGGTTTTACCTGCCATTTAAGTACGCCGGAGATGGCAGACCAGGCAACCATTCTCCCTTCTTGGCTTCAACCTTGAAAGATGAAGACGACGAAGCAGAGACTGGTTTAACCGAGAGCTCACGGTGGAGTTTACCGGAAGAACCAGAAAGGAATCTGGATCGGGCGGCGCATGGCCGGAAAACGGCGGCGGAAGCTTGA

Protein sequence

MVGGKIQGIENPTRVTTFIWGQTVLLENGVLVNAARVFNVLPSADFDVMEEDKLDHEQILCLSGVVPLRGVDNSDLRENLRQKHSGDTQHSPPPIHQLRLYEPPQILWFYLPFKYAGDGRPGNHSPFLASTLKDEDDEAETGLTESSRWSLPEEPERNLDRAAHGRKTAAEA

Homology

[Close]

BLAST of CaUC06G122760 vs. NCBI nr
Match: BAD10637.1 (unknown protein [Oryza sativa Japonica Group])

HSP 1 Score: 118.2 bits (295), Expect = 6.8e-23
Identity = 58/111 (52.25%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 3   GGKIQGIENPTRVTTFIWGQTVLLENGVLVNAARVFNVLPSADFDVMEEDKLDHEQ---- 62
           G +++G+E+   V   +  + V LE+GVLV+AARV +VLP  D  V+E+D+LD EQ    
Sbjct: 51  GLEVEGVEDAAGVAALVRREAVALEDGVLVDAARVLDVLPPPDLHVVEQDELDDEQRRRR 110

Query: 63  --ILCLSGVVPLRGVDNSDLRENLRQKHSGDTQHSPPPIHQLRLYEPPQIL 108
             +  L+GVVPLR VD  DLR++LRQ+H G  QH PPP+HQLRL+EPPQ+L
Sbjct: 111 REVGGLAGVVPLRRVDQPDLRQHLRQQHPGHPQHRPPPVHQLRLHEPPQVL 161

[Close]

BLAST of CaUC06G122760 vs. NCBI nr
Match: ACL54787.1 (unknown [Zea mays])

HSP 1 Score: 109.8 bits (273), Expect = 2.4e-20
Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 3   GGKIQGIENPTRVTTFIWGQTVLLENGVLVNAARVFNVLPSADFDVMEEDKLDHEQ---- 62
           G +++ +E+   V   +  Q V LE+GVLV+AA V +VLP  D  V+++D+LDHEQ    
Sbjct: 81  GREVERVEDAAGVAALVRRQAVALEDGVLVDAAGVLDVLPPPDLHVVKQDELDHEQRRRR 140

Query: 63  --ILCLSGVVPLRGVDNSDLRENLRQKHSGDTQHSPPPIHQLRLYEPPQIL 108
             +L L+GVVPLR VD   L ++LR +H G  QH PPP+HQLRL+ PPQ+L
Sbjct: 141 REVLRLAGVVPLRRVDQPGLGQHLRDQHPGHAQHRPPPVHQLRLHVPPQVL 191

[Close]

BLAST of CaUC06G122760 vs. NCBI nr
Match: KAG6501334.1 (hypothetical protein ZIOFF_041213 [Zingiber officinale])

HSP 1 Score: 102.4 bits (254), Expect = 3.9e-18
Identity = 71/186 (38.17%), Postives = 104/186 (55.91%), Query Frame = 0


Query: 3   GGKIQGIENPTRVTTFIWGQTVLLENGVLVNAARVFNVLPSADFDVMEEDKLDHE----- 62
           G K++G    + V  FIW Q V  E+ +LV+AA V ++LP +D  V+EE++LD E     
Sbjct: 739 GAKLRG----SGVADFIWRQAVAFEDRILVDAAGVLDLLPPSDLLVVEENELDDEERGVG 798

Query: 63  -QILCLSGVVPLRGVDNSDLRENLRQKHSGDTQHSPPPIHQLRLYEPPQILWFYLPFK-- 122
            ++L L+GVVP R + ++DL ++LR++H    +H P P+ +LRL+EPP +L      K  
Sbjct: 799 DEVLGLAGVVPRRRIYDADLGQDLRKQHPVHAEHGPAPVDELRLHEPPDVLRVLRQSKGV 858

Query: 123 --YAGDGRPGN-HSPF-----LASTLKDEDDEAETGLTESSRWSLPEEPERNLDRAAHGR 173
             +    R G    PF     +ASTLK ED E     T      L + P +NLD   +GR
Sbjct: 859 EPWQTIARGGKARDPFALLGLMASTLKVEDGEHLAVNTLCGGSFLGDPPVKNLDLELNGR 918

[Close]

BLAST of CaUC06G122760 vs. ExPASy TrEMBL
Match: Q6YWJ6 (Uncharacterized protein P0413H11.36 OS=Oryza sativa subsp. japonica OX=39947 GN=P0413H11.36 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.3e-23
Identity = 58/111 (52.25%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 3   GGKIQGIENPTRVTTFIWGQTVLLENGVLVNAARVFNVLPSADFDVMEEDKLDHEQ---- 62
           G +++G+E+   V   +  + V LE+GVLV+AARV +VLP  D  V+E+D+LD EQ    
Sbjct: 51  GLEVEGVEDAAGVAALVRREAVALEDGVLVDAARVLDVLPPPDLHVVEQDELDDEQRRRR 110

Query: 63  --ILCLSGVVPLRGVDNSDLRENLRQKHSGDTQHSPPPIHQLRLYEPPQIL 108
             +  L+GVVPLR VD  DLR++LRQ+H G  QH PPP+HQLRL+EPPQ+L
Sbjct: 111 REVGGLAGVVPLRRVDQPDLRQHLRQQHPGHPQHRPPPVHQLRLHEPPQVL 161

[Close]

BLAST of CaUC06G122760 vs. ExPASy TrEMBL
Match: B8A3N8 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.2e-20
Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 3   GGKIQGIENPTRVTTFIWGQTVLLENGVLVNAARVFNVLPSADFDVMEEDKLDHEQ---- 62
           G +++ +E+   V   +  Q V LE+GVLV+AA V +VLP  D  V+++D+LDHEQ    
Sbjct: 81  GREVERVEDAAGVAALVRRQAVALEDGVLVDAAGVLDVLPPPDLHVVKQDELDHEQRRRR 140

Query: 63  --ILCLSGVVPLRGVDNSDLRENLRQKHSGDTQHSPPPIHQLRLYEPPQIL 108
             +L L+GVVPLR VD   L ++LR +H G  QH PPP+HQLRL+ PPQ+L
Sbjct: 141 REVLRLAGVVPLRRVDQPGLGQHLRDQHPGHAQHRPPPVHQLRLHVPPQVL 191

The following BLAST results are available for this feature:

BLAST of CaUC06G122760 vs. NCBI nr


Match Name	E-value	Identity	Description
BAD10637.1	6.8e-23	52.25	unknown protein [Oryza sativa Japonica Group]	[more]
ACL54787.1	2.4e-20	48.65	unknown [Zea mays]	[more]
KAG6501334.1	3.9e-18	38.17	hypothetical protein ZIOFF_041213 [Zingiber officinale]	[more]

BLAST of CaUC06G122760 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC06G122760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q6YWJ6	3.3e-23	52.25	Uncharacterized protein P0413H11.36 OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
B8A3N8	1.2e-20	48.65	Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1	[more]

BLAST of CaUC06G122760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G122760.1	CaUC06G122760.1	mRNA