CaUC06G120540 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G120540
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr06: 25599529 .. 25600015 (-)
RNA-Seq ExpressionCaUC06G120540
SyntenyCaUC06G120540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATCCTCACATTTTATTTTCTTTTGCCTTCTCTTTACTGTCTTCTATCTTCTTTTAGTGGATCATTTGCATTCTCCACCTCAACCTTTCGTCTCCGAAGGAACACCTGCAAGAAAGTACCTTGGTACATCAATTTCCAATCCCAAATCTGAATACCACAGAGTCAAGGTATGCTAAATCTAAATAAATAGTGACTTCTTTGTTTATTTTCTTTCATTTATTTATTTTAATTCTGAATCTTTCAAGTAACTTTTGCCAATGGATTCCACCACCCAAAACAGGCATTTTTGATACTCTTATTTGTGGTTATGGATATGCCAAAATGCAGGTTCATGAAGATGAGTTTAGTAGACCGTCTGCAAAAGACATTACCTCCAACACACCTGAATATGAAGCAAGTATCGAGAGTTTGGGTGAACTTGTCTACCACACCGACTATCATGGAGTGACAACACATCCAAACCCAACGCCAAAACACCCATAG

mRNA sequence

ATGAGATCCTCACATTTTATTTTCTTTTGCCTTCTCTTTACTGTCTTCTATCTTCTTTTAGTGGATCATTTGCATTCTCCACCTCAACCTTTCGTCTCCGAAGGAACACCTGCAAGAAAGTACCTTGGTACATCAATTTCCAATCCCAAATCTGAATACCACAGAGTCAAGGTTCATGAAGATGAGTTTAGTAGACCGTCTGCAAAAGACATTACCTCCAACACACCTGAATATGAAGCAAGTATCGAGAGTTTGGGTGAACTTGTCTACCACACCGACTATCATGGAGTGACAACACATCCAAACCCAACGCCAAAACACCCATAG

Coding sequence (CDS)

ATGAGATCCTCACATTTTATTTTCTTTTGCCTTCTCTTTACTGTCTTCTATCTTCTTTTAGTGGATCATTTGCATTCTCCACCTCAACCTTTCGTCTCCGAAGGAACACCTGCAAGAAAGTACCTTGGTACATCAATTTCCAATCCCAAATCTGAATACCACAGAGTCAAGGTTCATGAAGATGAGTTTAGTAGACCGTCTGCAAAAGACATTACCTCCAACACACCTGAATATGAAGCAAGTATCGAGAGTTTGGGTGAACTTGTCTACCACACCGACTATCATGGAGTGACAACACATCCAAACCCAACGCCAAAACACCCATAG

Protein sequence

MRSSHFIFFCLLFTVFYLLLVDHLHSPPQPFVSEGTPARKYLGTSISNPKSEYHRVKVHEDEFSRPSAKDITSNTPEYEASIESLGELVYHTDYHGVTTHPNPTPKHP
Homology
[Close]
BLAST of CaUC06G120540 vs. NCBI nr
Match: KAG6589671.1 (hypothetical protein SDJN03_15094, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.2 bits (409), Expect = 2.6e-36
Identity = 80/108 (74.07%), Postives = 90/108 (83.33%), Query Frame = 0 

Query: 1   MRSSHFIFFCLLFTVFYLLLVDHLHSPPQPFVSEGTPARKYLGTSISNPKSEYHRVKVHE 60
           M SSHF+FF LLF +FYLL V  L SPP    S G PARKYLG+S SNP+SE+ +VKVHE
Sbjct: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPP---STGRPARKYLGSSFSNPESEFLKVKVHE 60

Query: 61  DEFSRPSAKDITSNTPEYEASIESLGELVYHTDYHGVTTHPNPTPKHP 109
           DEF+RPSAKDI+SN PEYEASI+ +GELVYH DYHGVTTHPNPTPKHP
Sbjct: 61  DEFNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

[Close]
BLAST of CaUC06G120540 vs. NCBI nr
Match: XP_022921360.1 (uncharacterized protein LOC111429652 [Cucurbita moschata] >KAG7023353.1 hypothetical protein SDJN02_14378, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.6 bits (405), Expect = 7.5e-36
Identity = 79/108 (73.15%), Postives = 90/108 (83.33%), Query Frame = 0 

Query: 1   MRSSHFIFFCLLFTVFYLLLVDHLHSPPQPFVSEGTPARKYLGTSISNPKSEYHRVKVHE 60
           M SSHF+FF LLF +FYLL V  L SPP    S G PARKYLG+S SNP+SE+ +V+VHE
Sbjct: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPP---STGRPARKYLGSSFSNPESEFLKVEVHE 60

Query: 61  DEFSRPSAKDITSNTPEYEASIESLGELVYHTDYHGVTTHPNPTPKHP 109
           DEF+RPSAKDI+SN PEYEASI+ +GELVYH DYHGVTTHPNPTPKHP
Sbjct: 61  DEFNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

[Close]
BLAST of CaUC06G120540 vs. NCBI nr
Match: KGN65505.1 (hypothetical protein Csa_019778 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 7.5e-36
Identity = 81/108 (75.00%), Postives = 86/108 (79.63%), Query Frame = 0 

Query: 1   MRSSHFIFFCLLFTVFYLLLVDHLHSPPQPFVSEGTPARKYLGTSISNPKSEYHRVKVHE 60
           MRSSHFIFFCLLFT FYL  +D LHSPP  F SEG  ARKYLGTS S+        +VHE
Sbjct: 1   MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSH--------EVHE 60

Query: 61  DEFSRPSAKDITSNTPEYEASIESLGELVYHTDYHGVTTHPNPTPKHP 109
           DEF+RPS KD +SNTPEYEASI SLGELVYH DYHGVTTHPNPTPKHP
Sbjct: 61  DEFNRPSPKDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP 100

[Close]
BLAST of CaUC06G120540 vs. NCBI nr
Match: XP_023515382.1 (uncharacterized protein LOC111779554 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.1 bits (396), Expect = 8.3e-35
Identity = 78/108 (72.22%), Postives = 91/108 (84.26%), Query Frame = 0 

Query: 1   MRSSHFIFFCLLFTVFYLLLVDHLHSPPQPFVSEGTPARKYLGTSISNPKSEYHRVKVHE 60
           M SSHF+FF LLF +FYLL V  L SPP P+   G PARKYLG+S SNP+SE+ +V+VH+
Sbjct: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPP-PYT--GRPARKYLGSSFSNPESEFLKVEVHK 60

Query: 61  DEFSRPSAKDITSNTPEYEASIESLGELVYHTDYHGVTTHPNPTPKHP 109
           DEF+RPSAKDI+SN PEYEASI+ +GELVYH DYHGVTTHPNPTPKHP
Sbjct: 61  DEFNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

[Close]
BLAST of CaUC06G120540 vs. NCBI nr
Match: XP_022987350.1 (uncharacterized protein LOC111484929 [Cucurbita maxima])

HSP 1 Score: 156.4 bits (394), Expect = 1.4e-34
Identity = 77/108 (71.30%), Postives = 89/108 (82.41%), Query Frame = 0 

Query: 1   MRSSHFIFFCLLFTVFYLLLVDHLHSPPQPFVSEGTPARKYLGTSISNPKSEYHRVKVHE 60
           M SSHF+FF LLF +FYLL V  L SPP   +S G PARKYLG+  SNP+SE+ +V+VHE
Sbjct: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPP---LSTGRPARKYLGSLFSNPESEFLKVEVHE 60

Query: 61  DEFSRPSAKDITSNTPEYEASIESLGELVYHTDYHGVTTHPNPTPKHP 109
           DE +RPSAKDI+SN PEYEASI+ +GELVYH DYHGVTTHPNPTPKHP
Sbjct: 61  DELNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

[Close]
BLAST of CaUC06G120540 vs. ExPASy TrEMBL
Match: A0A0A0LUD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G427550 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.6e-36
Identity = 81/108 (75.00%), Postives = 86/108 (79.63%), Query Frame = 0 

Query: 1   MRSSHFIFFCLLFTVFYLLLVDHLHSPPQPFVSEGTPARKYLGTSISNPKSEYHRVKVHE 60
           MRSSHFIFFCLLFT FYL  +D LHSPP  F SEG  ARKYLGTS S+        +VHE
Sbjct: 1   MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSH--------EVHE 60

Query: 61  DEFSRPSAKDITSNTPEYEASIESLGELVYHTDYHGVTTHPNPTPKHP 109
           DEF+RPS KD +SNTPEYEASI SLGELVYH DYHGVTTHPNPTPKHP
Sbjct: 61  DEFNRPSPKDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP 100

[Close]
BLAST of CaUC06G120540 vs. ExPASy TrEMBL
Match: A0A6J1E5F1 (uncharacterized protein LOC111429652 OS=Cucurbita moschata OX=3662 GN=LOC111429652 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.6e-36
Identity = 79/108 (73.15%), Postives = 90/108 (83.33%), Query Frame = 0 

Query: 1   MRSSHFIFFCLLFTVFYLLLVDHLHSPPQPFVSEGTPARKYLGTSISNPKSEYHRVKVHE 60
           M SSHF+FF LLF +FYLL V  L SPP    S G PARKYLG+S SNP+SE+ +V+VHE
Sbjct: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPP---STGRPARKYLGSSFSNPESEFLKVEVHE 60

Query: 61  DEFSRPSAKDITSNTPEYEASIESLGELVYHTDYHGVTTHPNPTPKHP 109
           DEF+RPSAKDI+SN PEYEASI+ +GELVYH DYHGVTTHPNPTPKHP
Sbjct: 61  DEFNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

[Close]
BLAST of CaUC06G120540 vs. ExPASy TrEMBL
Match: A0A6J1JGL7 (uncharacterized protein LOC111484929 OS=Cucurbita maxima OX=3661 GN=LOC111484929 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.9e-35
Identity = 77/108 (71.30%), Postives = 89/108 (82.41%), Query Frame = 0 

Query: 1   MRSSHFIFFCLLFTVFYLLLVDHLHSPPQPFVSEGTPARKYLGTSISNPKSEYHRVKVHE 60
           M SSHF+FF LLF +FYLL V  L SPP   +S G PARKYLG+  SNP+SE+ +V+VHE
Sbjct: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPP---LSTGRPARKYLGSLFSNPESEFLKVEVHE 60

Query: 61  DEFSRPSAKDITSNTPEYEASIESLGELVYHTDYHGVTTHPNPTPKHP 109
           DE +RPSAKDI+SN PEYEASI+ +GELVYH DYHGVTTHPNPTPKHP
Sbjct: 61  DELNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

[Close]
BLAST of CaUC06G120540 vs. ExPASy TrEMBL
Match: A0A5D3DYI5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002010 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.6e-31
Identity = 70/89 (78.65%), Postives = 78/89 (87.64%), Query Frame = 0 

Query: 21  VDHLHSPPQPFVSEGTPARKYLGTSISN-PKSEYHRVKVHEDEFSRPSAKDITSNTPEYE 80
           +D LHSPP+ F SEG PARKYLGTS SN PKSEYH  +VHEDEF+RPS KD++SNTPE+E
Sbjct: 1   MDLLHSPPRLFTSEGRPARKYLGTSFSNYPKSEYH--EVHEDEFNRPSPKDMSSNTPEHE 60

Query: 81  ASIESLGELVYHTDYHGVTTHPNPTPKHP 109
           ASI SLGEL+YH DYHGVTTHPNPTPKHP
Sbjct: 61  ASINSLGELIYHIDYHGVTTHPNPTPKHP 87

[Close]
BLAST of CaUC06G120540 vs. ExPASy TrEMBL
Match: A0A438CZ59 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_103994 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.1e-12
Identity = 51/114 (44.74%), Postives = 64/114 (56.14%), Query Frame = 0 

Query: 1   MRSSHFIFFCLLFTVFYLLLVDHLHSPPQPFVSEG---TPARKY---LGTSISNPKSEYH 60
           M+SS  +  CLL T FYLL   H HS      S      P R++   L  S SN K+EY 
Sbjct: 3   MKSSRILLLCLLTTAFYLL---HQHSSIASTSSSSLNFLPGRRHVRELSMSFSNRKNEYQ 62

Query: 61  RVKVHEDEFSRPSAKDITSNTPEYEASIESLGELVYHTDYHGVTTHPNPTPKHP 109
            ++  +DE  +PS     S   E+ +S E+L E+VYH DYHGV THP PTPKHP
Sbjct: 63  EIQDVDDEM-KPSTMQEDSIAVEHRSSSENLEEIVYHIDYHGVMTHPTPTPKHP 112

The following BLAST results are available for this feature:
BLAST of CaUC06G120540 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6589671.12.6e-3674.07hypothetical protein SDJN03_15094, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022921360.17.5e-3673.15uncharacterized protein LOC111429652 [Cucurbita moschata] >KAG7023353.1 hypothet... [more]
KGN65505.17.5e-3675.00hypothetical protein Csa_019778 [Cucumis sativus][more]
XP_023515382.18.3e-3572.22uncharacterized protein LOC111779554 [Cucurbita pepo subsp. pepo][more]
XP_022987350.11.4e-3471.30uncharacterized protein LOC111484929 [Cucurbita maxima][more]
BLAST of CaUC06G120540 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G120540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUD63.6e-3675.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G427550 PE=4 SV=1[more]
A0A6J1E5F13.6e-3673.15uncharacterized protein LOC111429652 OS=Cucurbita moschata OX=3662 GN=LOC1114296... [more]
A0A6J1JGL76.9e-3571.30uncharacterized protein LOC111484929 OS=Cucurbita maxima OX=3661 GN=LOC111484929... [more]
A0A5D3DYI51.6e-3178.65Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A438CZ592.1e-1244.74Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_103994 PE=4 SV=1[more]
BLAST of CaUC06G120540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G120540.1CaUC06G120540.1mRNA