CaUC06G118860 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G118860
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionGag-Pol polyprotein
LocationCiama_Chr06: 23705163 .. 23705345 (-)
RNA-Seq ExpressionCaUC06G118860
SyntenyCaUC06G118860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCAAAGTTTGAGATTGAGAAGTTCAACGGAACTAATTTCTCATTGTGGAAGTTGAAGATGAAGGCTTTCTTAAGAAAAGACAATTGCCTTGCAGCCATCGATGGGAGCCCGGTGGAGATCACAAAACGGTATGGACGGAAATGCTATTGCAAACATTCATTTAACATTGGCAGATAA

mRNA sequence

ATGGCGGCAAAGTTTGAGATTGAGAAGTTCAACGGAACTAATTTCTCATTGTGGAAGTTGAAGATGAAGGCTTTCTTAAGAAAAGACAATTGCCTTGCAGCCATCGATGGGAGCCCGGTGGAGATCACAAAACGGTATGGACGGAAATGCTATTGCAAACATTCATTTAACATTGGCAGATAA

Coding sequence (CDS)

ATGGCGGCAAAGTTTGAGATTGAGAAGTTCAACGGAACTAATTTCTCATTGTGGAAGTTGAAGATGAAGGCTTTCTTAAGAAAAGACAATTGCCTTGCAGCCATCGATGGGAGCCCGGTGGAGATCACAAAACGGTATGGACGGAAATGCTATTGCAAACATTCATTTAACATTGGCAGATAA

Protein sequence

MAAKFEIEKFNGTNFSLWKLKMKAFLRKDNCLAAIDGSPVEITKRYGRKCYCKHSFNIGR
Homology
[Close]
BLAST of CaUC06G118860 vs. NCBI nr
Match: ACL97383.1 (Gag-Pol polyprotein [Medicago truncatula])

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-11
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 1  MAAKFEIEKFNGTNFSLWKLKMKAFLRKDNCLAAIDGSPVEIT 44
          MAAKFEIEKFNG NFSLWKLK++A LRKDNCL AIDG P +IT
Sbjct: 1  MAAKFEIEKFNGRNFSLWKLKIRAILRKDNCLDAIDGRPADIT 43

[Close]
BLAST of CaUC06G118860 vs. NCBI nr
Match: TYK10895.1 (hypothetical protein E5676_scaffold231G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-11
Identity = 37/43 (86.05%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 1  MAAKFEIEKFNGTNFSLWKLKMKAFLRKDNCLAAIDGSPVEIT 44
          MAAKFEIEKFN TNFSLWKLKMKA LRKDNCL AID  P EIT
Sbjct: 1  MAAKFEIEKFNETNFSLWKLKMKAVLRKDNCLEAIDKRPAEIT 43

[Close]
BLAST of CaUC06G118860 vs. NCBI nr
Match: ACL97384.1 (Gag-Pol polyprotein [Medicago truncatula])

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-11
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 1  MAAKFEIEKFNGTNFSLWKLKMKAFLRKDNCLAAIDGSPVEIT 44
          MAAKFEIEKFNG NFSLWKLK++A LRKDNCL AIDG P +IT
Sbjct: 1  MAAKFEIEKFNGRNFSLWKLKIRAILRKDNCLDAIDGRPADIT 43

[Close]
BLAST of CaUC06G118860 vs. NCBI nr
Match: KAA0067282.1 (hypothetical protein E6C27_scaffold418G001030 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-11
Identity = 37/43 (86.05%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 1  MAAKFEIEKFNGTNFSLWKLKMKAFLRKDNCLAAIDGSPVEIT 44
          MAAKFEIEKFN TNFSLWKLKMKA LRKDNCL AID  P EIT
Sbjct: 1  MAAKFEIEKFNETNFSLWKLKMKAVLRKDNCLEAIDKRPAEIT 43

[Close]
BLAST of CaUC06G118860 vs. NCBI nr
Match: ACL97387.1 (Gag-Pol polyprotein [Lotus japonicus])

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-11
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 1  MAAKFEIEKFNGTNFSLWKLKMKAFLRKDNCLAAIDGSPVEIT 44
          MAAKFEI KFNG+NFSLWKLK+KA LRKDNCL AIDG P +IT
Sbjct: 1  MAAKFEIPKFNGSNFSLWKLKIKAILRKDNCLPAIDGRPADIT 43

[Close]
BLAST of CaUC06G118860 vs. ExPASy TrEMBL
Match: A0A5D3CH81 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00690 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 37/43 (86.05%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 1  MAAKFEIEKFNGTNFSLWKLKMKAFLRKDNCLAAIDGSPVEIT 44
          MAAKFEIEKFN TNFSLWKLKMKA LRKDNCL AID  P EIT
Sbjct: 1  MAAKFEIEKFNETNFSLWKLKMKAVLRKDNCLEAIDKRPAEIT 43

[Close]
BLAST of CaUC06G118860 vs. ExPASy TrEMBL
Match: A0A5A7VFY3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001030 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 37/43 (86.05%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 1  MAAKFEIEKFNGTNFSLWKLKMKAFLRKDNCLAAIDGSPVEIT 44
          MAAKFEIEKFN TNFSLWKLKMKA LRKDNCL AID  P EIT
Sbjct: 1  MAAKFEIEKFNETNFSLWKLKMKAVLRKDNCLEAIDKRPAEIT 43

[Close]
BLAST of CaUC06G118860 vs. ExPASy TrEMBL
Match: B8YLY4 (Gag-Pol polyprotein OS=Medicago truncatula OX=3880 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 1  MAAKFEIEKFNGTNFSLWKLKMKAFLRKDNCLAAIDGSPVEIT 44
          MAAKFEIEKFNG NFSLWKLK++A LRKDNCL AIDG P +IT
Sbjct: 1  MAAKFEIEKFNGRNFSLWKLKIRAILRKDNCLDAIDGRPADIT 43

[Close]
BLAST of CaUC06G118860 vs. ExPASy TrEMBL
Match: B8YLY3 (Gag-Pol polyprotein OS=Medicago truncatula OX=3880 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 1  MAAKFEIEKFNGTNFSLWKLKMKAFLRKDNCLAAIDGSPVEIT 44
          MAAKFEIEKFNG NFSLWKLK++A LRKDNCL AIDG P +IT
Sbjct: 1  MAAKFEIEKFNGRNFSLWKLKIRAILRKDNCLDAIDGRPADIT 43

[Close]
BLAST of CaUC06G118860 vs. ExPASy TrEMBL
Match: B8YLY7 (Gag-Pol polyprotein OS=Lotus japonicus OX=34305 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 1  MAAKFEIEKFNGTNFSLWKLKMKAFLRKDNCLAAIDGSPVEIT 44
          MAAKFEI KFNG+NFSLWKLK+KA LRKDNCL AIDG P +IT
Sbjct: 1  MAAKFEIPKFNGSNFSLWKLKIKAILRKDNCLPAIDGRPADIT 43

The following BLAST results are available for this feature:
BLAST of CaUC06G118860 vs. NCBI nr
Match NameE-valueIdentityDescription
ACL97383.12.7e-1181.40Gag-Pol polyprotein [Medicago truncatula][more]
TYK10895.12.7e-1186.05hypothetical protein E5676_scaffold231G00690 [Cucumis melo var. makuwa][more]
ACL97384.12.7e-1181.40Gag-Pol polyprotein [Medicago truncatula][more]
KAA0067282.12.7e-1186.05hypothetical protein E6C27_scaffold418G001030 [Cucumis melo var. makuwa][more]
ACL97387.12.7e-1181.40Gag-Pol polyprotein [Lotus japonicus][more]
BLAST of CaUC06G118860 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G118860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CH811.3e-1186.05Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VFY31.3e-1186.05Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
B8YLY41.3e-1181.40Gag-Pol polyprotein OS=Medicago truncatula OX=3880 PE=4 SV=1[more]
B8YLY31.3e-1181.40Gag-Pol polyprotein OS=Medicago truncatula OX=3880 PE=4 SV=1[more]
B8YLY71.3e-1181.40Gag-Pol polyprotein OS=Lotus japonicus OX=34305 PE=4 SV=1[more]
BLAST of CaUC06G118860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G118860.1CaUC06G118860.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding