CaUC06G118270 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G118270
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDUF4283 domain-containing protein
LocationCiama_Chr06: 23137572 .. 23137838 (-)
RNA-Seq ExpressionCaUC06G118270
SyntenyCaUC06G118270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACATCGCTGAAATACAAACCATTTCATGCTGAGAAGGCTATAGCCTTCTCAAAGGACAAGGAGCATATCAAAGTGCTATGCAAGAACAAAGGCTGGGTGACAGTTGAACACTTTTATGTTAAATTCAAACAACGGATGACATCCATACATGCAACACCAAAACTGATCCCAATCTATGGAGATTGGACAAAATTTCAAGGAATCCCTTTACACACTTGGAATATGAACACATTCAAGCAAATCGAAAACGCATGCGAATGA

mRNA sequence

ATGGCAACATCGCTGAAATACAAACCATTTCATGCTGAGAAGGCTATAGCCTTCTCAAAGGACAAGGAGCATATCAAAGTGCTATGCAAGAACAAAGGCTGGGTGACAGTTGAACACTTTTATGTTAAATTCAAACAACGGATGACATCCATACATGCAACACCAAAACTGATCCCAATCTATGGAGATTGGACAAAATTTCAAGGAATCCCTTTACACACTTGGAATATGAACACATTCAAGCAAATCGAAAACGCATGCGAATGA

Coding sequence (CDS)

ATGGCAACATCGCTGAAATACAAACCATTTCATGCTGAGAAGGCTATAGCCTTCTCAAAGGACAAGGAGCATATCAAAGTGCTATGCAAGAACAAAGGCTGGGTGACAGTTGAACACTTTTATGTTAAATTCAAACAACGGATGACATCCATACATGCAACACCAAAACTGATCCCAATCTATGGAGATTGGACAAAATTTCAAGGAATCCCTTTACACACTTGGAATATGAACACATTCAAGCAAATCGAAAACGCATGCGAATGA

Protein sequence

MATSLKYKPFHAEKAIAFSKDKEHIKVLCKNKGWVTVEHFYVKFKQRMTSIHATPKLIPIYGDWTKFQGIPLHTWNMNTFKQIENACE
Homology
[Close]
BLAST of CaUC06G118270 vs. NCBI nr
Match: KAA0047273.1 (mitotic spindle checkpoint protein mad1 [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.2e-23
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 0 

Query: 3   TSLKYKPFHAEKAIAFSKDKEHIKVLCKNKGWVTVEHFYVKFKQRMTSIHATPKLIPIYG 62
           T+L Y+PFHA+KA+ F KDK  +++LCKN+GW TV +  VKF++   +IHA P+L+  YG
Sbjct: 192 TNLSYQPFHADKALIFIKDKSLVRLLCKNRGWSTVGNVDVKFEEWNHAIHAMPRLMSSYG 251

Query: 63  DWTKFQGIPLHTWNMNTFKQIENAC 88
            WTKF+GIPLH WN+NTF QI NAC
Sbjct: 252 GWTKFRGIPLHAWNLNTFTQIRNAC 276

[Close]
BLAST of CaUC06G118270 vs. NCBI nr
Match: KAA0040039.1 (hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 4.5e-23
Identity = 47/85 (55.29%), Postives = 65/85 (76.47%), Query Frame = 0 

Query: 3   TSLKYKPFHAEKAIAFSKDKEHIKVLCKNKGWVTVEHFYVKFKQRMTSIHATPKLIPIYG 62
           T+++YKPFHA+KA+ + K++E  K+LCKNKGW TV  FYVKF++     HA+PK+IP YG
Sbjct: 227 TTVRYKPFHADKALIYFKNEEQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYG 286

Query: 63  DWTKFQGIPLHTWNMNTFKQIENAC 88
            W K +G+PLH WN+ +F QI +AC
Sbjct: 287 GWIKVRGVPLHAWNLESFIQIGDAC 311

[Close]
BLAST of CaUC06G118270 vs. NCBI nr
Match: TYK24535.1 (hypothetical protein E5676_scaffold266G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 4.5e-23
Identity = 47/85 (55.29%), Postives = 65/85 (76.47%), Query Frame = 0 

Query: 3   TSLKYKPFHAEKAIAFSKDKEHIKVLCKNKGWVTVEHFYVKFKQRMTSIHATPKLIPIYG 62
           T+++YKPFHA+KA+ + K++E  K+LCKNKGW TV  FYVKF++     HA+PK+IP YG
Sbjct: 211 TTVRYKPFHADKALIYFKNEEQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYG 270

Query: 63  DWTKFQGIPLHTWNMNTFKQIENAC 88
            W K +G+PLH WN+ +F QI +AC
Sbjct: 271 GWIKVRGVPLHAWNLESFIQIGDAC 295

[Close]
BLAST of CaUC06G118270 vs. NCBI nr
Match: KAA0057199.1 (hypothetical protein E6C27_scaffold280G00320 [Cucumis melo var. makuwa] >TYK18763.1 hypothetical protein E5676_scaffold257G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 7.8e-23
Identity = 47/85 (55.29%), Postives = 63/85 (74.12%), Query Frame = 0 

Query: 3   TSLKYKPFHAEKAIAFSKDKEHIKVLCKNKGWVTVEHFYVKFKQRMTSIHATPKLIPIYG 62
           + + YKPFHA+KA+   KD E + +LC+NKGW T++ FYVKF++   ++HAT KLIP YG
Sbjct: 94  SDITYKPFHADKALLILKDVEQVNLLCRNKGWSTMDRFYVKFEKWDQALHATTKLIPSYG 153

Query: 63  DWTKFQGIPLHTWNMNTFKQIENAC 88
            W +F+GIPLH W  +TFKQI  AC
Sbjct: 154 GWKRFRGIPLHAWKQSTFKQIREAC 178

[Close]
BLAST of CaUC06G118270 vs. NCBI nr
Match: KAA0044557.1 (hypothetical protein E6C27_scaffold46G003060 [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.3e-22
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 0 

Query: 6   KYKPFHAEKAIAFSKDKEHIKVLCKNKGWVTVEHFYVKFKQRMTSIHATPKLIPIYGDWT 65
           +Y PFHA+KA+ F KDK+  K+LCKN GW TV  FYVKF++   S HA  K+IP YG WT
Sbjct: 225 RYVPFHADKALLFIKDKDLAKLLCKNNGWTTVGPFYVKFEKWSKSAHADTKVIPSYGGWT 284

Query: 66  KFQGIPLHTWNMNTFKQIENAC 88
           +F+GIPLH WN+NTF QI  AC
Sbjct: 285 RFRGIPLHIWNLNTFIQIGEAC 306

[Close]
BLAST of CaUC06G118270 vs. ExPASy TrEMBL
Match: A0A5A7TUN4 (Mitotic spindle checkpoint protein mad1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00660 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.8e-24
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 0 

Query: 3   TSLKYKPFHAEKAIAFSKDKEHIKVLCKNKGWVTVEHFYVKFKQRMTSIHATPKLIPIYG 62
           T+L Y+PFHA+KA+ F KDK  +++LCKN+GW TV +  VKF++   +IHA P+L+  YG
Sbjct: 192 TNLSYQPFHADKALIFIKDKSLVRLLCKNRGWSTVGNVDVKFEEWNHAIHAMPRLMSSYG 251

Query: 63  DWTKFQGIPLHTWNMNTFKQIENAC 88
            WTKF+GIPLH WN+NTF QI NAC
Sbjct: 252 GWTKFRGIPLHAWNLNTFTQIRNAC 276

[Close]
BLAST of CaUC06G118270 vs. ExPASy TrEMBL
Match: A0A5A7TFK7 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00060 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.2e-23
Identity = 47/85 (55.29%), Postives = 65/85 (76.47%), Query Frame = 0 

Query: 3   TSLKYKPFHAEKAIAFSKDKEHIKVLCKNKGWVTVEHFYVKFKQRMTSIHATPKLIPIYG 62
           T+++YKPFHA+KA+ + K++E  K+LCKNKGW TV  FYVKF++     HA+PK+IP YG
Sbjct: 227 TTVRYKPFHADKALIYFKNEEQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYG 286

Query: 63  DWTKFQGIPLHTWNMNTFKQIENAC 88
            W K +G+PLH WN+ +F QI +AC
Sbjct: 287 GWIKVRGVPLHAWNLESFIQIGDAC 311

[Close]
BLAST of CaUC06G118270 vs. ExPASy TrEMBL
Match: A0A5D3DLP0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00770 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.2e-23
Identity = 47/85 (55.29%), Postives = 65/85 (76.47%), Query Frame = 0 

Query: 3   TSLKYKPFHAEKAIAFSKDKEHIKVLCKNKGWVTVEHFYVKFKQRMTSIHATPKLIPIYG 62
           T+++YKPFHA+KA+ + K++E  K+LCKNKGW TV  FYVKF++     HA+PK+IP YG
Sbjct: 211 TTVRYKPFHADKALIYFKNEEQAKLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYG 270

Query: 63  DWTKFQGIPLHTWNMNTFKQIENAC 88
            W K +G+PLH WN+ +F QI +AC
Sbjct: 271 GWIKVRGVPLHAWNLESFIQIGDAC 295

[Close]
BLAST of CaUC06G118270 vs. ExPASy TrEMBL
Match: A0A5D3D5E9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00670 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.8e-23
Identity = 47/85 (55.29%), Postives = 63/85 (74.12%), Query Frame = 0 

Query: 3   TSLKYKPFHAEKAIAFSKDKEHIKVLCKNKGWVTVEHFYVKFKQRMTSIHATPKLIPIYG 62
           + + YKPFHA+KA+   KD E + +LC+NKGW T++ FYVKF++   ++HAT KLIP YG
Sbjct: 94  SDITYKPFHADKALLILKDVEQVNLLCRNKGWSTMDRFYVKFEKWDQALHATTKLIPSYG 153

Query: 63  DWTKFQGIPLHTWNMNTFKQIENAC 88
            W +F+GIPLH W  +TFKQI  AC
Sbjct: 154 GWKRFRGIPLHAWKQSTFKQIREAC 178

[Close]
BLAST of CaUC06G118270 vs. ExPASy TrEMBL
Match: A0A5A7TRS9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003060 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.4e-23
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 0 

Query: 6   KYKPFHAEKAIAFSKDKEHIKVLCKNKGWVTVEHFYVKFKQRMTSIHATPKLIPIYGDWT 65
           +Y PFHA+KA+ F KDK+  K+LCKN GW TV  FYVKF++   S HA  K+IP YG WT
Sbjct: 225 RYVPFHADKALLFIKDKDLAKLLCKNNGWTTVGPFYVKFEKWSKSAHADTKVIPSYGGWT 284

Query: 66  KFQGIPLHTWNMNTFKQIENAC 88
           +F+GIPLH WN+NTF QI  AC
Sbjct: 285 RFRGIPLHIWNLNTFIQIGEAC 306

The following BLAST results are available for this feature:
BLAST of CaUC06G118270 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047273.11.2e-2358.82mitotic spindle checkpoint protein mad1 [Cucumis melo var. makuwa][more]
KAA0040039.14.5e-2355.29hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa][more]
TYK24535.14.5e-2355.29hypothetical protein E5676_scaffold266G00770 [Cucumis melo var. makuwa][more]
KAA0057199.17.8e-2355.29hypothetical protein E6C27_scaffold280G00320 [Cucumis melo var. makuwa] >TYK1876... [more]
KAA0044557.11.3e-2260.98hypothetical protein E6C27_scaffold46G003060 [Cucumis melo var. makuwa][more]
BLAST of CaUC06G118270 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G118270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TUN45.8e-2458.82Mitotic spindle checkpoint protein mad1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7TFK72.2e-2355.29DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3DLP02.2e-2355.29DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3D5E93.8e-2355.29DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TRS96.4e-2360.98DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of CaUC06G118270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G118270.1CaUC06G118270.1mRNA