CaUC06G118210 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G118210
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCiama_Chr06: 23021366 .. 23025655 (-)
RNA-Seq ExpressionCaUC06G118210
SyntenyCaUC06G118210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATGGTCTCGCAACGGACTGGTCACGAATAGGCTATCAATGAGGCCATACCGAGCATCCTGCGATGGAGTTCCACATACTCACCTGGAGCTAGGGTGATTCAGAACCAAGTGTTTGGATCTTAAGCGGTAAGTCGTTTTGCTTTACAATCTATAATTTACATTGTAGGGTTTAAGGTTTATTTTTTAATTTTAATATATTTTCATAATGGTTACATGCAGGTTTGTATGAATGACTCGTTCCGACAGAAGAGGGGCAGGCTTACTTAAGTCAGTTTCTTGACCTGCCATGTGCAGATGGATACTAGGAACTTCCTCCTATAGAGGAGGTGATTGGTTCTCCATTGAAGGGTAAGGGTGACGAATGGGTGGATGCACTCGAGAGGGTTGAGGATCCATCGATGGGTGGCTCAGGAGGTGTGGATCCAATAGTTAGGGTGTACCATATATGATGGGTCCAACAATTAGGGGTCCACTTTTGAGGACTCCATGCAGTCCACTTGTGAGTGTAGCACCTCAAGAATCAATGGGATTGCATAGAGTTCTCATTCATGGCTAAGCTGAAGTCAATCAAGGAGATGTTAATGATTCTTTTAAAGGTGAGTTACGATCTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTTTTTTTTTTTTTTTTTTTTTGTGCTAGTTTATATTTTTATGGTTTACGTTCTATATTTTTTGTTATCTTATAGGTTAAGTCAATTGATCCTCAACAGTATTCTGGGAATGGGGAAGGTCCTTCATACTGGGAAGGTTTATTCCAGCAGCCCAGTAGCTGAGGATCCACTTATTATGAAGGATCTATTTGCCGAGGGTCCACATATTGCTGCAGATCTATCAGTTGTGGATCCACTTGAAGGAATCATTCCCAGCGAAAGCATTTGTTCGTCCTTTTTCTTTGAGTTTTGTTTAGAAATAAAATTAAAAAAAAAAGCATAAAATAGTAAATTACAGAATCATAAACATATTGTAATTTCGATGGTTAAGCATGAAAAGGGAAAGGAGAAGAGATTACCTTTGTAGAAACTCTTTTCTCCAGCAAATTGAACTCCTCTTTTCTGGGAATGCCTCAAAGAGGGCTTCCTCGCTATGATTTTGGAAAGTACAGACTTGTGAGAGTCTATTTTGAAAGGGTAAGGGAAATGAGAGGGAGATCCATCTTTTTTTAGAGAGAGAATAATGGAGAGAGAAAATTTTCAGCAATCATGCAACCACTCCAAAATGCCAGAGATCGTATTTAAAGAGAGAAAGGGAGTGTATCTCCCCACTCCCATTCACTAACGGGAGTGATATTTATTTAATTAATATAAATAAATCATACTTAAATAAATAAAATAATTTAATTAAATATTCTATATTTAATTAAATGAATATTTGAATCATATTCAAATGTATAATTCTTTCAAAACCTGTAGTTTTATTATTTGGATCATATTCACATTAAATCTCCCATTTTATATAGTTTAATTTTGAACTTATTCAAAATAAACTATATATTATAATGTATCTATATATATTATATCAATTGTATCATACACAATTAACATAGATTTCCCTAAATTAATTTCTACATTCCAAATTATTCTTTCAAAACTTTTAGTCGTTGTTAATCCATTGCGAGCTAGCAAGAAGACTTAATATACCTACATATTTTAAGCTCCAATGACTCAAGATTAATTATTTAAACTCTTTAATTAATTAATCAACATTCATAAACTGAGACAAACAACTATAGACCCGTAGTTTCACTCATATGCACTAGAGAACATATTGCATTCATGGATATAATCATTACATGTAAGTCGATATTTTACGAGTTGTTCGTAATTATAGTTGGGTCAAATATTTGTTTTATTGTTGTAATTACCTCTATACTAATTTTGGTAAATCGAAATTACTGTTTTCGCTTAATGTGTTGATCATCTATGGAGACTATCTGATTAGTATTGTTTAGGTTCAAGCTGTTTTGTCCTTGGGAAACGATTTAGGTATGCTCTCATCTTTCTCTCGTTGTAAAGTTTTGGATTTTTGAACGATTAAGTCTAAAATCTCGAAAATGCTCCAAGAGTGGTAGTGTAGGTTGTTCTCGGTGGGTGGGAAAAAAGTTCTCCTCAAAAGCGTCATCCAAGCCACTCCAAATTATACTATGGGATGCTTTCGAATTTTGAAAGCAATTTACTACGATATTATGTGAATGATGGCTCGATTTTGGTGGGGTTCTTCCTCAAATAATAGAAGGATACATTGGGTGCCTTGGGGGAACTTACGCGAACCTAAGAAGTTGGGAGGTTTCAATTGTTAACGTAATTTAAGGGATATTCTAGGTTAAATAGAATCCAAATTGATTAGAGTATAATTCTAAATTAATTTGGGAATACTTGCTTCTAACTTCCTTATTTTGTATTACCTTTGTATATTTATCCCTTGTATTATCTTTGTAATGTATTACATACAAATATACAATAAAATACAATATACTTTCACATGGTATCAAAGCCCTCATTTTAGGGTTAACAATCTGCCGCCACCTACCACATCCGCCGTCGTCTACCATATCCAACGCCGTCGACCATCTATGCTACCAAATCCGAAGAAAGCCATCTCTGCTACCAGATCCACTGCCGTCGACCAGATCCTACGTCGATTCCGTTTGTTCGTAGATCTGATATTGCAGATCCGTCACGTTCTCAATCGCGTTTTCCATCGTTGGCAACCTGATTTTCTGTCGCATTTCCGTCGACAATCTCTCAGATCCGTCATCGGCAACTCAGGTACAGACTTACCCATTTTCAAATCGACCATCGTTCTTTGTCCCGTGCGTGATACCAATCTCTCAGATCCGTCACGGCAACCCAGGTACAGACTCACCCGTTCTCAGATCGACCATCGTTTTTCGTCTCGTGCGTAGAACCGAGGACCCAGAACCGACCCGTCGTGCGCATCAATCAGTGCACAAATCTGATCCGTGGACTCACTAGATCAACCCGTATGCAGATCAGACTCGTCGTGCACAGTTCTGACCCGTGGACTCACCAAGATCCAACCTCTCAGATCTCAACCTGATCCATCTGTTCGACTCACCAGATCCAACTAGATTCGCAAATCCATCTGAACATAGATCTGTCCAGCTACAGTTCCATTGGCAACCCAGATTTCCACTTGTATTACTAATAATGGAGAAAAATGACGTTTTGCGCCCCATTACCACTATACTTGATGGTATAAATTATATCACGTGGGTTCATCAAAGAAGGAGTTTTTTGATTGGTCGAAAAGTATGGCGAATTGTCACGGGAGATATCACCAAACCCATCAAGAACACACCTAAAAAGGATGCCACCAATAGTGATACCTCCAAACTAGTAGAAAATGATGCTGGTCAAGACCTTGTGGAGGACGATGCTAAGTTTATTGAACGACTAGAGGATTACGATAGCAAAAATCATCAAATAATAACTTGGTTGGGTAACACCTTTATCCCTACCATACATACTCAATTTGATGCATTTGATACTACTAAAGAACTGTGGAATTTTTTAGCTACACGATTTCAGTCTATTGGTTTTGCTCATTACTATCAGTTACATGCCACCCTTGTTAGTTTTTGCAGGAAGTTGGACAGTATGTGAATGAATTTCTTGTTACGCTTCAACCTATCTGGACAAAGTTAGACCAAACTAAGATCAGTATTGACCATTTGCGCCTCATCAAAGTTCTCATGGGACTCCGCCTAGAATATGAATCAGTTCGGGCTACCTTATTACATCGCAGTCCTATACCATCCCTTGATGCAACAATCTAG

mRNA sequence

ATGAGATGGTCTCGCAACGGACTGGTCACGAATAGGCTATCAATGAGGCCATACCGAGCATCCTGCGATGGAGTTCCACATACTCACCTGGAGCTAGGATGGATACTAGGAACTTCCTCCTATAGAGGAGGTGATTGGTTCTCCATTGAAGGGTTAAGTCAATTGATCCTCAACAGTATTCTGGGAATGGGGAAGGTCCTTCATACTGGGAAGGTTTATTCCAGCAGCCCAGTAGCTGAGGATCCACTTATTATGAAGGATCTATTTGCCGAGGGTCCACATATTGCTGCAGATCTATCAGTTGTGGATCCACTTGAAGGAATCATTCCCAGCGAAAGCATTTGTTCGGTTAACAATCTGCCGCCACCTACCACATCCGCCGTCGTCTACCATATCCAACGCCGTCGACCATCTATGCTACCAAATCCGAAGAAAGCCATCTCTGCTACCAGATCCACTGCCGTCGACCAGATCCTACGTCGATTCCGTTTGTTCGTAGATCTGATATTGCAGATCCGTCACGTTCTCAATCGCGTTTTCCATCGTTGGCAACCTGATTTTCTGTCGCATTTCCGTCGACAATCTCTCAGATCCGTCATCGGCAACTCAGAACCGAGGACCCAGAACCGACCCGTCGTGCGCATCAATCAGTGCACAAATCTGATCCGTGGACTCACTAGATCAACCCATCCAACTAGATTCGCAAATCCATCTGAACATAGATCTGTCCAGCTACAGTTCCATTGGCAACCCAGATTTCCACTTGTATTACTAATAATGGAGAAAAATGACGTTTTGCGCCCCATTACCACTATACTTGATGGTATAAATTATATCACGTGGGTTCATCAAAGAAGGAGTTTTTTGATTGGTCGAAAAGTATGGCGAATTGTCACGGGAGATATCACCAAACCCATCAAGAACACACCTAAAAAGGATGCCACCAATAGTGATACCTCCAAACTAGTAGAAAATGATGCTGGTCAAGACCTTGTGGAGGACGATGCTAAGTTTATTGAACGACTAGAGGATTACGATAGCAAAAATCATCAAATAATAACTTGGTTGGGTAACACCTTTATCCCTACCATACATACTCAATTTGATGCATTTGATACTACTAAAGAACTGTGGAATTTTTTAGCTACACGATTTCAGTCTATTGGTTTTGCTCATTACTATCAGTTACATGCCACCCTTGTTAGTTTTTGCAGGAAGTTGGACATTCTCATGGGACTCCGCCTAGAATATGAATCAGTTCGGGCTACCTTATTACATCGCAGTCCTATACCATCCCTTGATGCAACAATCTAG

Coding sequence (CDS)

ATGAGATGGTCTCGCAACGGACTGGTCACGAATAGGCTATCAATGAGGCCATACCGAGCATCCTGCGATGGAGTTCCACATACTCACCTGGAGCTAGGATGGATACTAGGAACTTCCTCCTATAGAGGAGGTGATTGGTTCTCCATTGAAGGGTTAAGTCAATTGATCCTCAACAGTATTCTGGGAATGGGGAAGGTCCTTCATACTGGGAAGGTTTATTCCAGCAGCCCAGTAGCTGAGGATCCACTTATTATGAAGGATCTATTTGCCGAGGGTCCACATATTGCTGCAGATCTATCAGTTGTGGATCCACTTGAAGGAATCATTCCCAGCGAAAGCATTTGTTCGGTTAACAATCTGCCGCCACCTACCACATCCGCCGTCGTCTACCATATCCAACGCCGTCGACCATCTATGCTACCAAATCCGAAGAAAGCCATCTCTGCTACCAGATCCACTGCCGTCGACCAGATCCTACGTCGATTCCGTTTGTTCGTAGATCTGATATTGCAGATCCGTCACGTTCTCAATCGCGTTTTCCATCGTTGGCAACCTGATTTTCTGTCGCATTTCCGTCGACAATCTCTCAGATCCGTCATCGGCAACTCAGAACCGAGGACCCAGAACCGACCCGTCGTGCGCATCAATCAGTGCACAAATCTGATCCGTGGACTCACTAGATCAACCCATCCAACTAGATTCGCAAATCCATCTGAACATAGATCTGTCCAGCTACAGTTCCATTGGCAACCCAGATTTCCACTTGTATTACTAATAATGGAGAAAAATGACGTTTTGCGCCCCATTACCACTATACTTGATGGTATAAATTATATCACGTGGGTTCATCAAAGAAGGAGTTTTTTGATTGGTCGAAAAGTATGGCGAATTGTCACGGGAGATATCACCAAACCCATCAAGAACACACCTAAAAAGGATGCCACCAATAGTGATACCTCCAAACTAGTAGAAAATGATGCTGGTCAAGACCTTGTGGAGGACGATGCTAAGTTTATTGAACGACTAGAGGATTACGATAGCAAAAATCATCAAATAATAACTTGGTTGGGTAACACCTTTATCCCTACCATACATACTCAATTTGATGCATTTGATACTACTAAAGAACTGTGGAATTTTTTAGCTACACGATTTCAGTCTATTGGTTTTGCTCATTACTATCAGTTACATGCCACCCTTGTTAGTTTTTGCAGGAAGTTGGACATTCTCATGGGACTCCGCCTAGAATATGAATCAGTTCGGGCTACCTTATTACATCGCAGTCCTATACCATCCCTTGATGCAACAATCTAG

Protein sequence

MRWSRNGLVTNRLSMRPYRASCDGVPHTHLELGWILGTSSYRGGDWFSIEGLSQLILNSILGMGKVLHTGKVYSSSPVAEDPLIMKDLFAEGPHIAADLSVVDPLEGIIPSESICSVNNLPPPTTSAVVYHIQRRRPSMLPNPKKAISATRSTAVDQILRRFRLFVDLILQIRHVLNRVFHRWQPDFLSHFRRQSLRSVIGNSEPRTQNRPVVRINQCTNLIRGLTRSTHPTRFANPSEHRSVQLQFHWQPRFPLVLLIMEKNDVLRPITTILDGINYITWVHQRRSFLIGRKVWRIVTGDITKPIKNTPKKDATNSDTSKLVENDAGQDLVEDDAKFIERLEDYDSKNHQIITWLGNTFIPTIHTQFDAFDTTKELWNFLATRFQSIGFAHYYQLHATLVSFCRKLDILMGLRLEYESVRATLLHRSPIPSLDATI
Homology
[Close]
BLAST of CaUC06G118210 vs. NCBI nr
Match: XP_031739694.1 (uncharacterized protein LOC105434738 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 1.5e-58
Identity = 127/210 (60.48%), Postives = 144/210 (68.57%), Query Frame = 0 

Query: 260 MEKNDVLRPITTILDGINYITWVHQRRSFLIGRKVWRIVTGDITKPIKNTPKKDAT-NSD 319
           MEK++V RPI+TILDG NYITW HQ RSFLIGRK+WRIVTGDITKP+K TP  D T N D
Sbjct: 1   MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPLMDTTENID 60

Query: 320 TSKLVENDAGQDLVEDDAKFIERLEDYDSKNHQIITWLGNTFIPTIHTQFDAFDTTKELW 379
           T     +   Q+   +  K+IERLED+DSKNHQIITWLGNT IP IHTQFDAFDT KELW
Sbjct: 61  TDP--SDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELW 120

Query: 380 NFLATRFQSIGFAHYYQLHATLVSF-------------------------------CRKL 438
           +FL+TRFQSIG AHYYQLH+ LVS                                 R +
Sbjct: 121 DFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLI 180

[Close]
BLAST of CaUC06G118210 vs. NCBI nr
Match: KAA0047794.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 233.8 bits (595), Expect = 2.8e-57
Identity = 126/216 (58.33%), Postives = 147/216 (68.06%), Query Frame = 0 

Query: 260 MEKNDVLRPITTILDGINYITWVHQRRSFLIGRKVWRIVTGDITKPIKNT-PKKDATNSD 319
           MEKN V RPI+TILDG NYITW HQ RSFLIGRK+WRIVTGDITKP+K T P K+ + ++
Sbjct: 1   MEKNYVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTFPMKNTSKNN 60

Query: 320 TSKLVENDAG-QDLV-----EDDAKFIERLEDYDSKNHQIITWLGNTFIPTIHTQFDAFD 379
           T     NDA   D++      +D ++IERLED+DSKNHQIITWLGNT IP IHTQFD FD
Sbjct: 61  TE---HNDANTSDIIVHEPTVEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDTFD 120

Query: 380 TTKELWNFLATRFQSIGFAHYYQLHATLVSF----------------------------- 438
           + KELWNFL TRFQSIG AHYYQLH+TLV+                              
Sbjct: 121 SAKELWNFLYTRFQSIGLAHYYQLHSTLVNLNQEVGQSVNEYLVTFQPIWTQLDQAKISP 180

[Close]
BLAST of CaUC06G118210 vs. NCBI nr
Match: KAA0043149.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 5.3e-56
Identity = 121/209 (57.89%), Postives = 139/209 (66.51%), Query Frame = 0 

Query: 260 MEKNDVLRPITTILDGINYITWVHQRRSFLIGRKVWRIVTGDITKPIKNTPKKDATNSDT 319
           MEKNDV RPI+TILDG NYITW HQ RSFLIGRK+WRIVTGDITKP+K            
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVK------------ 60

Query: 320 SKLVENDAGQDLVEDDAKFIERLEDYDSKNHQIITWLGNTFIPTIHTQFDAFDTTKELWN 379
             +V   + +D+     ++IERLED+DSKNHQIITWLGNT IP IHTQFDAFD+ KELW+
Sbjct: 61  -PIVHETSAEDI-----QYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWD 120

Query: 380 FLATRFQSIGFAHYYQLHATLVSF-------------------------------CRKLD 438
           FL TRFQSIG AHYYQLH+TLVS                                 R + 
Sbjct: 121 FLYTRFQSIGLAHYYQLHSTLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIK 180

[Close]
BLAST of CaUC06G118210 vs. NCBI nr
Match: XP_008445037.1 (PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo])

HSP 1 Score: 229.6 bits (584), Expect = 5.3e-56
Identity = 121/209 (57.89%), Postives = 139/209 (66.51%), Query Frame = 0 

Query: 260 MEKNDVLRPITTILDGINYITWVHQRRSFLIGRKVWRIVTGDITKPIKNTPKKDATNSDT 319
           MEKNDV RPI+TILDG NYITW HQ RSFLIGRK+WRIVTGDITKP+K            
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVK------------ 60

Query: 320 SKLVENDAGQDLVEDDAKFIERLEDYDSKNHQIITWLGNTFIPTIHTQFDAFDTTKELWN 379
             +V   + +D+     ++IERLED+DSKNHQIITWLGNT IP IHTQFDAFD+ KELW+
Sbjct: 61  -PIVHETSAEDI-----QYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWD 120

Query: 380 FLATRFQSIGFAHYYQLHATLVSF-------------------------------CRKLD 438
           FL TRFQSIG AHYYQLH+TLVS                                 R + 
Sbjct: 121 FLYTRFQSIGLAHYYQLHSTLVSLNQEVGQSVNEYLATLQPIWTQLEQAKISPDHIRLIK 180

[Close]
BLAST of CaUC06G118210 vs. NCBI nr
Match: KAA0036574.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 227.6 bits (579), Expect = 2.0e-55
Identity = 120/209 (57.42%), Postives = 138/209 (66.03%), Query Frame = 0 

Query: 260 MEKNDVLRPITTILDGINYITWVHQRRSFLIGRKVWRIVTGDITKPIKNTPKKDATNSDT 319
           MEKNDV RPI+TILDG NYITW HQ RSFLIGRK+WRIVTGDITKP+K            
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVK------------ 60

Query: 320 SKLVENDAGQDLVEDDAKFIERLEDYDSKNHQIITWLGNTFIPTIHTQFDAFDTTKELWN 379
             +V   + +D+     ++IERLED+DSKNHQIITWLGNT IP IHTQFDAFD+ KELW+
Sbjct: 61  -PIVHETSAEDI-----QYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWD 120

Query: 380 FLATRFQSIGFAHYYQLHATLVSF-------------------------------CRKLD 438
           FL TRFQSIG AHYYQLH+TLVS                                 R + 
Sbjct: 121 FLYTRFQSIGLAHYYQLHSTLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIK 180

[Close]
BLAST of CaUC06G118210 vs. ExPASy TrEMBL
Match: A0A5A7TXR0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00330 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.4e-57
Identity = 126/216 (58.33%), Postives = 147/216 (68.06%), Query Frame = 0 

Query: 260 MEKNDVLRPITTILDGINYITWVHQRRSFLIGRKVWRIVTGDITKPIKNT-PKKDATNSD 319
           MEKN V RPI+TILDG NYITW HQ RSFLIGRK+WRIVTGDITKP+K T P K+ + ++
Sbjct: 1   MEKNYVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTFPMKNTSKNN 60

Query: 320 TSKLVENDAG-QDLV-----EDDAKFIERLEDYDSKNHQIITWLGNTFIPTIHTQFDAFD 379
           T     NDA   D++      +D ++IERLED+DSKNHQIITWLGNT IP IHTQFD FD
Sbjct: 61  TE---HNDANTSDIIVHEPTVEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDTFD 120

Query: 380 TTKELWNFLATRFQSIGFAHYYQLHATLVSF----------------------------- 438
           + KELWNFL TRFQSIG AHYYQLH+TLV+                              
Sbjct: 121 SAKELWNFLYTRFQSIGLAHYYQLHSTLVNLNQEVGQSVNEYLVTFQPIWTQLDQAKISP 180

[Close]
BLAST of CaUC06G118210 vs. ExPASy TrEMBL
Match: A0A5D3DG18 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00850 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.6e-56
Identity = 121/209 (57.89%), Postives = 139/209 (66.51%), Query Frame = 0 

Query: 260 MEKNDVLRPITTILDGINYITWVHQRRSFLIGRKVWRIVTGDITKPIKNTPKKDATNSDT 319
           MEKNDV RPI+TILDG NYITW HQ RSFLIGRK+WRIVTGDITKP+K            
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVK------------ 60

Query: 320 SKLVENDAGQDLVEDDAKFIERLEDYDSKNHQIITWLGNTFIPTIHTQFDAFDTTKELWN 379
             +V   + +D+     ++IERLED+DSKNHQIITWLGNT IP IHTQFDAFD+ KELW+
Sbjct: 61  -PIVHETSAEDI-----QYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWD 120

Query: 380 FLATRFQSIGFAHYYQLHATLVSF-------------------------------CRKLD 438
           FL TRFQSIG AHYYQLH+TLVS                                 R + 
Sbjct: 121 FLYTRFQSIGLAHYYQLHSTLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIK 180

[Close]
BLAST of CaUC06G118210 vs. ExPASy TrEMBL
Match: A0A1S3BBA1 (uncharacterized protein LOC103488200 OS=Cucumis melo OX=3656 GN=LOC103488200 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.6e-56
Identity = 121/209 (57.89%), Postives = 139/209 (66.51%), Query Frame = 0 

Query: 260 MEKNDVLRPITTILDGINYITWVHQRRSFLIGRKVWRIVTGDITKPIKNTPKKDATNSDT 319
           MEKNDV RPI+TILDG NYITW HQ RSFLIGRK+WRIVTGDITKP+K            
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVK------------ 60

Query: 320 SKLVENDAGQDLVEDDAKFIERLEDYDSKNHQIITWLGNTFIPTIHTQFDAFDTTKELWN 379
             +V   + +D+     ++IERLED+DSKNHQIITWLGNT IP IHTQFDAFD+ KELW+
Sbjct: 61  -PIVHETSAEDI-----QYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWD 120

Query: 380 FLATRFQSIGFAHYYQLHATLVSF-------------------------------CRKLD 438
           FL TRFQSIG AHYYQLH+TLVS                                 R + 
Sbjct: 121 FLYTRFQSIGLAHYYQLHSTLVSLNQEVGQSVNEYLATLQPIWTQLEQAKISPDHIRLIK 180

[Close]
BLAST of CaUC06G118210 vs. ExPASy TrEMBL
Match: A0A5A7SZ66 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00840 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 9.8e-56
Identity = 120/209 (57.42%), Postives = 138/209 (66.03%), Query Frame = 0 

Query: 260 MEKNDVLRPITTILDGINYITWVHQRRSFLIGRKVWRIVTGDITKPIKNTPKKDATNSDT 319
           MEKNDV RPI+TILDG NYITW HQ RSFLIGRK+WRIVTGDITKP+K            
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVK------------ 60

Query: 320 SKLVENDAGQDLVEDDAKFIERLEDYDSKNHQIITWLGNTFIPTIHTQFDAFDTTKELWN 379
             +V   + +D+     ++IERLED+DSKNHQIITWLGNT IP IHTQFDAFD+ KELW+
Sbjct: 61  -PIVHETSAEDI-----QYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWD 120

Query: 380 FLATRFQSIGFAHYYQLHATLVSF-------------------------------CRKLD 438
           FL TRFQSIG AHYYQLH+TLVS                                 R + 
Sbjct: 121 FLYTRFQSIGLAHYYQLHSTLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIK 180

[Close]
BLAST of CaUC06G118210 vs. ExPASy TrEMBL
Match: A0A1S4E0Y9 (uncharacterized protein LOC107991463 OS=Cucumis melo OX=3656 GN=LOC107991463 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.2e-55
Identity = 121/211 (57.35%), Postives = 146/211 (69.19%), Query Frame = 0 

Query: 260 MEKNDVLRPITTILDGINYITWVHQRRSFLIGRKVWRIVTGDITKPIK-NTPKKDATN-S 319
           M+KN+V R I+TILDG NYITW H  RSFLIGRK+WRIVTGDITKPIK  TP K+  N +
Sbjct: 1   MQKNNVARLISTILDGTNYITWAHLMRSFLIGRKLWRIVTGDITKPIKPTTPMKNIDNTA 60

Query: 320 DTSKLVENDAGQDLVEDDAKFIERLEDYDSKNHQIITWLGNTFIPTIHTQFDAFDTTKEL 379
           +TS ++ ++       +D K+IERLED+DSKNHQIITWLGNT IP IHTQ D+FDT KEL
Sbjct: 61  NTSDVLIHET----TAEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQLDSFDTAKEL 120

Query: 380 WNFLATRFQSIGFAHYYQLHATLVSF-------------------------------CRK 438
           W+FLATRFQSIG AHYYQL++TL++                                 R 
Sbjct: 121 WDFLATRFQSIGLAHYYQLYSTLINLNQEVGQSVNEYLATLQPIWTQLDQTKINPDHIRL 180

The following BLAST results are available for this feature:
BLAST of CaUC06G118210 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031739694.11.5e-5860.48uncharacterized protein LOC105434738 [Cucumis sativus][more]
KAA0047794.12.8e-5758.33putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0043149.15.3e-5657.89Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
XP_008445037.15.3e-5657.89PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo][more]
KAA0036574.12.0e-5557.42Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
BLAST of CaUC06G118210 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G118210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TXR01.4e-5758.33Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3DG182.6e-5657.89Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A1S3BBA12.6e-5657.89uncharacterized protein LOC103488200 OS=Cucumis melo OX=3656 GN=LOC103488200 PE=... [more]
A0A5A7SZ669.8e-5657.42Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A1S4E0Y92.2e-5557.35uncharacterized protein LOC107991463 OS=Cucumis melo OX=3656 GN=LOC107991463 PE=... [more]
BLAST of CaUC06G118210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G118210.1CaUC06G118210.1mRNA