CaUC06G117910 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G117910
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDUF4283 domain-containing protein
LocationCiama_Chr06: 22479812 .. 22482068 (-)
RNA-Seq ExpressionCaUC06G117910
SyntenyCaUC06G117910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTTTCAAAAAGAGTACACAACCTTTTCTATGATTTTCTTTTTGCTTCCCTCACACACCCACTCTAAGGCTTGGACTTGAAAAGCATCGAAAGTTTTTGGTACTTAGCTCACTCGAAGGTATGAACTTGGAACCTCCAACTTGGTATCACCAAGAGTGTAGGATTTTTGTGTAGTGCCACATATCGGAATGACTCAAAAATGTAATGGACTCCAAACATTATGAAAGGATCCTCTGACTTTATTTCAAATCATTCTAATTAAAAATACAAGGATATACTAACTCTAGCTATGTGAGTCGCATATAAAGCTACGAAAGAATGTTTTTCTTGTCATCAGAGTTGAGGAGAGAATTTTGTATGATGATAATAATTTTTCATACAAAAAAAATTATTTTGGATAGGTTGTGATTTTTTCTCCAATTTTGAAATTTTCTACTAAATTCTTTTGTTTCCTATTATTATTGCTTTCATATATATATATATATATACACATACCATCATTAACCAAGACAAACAAAATATCTTGTGATGGTTAGTGCCGACAGGTTTTTCCCAATAGAAAGACTCTAACTCTAAGCTCTTGCCAACAAGGCCCTCCCTTGGAGGCCTAACCATTTATATGTTAAGAATAAAGAGATAATCAAAGGATAGAATGTGCAATTACTTTAACCCAAAATTTCTCAACATGAGTTTCATATATATATATACGCATATGTGTGCGCGCGCGCAGCAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAGGAAGAAAGAAAGAAAGAAAAGAAAAGAAATATATGTGTGAAAGTGGGGACCACATTCAAAACTCTGATTGCAACACCCAAAACAAACCACTTTTCCTAGAAAAGAGGTTTATTGGCTTCTGACTTTGGTCAAAAAAACCCACAATTGGAAAGGAAACATTGCATAAATTTTTTGTATTGATGACAGAGGACGAAAATGTTGCATCCTTGTTCTTGAAAACACAGACAAAAGTGGATGGGTTTCGTTCCTATCTATGATCACGTTCAAGACAGAAACAGAAGTAAGGAAAACCTATTACCAAGAATCATCCAGCAAAAGAAGCGACATAGCTTCCTACACATCACACTCAGATGAAGGTAGCCCAAAACGCACGTATGCGAAAGTCCTTTCACCACAGAGCTCCCTTGCCACAAGCCCAAGGAAGAACATCAATGATATCCTCTACAACAGTGATACCTTAAAAATTGAAGATGAGGAGGATCTTGGTTAGGATCACGCATTCATCGTCATCAGACATTGCTTCCACGATGATTGGACTAAAATATTTGCTAAGCTAAGGGCAAACGAAATCGACATTGAAGTACAAACCATTTAATGCAGAAAAAGCTATTGCTTTCACAAAAGATAAGGAGCAGATCAAGATGCTTTGCAGACAGAAACAAGGGTTGGGTTACCGTTGGACACTTCTATGTCAAATTCGAACCTTGGATGGCATCTATACATGCAACCCCGAAACTGATTCCTAG

mRNA sequence

ATGAAAGGACGAAAATGTTGCATCCTTGTTCTTGAAAACACAGACAAAAGTGGATGGGTTTCGTTCCTATCTATGATCACGTTCAAGACAGAAACAGAAGTAAGGAAAACCTATTACCAAGAATCATCCAGCAAAAGAAGCGACATAGCTTCCTACACATCACACTCAGATGAAGGTAGCCCAAAACGCACGTATGCGAAAGTCCTTTCACCACAGAGCTCCCTTGCCACAAGCCCAAGGAAGAACATCAATGATATCCTCTACAACAGTGATACCTTAAAAATTGAAGATGAGGAGGATCTTGGGCAAACGAAATCGACATTGAAGTACAAACCATTTAATGCAGAAAAAGCTATTGCTTTCACAAAAGATAAGGAGCAGATCAAGATGCTTTGCAGACAGAAACAAGGGTTGGGTTACCGTTGGACACTTCTATGTCAAATTCGAACCTTGGATGGCATCTATACATGCAACCCCGAAACTGATTCCTAG

Coding sequence (CDS)

ATGAAAGGACGAAAATGTTGCATCCTTGTTCTTGAAAACACAGACAAAAGTGGATGGGTTTCGTTCCTATCTATGATCACGTTCAAGACAGAAACAGAAGTAAGGAAAACCTATTACCAAGAATCATCCAGCAAAAGAAGCGACATAGCTTCCTACACATCACACTCAGATGAAGGTAGCCCAAAACGCACGTATGCGAAAGTCCTTTCACCACAGAGCTCCCTTGCCACAAGCCCAAGGAAGAACATCAATGATATCCTCTACAACAGTGATACCTTAAAAATTGAAGATGAGGAGGATCTTGGGCAAACGAAATCGACATTGAAGTACAAACCATTTAATGCAGAAAAAGCTATTGCTTTCACAAAAGATAAGGAGCAGATCAAGATGCTTTGCAGACAGAAACAAGGGTTGGGTTACCGTTGGACACTTCTATGTCAAATTCGAACCTTGGATGGCATCTATACATGCAACCCCGAAACTGATTCCTAG

Protein sequence

MKGRKCCILVLENTDKSGWVSFLSMITFKTETEVRKTYYQESSSKRSDIASYTSHSDEGSPKRTYAKVLSPQSSLATSPRKNINDILYNSDTLKIEDEEDLGQTKSTLKYKPFNAEKAIAFTKDKEQIKMLCRQKQGLGYRWTLLCQIRTLDGIYTCNPETDS
Homology
BLAST of CaUC06G117910 vs. NCBI nr
Match: KAA0044449.1 (hypothetical protein E6C27_scaffold46G001820 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-13
Identity = 53/146 (36.30%), Postives = 79/146 (54.11%), Query Frame = 0

Query: 2   KGRKCCILVLENTDKSGWVSFLSMITFKTETEVRKT----YYQESSSKRSDIASYTSHSD 61
           +GRKCCILV E  DK+GW  F  M+T K  ++ ++T    YY +   K     SY S +D
Sbjct: 102 RGRKCCILVPEGLDKTGWALFNDMLTCKKTSDKKETPTRHYYNQDKGKEKIQQSYDSSTD 161

Query: 62  EGSPKRTYAKVLSPQSSLA--------TSPRKNINDILYNSDTLKIED--EEDLGQTKST 121
             SP++TYA+ +S  SS +        T    ++    ++ D  KI D   +   +  S 
Sbjct: 162 SESPRKTYAEAVSSSSSSSSSESDCSKTKSTSSLKRRCFHDDWAKIIDRLRDQTDKKDSC 221

Query: 122 LKYKPFNAEKAIAFTKDKEQIKMLCR 134
            +Y PF+A+KA+ F KDKE  K+LC+
Sbjct: 222 FRYIPFHADKALLFIKDKELAKLLCK 247

BLAST of CaUC06G117910 vs. NCBI nr
Match: TYK29576.1 (hypothetical protein E5676_scaffold655G001820 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-13
Identity = 53/146 (36.30%), Postives = 79/146 (54.11%), Query Frame = 0

Query: 2   KGRKCCILVLENTDKSGWVSFLSMITFKTETEVRKT----YYQESSSKRSDIASYTSHSD 61
           +GRKCCILV E  DK+GW  F  M+T K  ++ ++T    YY +   K     SY S +D
Sbjct: 102 RGRKCCILVPEGLDKTGWALFNDMLTCKKTSDKKETPTRHYYNQDKGKEKIQQSYDSSTD 161

Query: 62  EGSPKRTYAKVLSPQSSLA--------TSPRKNINDILYNSDTLKIED--EEDLGQTKST 121
             SP++TYA+ +S  SS +        T    ++    ++ D  KI D   +   +  S 
Sbjct: 162 SESPRKTYAEAVSSSSSSSSSESDCSKTKSTSSLKRRCFHDDWAKIIDRLRDQTDKKDSC 221

Query: 122 LKYKPFNAEKAIAFTKDKEQIKMLCR 134
            +Y PF+A+KA+ F KDKE  K+LC+
Sbjct: 222 FRYIPFHADKALLFIKDKELAKLLCK 247

BLAST of CaUC06G117910 vs. NCBI nr
Match: KAA0055987.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.7e-10
Identity = 57/147 (38.78%), Postives = 75/147 (51.02%), Query Frame = 0

Query: 2   KGRKCCILVLENTDKSGWVSFLSMITFKTETEVRKTYYQESSSKRSDIASYTSHSDEGSP 61
           +GRKCC+LVLE     GWVSFLSMI    ETE +  +  +   K+ +IA+  S SD  S 
Sbjct: 45  QGRKCCVLVLEGDSTCGWVSFLSMIIPNVETEPKVRHPLDHFFKKRNIATIDSDSD--SS 104

Query: 62  KRTYAKVLS--------------PQSSLATSPRKNINDILYN--SDTLKIEDEEDLGQTK 121
           +++YA+V+S               Q S+   P KN   I      D  K+       QT+
Sbjct: 105 RKSYARVVSEGYSSDSSACSEIKKQRSVKLLPLKNAVVITRRLFYDDWKVIMNSLKRQTE 164

Query: 122 STLKYKPFNAEKAIAFTKDKEQIKMLC 133
           ST  Y PFNAEKA+   KD   +K LC
Sbjct: 165 STFTYHPFNAEKALIIFKDPWNVKSLC 189

BLAST of CaUC06G117910 vs. NCBI nr
Match: TYK18363.1 (hypothetical protein E5676_scaffold456G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-09
Identity = 57/171 (33.33%), Postives = 81/171 (47.37%), Query Frame = 0

Query: 2   KGRKCCILVLENTDKSGWVSFLSMITFKTETEVR----KTYYQESSSKRSDIASYTSHSD 61
           +GRKCCILV E  DK+GW  F  M+T K  ++ +    + +Y +   K      Y S +D
Sbjct: 102 RGRKCCILVPEGLDKTGWALFNDMLTCKKTSDKKEISTRHFYNQDKGKEKIQKPYDSSTD 161

Query: 62  EGSPKRTYAKVLSPQSS--------LATSPRKNI--------------NDI--------- 121
             SPK+TYA+V+S  SS         +TS  K                NDI         
Sbjct: 162 SESPKKTYAEVVSSFSSSESDYSKAKSTSSLKRFLPALKSEIRKEERKNDIDWEKTIILS 221

Query: 122 --LYNSDTLKIED--EEDLGQTKSTLKYKPFNAEKAIAFTKDKEQIKMLCR 134
              ++ D  KI D   E   +  S  +Y PF+A+KA+ F KDK+  K+LC+
Sbjct: 222 RRCFHDDWAKIIDRLREQTDKKDSCFRYVPFHADKALLFIKDKDLAKLLCK 272

BLAST of CaUC06G117910 vs. NCBI nr
Match: KAA0044557.1 (hypothetical protein E6C27_scaffold46G003060 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-09
Identity = 57/171 (33.33%), Postives = 81/171 (47.37%), Query Frame = 0

Query: 2   KGRKCCILVLENTDKSGWVSFLSMITFKTETEVR----KTYYQESSSKRSDIASYTSHSD 61
           +GRKCCILV E  DK+GW  F  M+T K  ++ +    + YY +   K      Y S +D
Sbjct: 79  RGRKCCILVPEGLDKTGWALFSDMLTCKKTSDKKEISTRHYYNQDKGKEKIQKPYDSSTD 138

Query: 62  EGSPKRTYAKVLSPQSSLAT--SPRKNI--------------------NDI--------- 121
             SP++TYA+V+S  SS  +  S  KN                     NDI         
Sbjct: 139 SESPRKTYAEVVSSFSSSESDYSKAKNTSSLKRFLPALKSEIRKEERKNDIDWEKTIILS 198

Query: 122 --LYNSDTLKIED--EEDLGQTKSTLKYKPFNAEKAIAFTKDKEQIKMLCR 134
              ++ D  KI D   E   +  S  +Y PF+A+KA+ F KDK+  K+LC+
Sbjct: 199 RRCFHDDWDKIIDRLREQTDKKDSCFRYVPFHADKALLFIKDKDLAKLLCK 249

BLAST of CaUC06G117910 vs. ExPASy TrEMBL
Match: A0A5D3E0Y8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001820 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 53/146 (36.30%), Postives = 79/146 (54.11%), Query Frame = 0

Query: 2   KGRKCCILVLENTDKSGWVSFLSMITFKTETEVRKT----YYQESSSKRSDIASYTSHSD 61
           +GRKCCILV E  DK+GW  F  M+T K  ++ ++T    YY +   K     SY S +D
Sbjct: 102 RGRKCCILVPEGLDKTGWALFNDMLTCKKTSDKKETPTRHYYNQDKGKEKIQQSYDSSTD 161

Query: 62  EGSPKRTYAKVLSPQSSLA--------TSPRKNINDILYNSDTLKIED--EEDLGQTKST 121
             SP++TYA+ +S  SS +        T    ++    ++ D  KI D   +   +  S 
Sbjct: 162 SESPRKTYAEAVSSSSSSSSSESDCSKTKSTSSLKRRCFHDDWAKIIDRLRDQTDKKDSC 221

Query: 122 LKYKPFNAEKAIAFTKDKEQIKMLCR 134
            +Y PF+A+KA+ F KDKE  K+LC+
Sbjct: 222 FRYIPFHADKALLFIKDKELAKLLCK 247

BLAST of CaUC06G117910 vs. ExPASy TrEMBL
Match: A0A5A7TTA1 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001820 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 53/146 (36.30%), Postives = 79/146 (54.11%), Query Frame = 0

Query: 2   KGRKCCILVLENTDKSGWVSFLSMITFKTETEVRKT----YYQESSSKRSDIASYTSHSD 61
           +GRKCCILV E  DK+GW  F  M+T K  ++ ++T    YY +   K     SY S +D
Sbjct: 102 RGRKCCILVPEGLDKTGWALFNDMLTCKKTSDKKETPTRHYYNQDKGKEKIQQSYDSSTD 161

Query: 62  EGSPKRTYAKVLSPQSSLA--------TSPRKNINDILYNSDTLKIED--EEDLGQTKST 121
             SP++TYA+ +S  SS +        T    ++    ++ D  KI D   +   +  S 
Sbjct: 162 SESPRKTYAEAVSSSSSSSSSESDCSKTKSTSSLKRRCFHDDWAKIIDRLRDQTDKKDSC 221

Query: 122 LKYKPFNAEKAIAFTKDKEQIKMLCR 134
            +Y PF+A+KA+ F KDKE  K+LC+
Sbjct: 222 FRYIPFHADKALLFIKDKELAKLLCK 247

BLAST of CaUC06G117910 vs. ExPASy TrEMBL
Match: A0A5A7UN08 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001290 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 57/147 (38.78%), Postives = 75/147 (51.02%), Query Frame = 0

Query: 2   KGRKCCILVLENTDKSGWVSFLSMITFKTETEVRKTYYQESSSKRSDIASYTSHSDEGSP 61
           +GRKCC+LVLE     GWVSFLSMI    ETE +  +  +   K+ +IA+  S SD  S 
Sbjct: 45  QGRKCCVLVLEGDSTCGWVSFLSMIIPNVETEPKVRHPLDHFFKKRNIATIDSDSD--SS 104

Query: 62  KRTYAKVLS--------------PQSSLATSPRKNINDILYN--SDTLKIEDEEDLGQTK 121
           +++YA+V+S               Q S+   P KN   I      D  K+       QT+
Sbjct: 105 RKSYARVVSEGYSSDSSACSEIKKQRSVKLLPLKNAVVITRRLFYDDWKVIMNSLKRQTE 164

Query: 122 STLKYKPFNAEKAIAFTKDKEQIKMLC 133
           ST  Y PFNAEKA+   KD   +K LC
Sbjct: 165 STFTYHPFNAEKALIIFKDPWNVKSLC 189

BLAST of CaUC06G117910 vs. ExPASy TrEMBL
Match: A0A5D3D494 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00820 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.2e-10
Identity = 57/171 (33.33%), Postives = 81/171 (47.37%), Query Frame = 0

Query: 2   KGRKCCILVLENTDKSGWVSFLSMITFKTETEVR----KTYYQESSSKRSDIASYTSHSD 61
           +GRKCCILV E  DK+GW  F  M+T K  ++ +    + +Y +   K      Y S +D
Sbjct: 102 RGRKCCILVPEGLDKTGWALFNDMLTCKKTSDKKEISTRHFYNQDKGKEKIQKPYDSSTD 161

Query: 62  EGSPKRTYAKVLSPQSS--------LATSPRKNI--------------NDI--------- 121
             SPK+TYA+V+S  SS         +TS  K                NDI         
Sbjct: 162 SESPKKTYAEVVSSFSSSESDYSKAKSTSSLKRFLPALKSEIRKEERKNDIDWEKTIILS 221

Query: 122 --LYNSDTLKIED--EEDLGQTKSTLKYKPFNAEKAIAFTKDKEQIKMLCR 134
              ++ D  KI D   E   +  S  +Y PF+A+KA+ F KDK+  K+LC+
Sbjct: 222 RRCFHDDWAKIIDRLREQTDKKDSCFRYVPFHADKALLFIKDKDLAKLLCK 272

BLAST of CaUC06G117910 vs. ExPASy TrEMBL
Match: A0A5A7TRS9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003060 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.8e-10
Identity = 57/171 (33.33%), Postives = 81/171 (47.37%), Query Frame = 0

Query: 2   KGRKCCILVLENTDKSGWVSFLSMITFKTETEVR----KTYYQESSSKRSDIASYTSHSD 61
           +GRKCCILV E  DK+GW  F  M+T K  ++ +    + YY +   K      Y S +D
Sbjct: 79  RGRKCCILVPEGLDKTGWALFSDMLTCKKTSDKKEISTRHYYNQDKGKEKIQKPYDSSTD 138

Query: 62  EGSPKRTYAKVLSPQSSLAT--SPRKNI--------------------NDI--------- 121
             SP++TYA+V+S  SS  +  S  KN                     NDI         
Sbjct: 139 SESPRKTYAEVVSSFSSSESDYSKAKNTSSLKRFLPALKSEIRKEERKNDIDWEKTIILS 198

Query: 122 --LYNSDTLKIED--EEDLGQTKSTLKYKPFNAEKAIAFTKDKEQIKMLCR 134
              ++ D  KI D   E   +  S  +Y PF+A+KA+ F KDK+  K+LC+
Sbjct: 199 RRCFHDDWDKIIDRLREQTDKKDSCFRYVPFHADKALLFIKDKDLAKLLCK 249

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0044449.12.7e-1336.30hypothetical protein E6C27_scaffold46G001820 [Cucumis melo var. makuwa][more]
TYK29576.12.7e-1336.30hypothetical protein E5676_scaffold655G001820 [Cucumis melo var. makuwa][more]
KAA0055987.13.7e-1038.78LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK18363.11.1e-0933.33hypothetical protein E5676_scaffold456G00820 [Cucumis melo var. makuwa][more]
KAA0044557.11.4e-0933.33hypothetical protein E6C27_scaffold46G003060 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E0Y81.3e-1336.30DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TTA11.3e-1336.30DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7UN081.8e-1038.78LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3D4945.2e-1033.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TRS96.8e-1033.33DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G117910.1CaUC06G117910.1mRNA