CaUC06G117770 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G117770
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Ribonucloprotein
Location	Ciama_Chr06: 22294889 .. 22296775 (-)
RNA-Seq Expression	CaUC06G117770
Synteny	CaUC06G117770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCGATTGAAACAGAAAACCCTAGCTCTCTGTTGCCGTTCTTAAACCCTAATTCCAAAGTTTCATCTCCTCCTCCAAAGTCCTGAAAATCCTAACGTCTCTGCTTGCTTAATCTTCGTACAAACAATGGTACTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTGATACTGAGTGCAACTTTATGAATTTGTGATGTAAATTGGCAGACTGCAGAGAAAGTGAACCCCAAGGCATACCCTTTGGCCGACGCCCAACTTACAATCACCATTCTTGATCTTGTTCAACAAGCTGCTAACTACAAGCAAATCAAGAAGGGCGCCAATGAAGGTACACTTCTCTTCTTGTACCTTTTTCTTGACCAAACACTCAGAGATTTGTTTCTATTCTGTGGAATGATTCTTTATTTTGTGGGATTTTTCCAGCAACCAAGACGCTTAACAGAGGCATATCTGAGTTCGTTGTCATGGCCGCGGATACTGAGCCACTTGAAATCCTCCTCCATCTTCCTCTGTTAGCGGAGGATAAGGTGCTTTTCAATTCTCAAGAGAAGATTCTGTTTCTGTTTGGTGTCTTTATGCTTTTTCTGCTTGATGTGCTTTCTGGGTTTTGAGGCTACATGTACCAAGATAAGGGTGTGAAAAAATAACTGATACCCTTGTTCTTGACCTGCCAAAGAGGCTGTAGCTAAATCAGATTGAGAGAAGTTATCTGGCCGGTTGCTGTTCTCTGTCAACAAATCTGCTTACCGAACTTCTTACATTTTTCTTGCCTTTCCTTAATAAGATCAAAGATGTTTATTTACATTTCCCCCTTTAAATGACTAATTAAACATTATGGGAAGGGGAGAAGAGTGAAACTGCATGGATGTTTGGCTTTTCCGAAATTTCTGTCATCTTTCAGGCAAGCTGCACTTGTTCTTTCAGTACTTTGCATATACTGTTGTTTATATCTGTCATGATGTAGATCAGTAGATCGACTGACTCATTCAACTGTGATCCTCAGCCCCCCTCTAGTCTCTCTAATTGACATACCCCAATAAACTGCTCTAGGCCTTTCTCTTTGAAAGCTTCTTAGTGGGTGCTCATTTATTGGTAGCTTCTCATTCTGTATATGTATATATGAAATGTTATTAAGTATTCCAATAATTGCAACCTCCAAAAGCCAAAGACCACTCCCCAGCATAGCCTACAACCCCCTCTCAATTTGTGTTGATTACAAAAGGGGATTATTTAAAAATGTACCAATAGAGATAACCGTTTTTTGTTGTTTGATGGTTCTCTTGGCATGCTATCCTCAATTATTTTTTAAAACATAATGAATTAGGATAAGAAAACTTTCCCCATAATTGAAGTTTAGTTAGAATCAGTTAGCTTTTCTGCTGATTGGTATTTTATCTAGTCTTAGTTTCCCGCCAGGAGACTGATTTTTGAACATAGCTTCAGTGTATACTACTTTTAGTATAAAAGCAGGGGTATGTCAAAATCAGGTTATTGAATGTTTCCATTCAACATTTTGATGTCTGTTTCATAGTATTCTATCTGATTTTGCAGAATGTGCCCTATGTGTTTGTCCCGTCTAAGCAAGCACTCGGCCGAGCCTGTGGAGTTACAAGACCTGTTATAGCTTGTTCTGTGACAACAAACGAAGGAAGCCAATTGAAGTCGCAAATACAACAACTCAAGGTAATTGTGCCAGTATTAATTGACACCAGCAAATTTTCTTCCTTCTTTTTGTAAATGACCCTCCTGGTAACACGTTATGACCGTTCTTTTTGATATTTAGGATGCCATTGAGAAGCTCCTGATTTGAAGATTGTAGTCAATCATGATTTCGGTATGATGGGCTTCTTGGTTCATAGTGGTCGCTCCCTTAGAGGCTTTGACTGA

mRNA sequence

CGCCGATTGAAACAGAAAACCCTAGCTCTCTGTTGCCGTTCTTAAACCCTAATTCCAAAGTTTCATCTCCTCCTCCAAAGTCCTGAAAATCCTAACGTCTCTGCTTGCTTAATCTTCGTACAAACAATGACTGCAGAGAAAGTGAACCCCAAGGCATACCCTTTGGCCGACGCCCAACTTACAATCACCATTCTTGATCTTGTTCAACAAGCTGCTAACTACAAGCAAATCAAGAAGGGCGCCAATGAAGCAACCAAGACGCTTAACAGAGGCATATCTGAGTTCGTTGTCATGGCCGCGGATACTGAGCCACTTGAAATCCTCCTCCATCTTCCTCTGTTAGCGGAGGATAAGAATGTGCCCTATGTGTTTGTCCCGTCTAAGCAAGCACTCGGCCGAGCCTGTGGAGTTACAAGACCTGTTATAGCTTGTTCTGTGACAACAAACGAAGGAAGCCAATTGAAGTCGCAAATACAACAACTCAAGATTGTAGTCAATCATGATTTCGGTATGATGGGCTTCTTGGTTCATAGTGGTCGCTCCCTTAGAGGCTTTGACTGA

Coding sequence (CDS)

ATGACTGCAGAGAAAGTGAACCCCAAGGCATACCCTTTGGCCGACGCCCAACTTACAATCACCATTCTTGATCTTGTTCAACAAGCTGCTAACTACAAGCAAATCAAGAAGGGCGCCAATGAAGCAACCAAGACGCTTAACAGAGGCATATCTGAGTTCGTTGTCATGGCCGCGGATACTGAGCCACTTGAAATCCTCCTCCATCTTCCTCTGTTAGCGGAGGATAAGAATGTGCCCTATGTGTTTGTCCCGTCTAAGCAAGCACTCGGCCGAGCCTGTGGAGTTACAAGACCTGTTATAGCTTGTTCTGTGACAACAAACGAAGGAAGCCAATTGAAGTCGCAAATACAACAACTCAAGATTGTAGTCAATCATGATTTCGGTATGATGGGCTTCTTGGTTCATAGTGGTCGCTCCCTTAGAGGCTTTGACTGA

Protein sequence

MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKIVVNHDFGMMGFLVHSGRSLRGFD

Homology

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BLAST of CaUC06G117770 vs. NCBI nr
Match: XP_022144838.1 (NHP2-like protein 1 isoform X2 [Momordica charantia] >XP_022961071.1 NHP2-like protein 1 [Cucurbita moschata] >XP_023001012.1 NHP2-like protein 1 [Cucurbita maxima] >XP_023516369.1 NHP2-like protein 1 [Cucurbita pepo subsp. pepo] >XP_023529528.1 NHP2-like protein 1 [Cucurbita pepo subsp. pepo] >KAG7023526.1 NHP2-like protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.0 bits (598), Expect = 4.2e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

[Close]

BLAST of CaUC06G117770 vs. NCBI nr
Match: KAG6589855.1 (NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 235.0 bits (598), Expect = 4.2e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT
Sbjct: 802 MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 861

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 862 EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 921

[Close]

BLAST of CaUC06G117770 vs. NCBI nr
Match: KAG6587925.1 (NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 233.8 bits (595), Expect = 9.3e-58
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMA+DT
Sbjct: 103 MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 162

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 163 EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 222

[Close]

BLAST of CaUC06G117770 vs. NCBI nr
Match: QCE01736.1 (U4/U6 small nuclear ribonucleoprotein SNU13 [Vigna unguiculata])

HSP 1 Score: 233.8 bits (595), Expect = 9.3e-58
Identity = 119/127 (93.70%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLADAQLTITILDLVQQAANYKQ+KKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 IVVNHDF 128
            +  H F
Sbjct: 121 EMEEHTF 127

[Close]

BLAST of CaUC06G117770 vs. NCBI nr
Match: XP_022987905.1 (NHP2-like protein 1 [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 9.3e-58
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLL+EDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLSEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

[Close]

BLAST of CaUC06G117770 vs. ExPASy Swiss-Prot
Match: Q6P8E9 (NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 5.1e-51
Identity = 100/120 (83.33%), Postives = 110/120 (91.67%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT  +VNPKAYPLADAQLT T+LDLVQQAANYKQ++KGANEATKTLNRGI+EF+VMAAD 
Sbjct: 1   MTEPEVNPKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIAC+VT  EGSQLK QIQ L+
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIKEGSQLKPQIQSLQ 120

[Close]

BLAST of CaUC06G117770 vs. ExPASy Swiss-Prot
Match: Q5XH16 (NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-50
Identity = 99/120 (82.50%), Postives = 110/120 (91.67%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT  +VNPKAYPLADAQLT T+LDLVQQ+ANYKQ++KGANEATKTLNRGI+EF+VMAAD 
Sbjct: 1   MTEPEVNPKAYPLADAQLTKTLLDLVQQSANYKQLRKGANEATKTLNRGIAEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKPQIQSVQ 120

[Close]

BLAST of CaUC06G117770 vs. ExPASy Swiss-Prot
Match: Q3B8S0 (NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3)

HSP 1 Score: 196.1 bits (497), Expect = 2.8e-49
Identity = 97/120 (80.83%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQ++KGANEATKTLNRGISEF+VMAAD 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

[Close]

BLAST of CaUC06G117770 vs. ExPASy Swiss-Prot
Match: P55769 (NHP2-like protein 1 OS=Homo sapiens OX=9606 GN=SNU13 PE=1 SV=3)

HSP 1 Score: 196.1 bits (497), Expect = 2.8e-49
Identity = 97/120 (80.83%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQ++KGANEATKTLNRGISEF+VMAAD 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

[Close]

BLAST of CaUC06G117770 vs. ExPASy Swiss-Prot
Match: Q4R5C6 (NHP2-like protein 1 OS=Macaca fascicularis OX=9541 GN=SNU13 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.8e-49
Identity = 97/120 (80.83%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQ++KGANEATKTLNRGISEF+VMAAD 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

[Close]

BLAST of CaUC06G117770 vs. ExPASy TrEMBL
Match: A0A6J1KF93 (Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111495275 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.0e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

[Close]

BLAST of CaUC06G117770 vs. ExPASy TrEMBL
Match: A0A6J1CUC5 (Ribonucloprotein OS=Momordica charantia OX=3673 GN=LOC111014423 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.0e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

[Close]

BLAST of CaUC06G117770 vs. ExPASy TrEMBL
Match: A0A6J1H9B8 (Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111461690 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.0e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

[Close]

BLAST of CaUC06G117770 vs. ExPASy TrEMBL
Match: A0A6J1JI38 (Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111485307 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.5e-58
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLL+EDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLSEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

[Close]

BLAST of CaUC06G117770 vs. ExPASy TrEMBL
Match: A0A4D6MJR3 (Rab3 GTPase-activating protein catalytic subunit OS=Vigna unguiculata OX=3917 GN=DEO72_LG7g3036 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.5e-58
Identity = 119/127 (93.70%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLADAQLTITILDLVQQAANYKQ+KKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 IVVNHDF 128
            +  H F
Sbjct: 121 EMEEHTF 127

[Close]

BLAST of CaUC06G117770 vs. TAIR 10
Match: AT5G20160.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 218.0 bits (554), Expect = 4.9e-57
Identity = 110/120 (91.67%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQ+KKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLK 120

[Close]

BLAST of CaUC06G117770 vs. TAIR 10
Match: AT4G22380.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 217.2 bits (552), Expect = 8.4e-57
Identity = 109/120 (90.83%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLAD+QL+ITI+DLVQQA NYKQ+KKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTGEVVNPKAYPLADSQLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLK 120

[Close]

BLAST of CaUC06G117770 vs. TAIR 10
Match: AT4G12600.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 216.9 bits (551), Expect = 1.1e-56
Identity = 109/120 (90.83%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQ+KKGANEATKTLNRGISEF+VMAADT
Sbjct: 1   MTVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC VTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLK 120

[Close]

BLAST of CaUC06G117770 vs. TAIR 10
Match: AT5G20160.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 201.4 bits (511), Expect = 4.8e-52
Identity = 110/152 (72.37%), Postives = 114/152 (75.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANE------------------- 60
           MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQ+KKGANE                   
Sbjct: 1   MTGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEGIRLLLMCVCLSYLLSLMF 60

Query: 61  -------------ATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQA 120
                        ATKTLNRGISEFVVMAAD EPLEILLHLPLLAEDKNVPYVFVPSKQA
Sbjct: 61  VKLFLIYLNLFISATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQA 120

[Close]

BLAST of CaUC06G117770 vs. TAIR 10
Match: AT4G12600.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 191.4 bits (485), Expect = 4.9e-49
Identity = 109/175 (62.29%), Postives = 114/175 (65.14%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQ+KKGANEATKTLNRGISEF+VMAADT
Sbjct: 1   MTVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADT 60

Query: 61  EPLEILLHLPLLAEDK-------------------------------------------- 120
           EPLEILLHLPLLAEDK                                            
Sbjct: 61  EPLEILLHLPLLAEDKVFEFLLIVSLSYESQLVVSLALASFTGFTWVSSSYDKKIRLYWL 120

The following BLAST results are available for this feature:

BLAST of CaUC06G117770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144838.1	4.2e-58	100.00	NHP2-like protein 1 isoform X2 [Momordica charantia] >XP_022961071.1 NHP2-like p...	[more]
KAG6589855.1	4.2e-58	100.00	NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6587925.1	9.3e-58	99.17	NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
QCE01736.1	9.3e-58	93.70	U4/U6 small nuclear ribonucleoprotein SNU13 [Vigna unguiculata]	[more]
XP_022987905.1	9.3e-58	99.17	NHP2-like protein 1 [Cucurbita maxima]	[more]

BLAST of CaUC06G117770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6P8E9	5.1e-51	83.33	NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1	[more]
Q5XH16	1.1e-50	82.50	NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1	[more]
Q3B8S0	2.8e-49	80.83	NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3	[more]
P55769	2.8e-49	80.83	NHP2-like protein 1 OS=Homo sapiens OX=9606 GN=SNU13 PE=1 SV=3	[more]
Q4R5C6	2.8e-49	80.83	NHP2-like protein 1 OS=Macaca fascicularis OX=9541 GN=SNU13 PE=2 SV=1	[more]

BLAST of CaUC06G117770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KF93	2.0e-58	100.00	Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111495275 PE=3 SV=1	[more]
A0A6J1CUC5	2.0e-58	100.00	Ribonucloprotein OS=Momordica charantia OX=3673 GN=LOC111014423 PE=3 SV=1	[more]
A0A6J1H9B8	2.0e-58	100.00	Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111461690 PE=3 SV=1	[more]
A0A6J1JI38	4.5e-58	99.17	Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111485307 PE=3 SV=1	[more]
A0A4D6MJR3	4.5e-58	93.70	Rab3 GTPase-activating protein catalytic subunit OS=Vigna unguiculata OX=3917 GN...	[more]

BLAST of CaUC06G117770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20160.1	4.9e-57	91.67	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G22380.1	8.4e-57	90.83	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.1	1.1e-56	90.83	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G20160.2	4.8e-52	72.37	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.2	4.9e-49	62.29	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002415	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	PRINTS	PR00883	NUCLEARHMG	coord: 38..48 score: 87.27 coord: 82..94 score: 83.08 coord: 21..36 score: 60.0 coord: 8..21 score: 62.86
IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family	PRINTS	PR00881	L7ARS6FAMILY	coord: 54..67 score: 48.7 coord: 35..49 score: 46.06 coord: 70..80 score: 59.09 coord: 80..94 score: 51.21
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 23..111 e-value: 2.5E-26 score: 91.2
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 1..125 e-value: 7.6E-55 score: 186.0
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 5..119
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 4..124
None	No IPR available	PANTHER	PTHR23105:SF158	NHP2-LIKE PROTEIN 1	coord: 4..124
IPR004037	Ribosomal protein L7Ae conserved site	PROSITE	PS01082	RIBOSOMAL_L7AE	coord: 73..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G117770.1	CaUC06G117770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0031428	box C/D RNP complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005840	ribosome
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0005096	GTPase activator activity
molecular_function	GO:0003723	RNA binding