CaUC06G117730 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G117730
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPhenylalanine--tRNA ligase beta subunit
LocationCiama_Chr06: 22239409 .. 22247862 (+)
RNA-Seq ExpressionCaUC06G117730
SyntenyCaUC06G117730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTGGCTTCTGGTTTTGGATTCGAAGTCTGGAGTTGAGAACCTCGAGTTTGTATAACTTCAAATGATAACCACTCACAATGTTGTTTGATTTATATGCAAAGTTCGAGGTTATTTTAGGACTTTTGCAAACACTCACGAATAAGGTAACTGTACGAATAATTTCAACCAAGAGCTTAATTAAAAAGATGAATAACTCTTAGATCTAACTTATAATCTATGATAGTCGCTCTTAGACCTCACGACAATTCACTCGGATTAAAACTAATCCAATGAATCGGTTTAATCATGATCAAATTAGCAAGATTTGAAAAAAAGAAAGGAAAAAAAAAAAAAAAACACCAAAGAGGTTGAATAAACACAATGTTTTTAATACCACTATTTTGAGTTTTGAAGAGCATTATAAGTCATTTTAAAGGTCAAATATAGACGTTTAAAGGTCCAAGAACTCAAAAGTCACTAAAATATTGTAGACAATAAGACCTAGGAAATTAAAACTTATTTAATTTGCATATTAATTGAGAAACAAAAAATGTAAAACTAAAAAGGTAAACATACTTCAAATAGCCTTAAATAACTACTCTAGAAGGCAACAAAGTAGATGTGCACGTTTGACAAGGTTTGATATCACAAATTTATATGTAGTGCACACTTGACAACACTTTCTTCACAATTTTTGCACAGTTGTTTTGCCCTCGGTGTCATCTTCCAAATTATACGACTTTTGCCATGTCACACTTCATTCTCTTCTATACTCATTATAATAACATTATATACATCAATTTCGACTTGAAAATCTGTCTTTTCTTGTGCATTAGCTAGCCTATGAAGATGGTAGTTTGAAAGCTTCTTGAATGTTTTTTGTCTTGCTTCTTGTAATACCCAAGTTACCCTACCAAACTTAGGACATGACATGTCGACAATAGATTCCAATGAGACTATGAAATTTATTATTTGATCTTATAAAAACTAAATACATTTTAGAAAACATGTGGCCAGCAAAAACCTTCGTAATGAAAATTTTTAGAAACATTCGGCAGAGTTTATCCTAAAAATTGGATAAACCACACCTGCAAGAAAACTCTTTAAACACTCCCAAAATATTTGTTTTAAATCAACCACTAAGTGTCCCACCACACACTCTTCAATAGAATCCAAATCACAACACTCCAACCACATCATGAAAATTTAAGAAGAGGAAACATACAAGTTTTAGTTTACAAACCATTTGAAATTAAGGATGTCTACTTTAGTTACAAGCCAAAACAATGATATCAAAATACAAATTCAAAAATTGTGAAATCTAATTGAAGTTGGTGGCAGATCTCTAACACTTGTGGCCGTTGGAACTTCAAACGCTACCTGGTGGAAAATTTAAGAAAAAAAGAATGAGCTAAAAAGCCCAGTTAGTGGTGAGAATTCATAAGAAAATAAGTTTAAACGATCCTCTTCAAATTTTCAATAGAAGTTTGGAATTCTGTAAAATAATGAAAACCATAAACGAATTCAAACTCAAGATAATTAAAACATCTAGAAGTTCTGCCTAGGTAACTCTTGAAAATATAGTAATGAGTTGGTAAAACCCATCACCAAATCTATACCCAAATCTCTAGTCATACTGGCACGAAAAAAATCTTAATAGGCAGAGCAGAGCAATCTTTAGTTATACTATACATCAAGTAGTCTCAAGATACATAGTAAAGCAATTTCTAGTCATACTATACACTGAGAAATCTCTAAGTACATAGCAGAGATAATCTTTGATCATACTATGAACCGAGTAATCTCTAAGTACAACAAAGAGAATCTCTAGTCATATTATGCATTGAGTAATCTCTAGGTACATAGCAGAGCAAATCTCTAGTCATACGTGCACACACAACAACCCCCCAAAGAGCAAAGCACCCTAACACATGACCGAAAGCCTATATGTGTGTGCCAACGTAGGCCCCAAAGAGACCTCATACATATCATATCCACACTAAGGAAATAAATTCTTAAAAAGAAAGTATTTGCTAGCCACCTATTTTGAAAAATGTTTTAGAGTTTGACAATTATGAATTTCATAAATTAATTAGAATCTATTGTCATCATACCACGTCTTAGCTAGGTTTGGTAGGGTAACTTGGAGCAGAGTGTGACAAATAGTTCTTTTGGGTATATGTAATGAATTAATGGTTGGATTCACATCATCATATCGTTGATAATAGTATGAGAAAAATACTTGTTTTGATTGCTATGTTTTGAGTTTAGTTACCATTTGATGTTTGCGCTTTAAAATATTATAGATTTAGTTTTTAAGTTTTGAGTATGGTTTCAATTTAATCATAAAAGTTTAAAGTGTTACTAAGTTTAGTCTTAAAATTTGAGTTTTGGTTAAGTTGATTTAGCACACAAGTGTATTAATCACTTTCCTTGATAAAAGGAAACTAGGTAAGAAAGTAGTCAAGCTTAGGCTTGCATCCTTGTTGGGTTTCTTTTGATTATGAATTCCATTACCATCCTTTTCCGTTCTCCTTGATGATAAAAGGTCATTTTTCCCTCATTGGAGGTTTAATTTCCTTCAAGAGATTCTCTTTCCCTCTCTTATCTATTAATTCTTAATTATAACTTTATTGCTCTAAACGTCTCTACCAACTTCTCCATGATGCTGAATCTTTCAACTACTTAACTCTGTTAATTAATTATACTTCCAAATAACAAAAGAAAAAATAATCAACATCTCTTCTAATCTATATCTTACATACCAAAAATGACTTAAATATAAAAATTAGATTTCTCTATAACTATGTTGAAGTAGGTAAAAAAAATATCTTATCAAAATAATTTATGTACAAATATCCTACCGTTTCTTTGGACTCCAACATATTCTAGAATTCCTTTAGATATGAATATATTGGTAAAAGTATTTAGATATTTTATATCCAAGAAGAGCCTAGATTTTATTATTATTAGTATTTTTCTTGGTTTTCAAGGATTTCATATCTATAAATTATAAGGTGTGTCTCCATATGTAAGCCAAGTTAGAGAACGCTAGACAAATTTAGAAGTGCCCATATTTGTACTTTTTTAAAATAAAAGTTTCTTTCTTCCAAAAGTGTTTCTCTCTTTCTTTGTATGCCAATTTCTTCAAGGTAGTAATAAGGCCAAGCTAGCATAGTTTGTTGTTGTGAAGCTTCTAAAGATTGGTATAGATTGGACTGTGAAGCTTATTGTCTGGGACGCAACTACTTGTGGAATGCATTTATTACTATAAGATGATGGAAGACTTTTAAGTTATTGAATGAATCAAGAAGTTCAACACTCTAAACTACAAAATATGATCTACACAAATGAAGTTGTGTATCCCAAGGCCAAGACTTGTGGGATATATGTTGTGGGAGGCACTAATTTCAAGTCACCTAGAGATGCTACAACTTTGAAGAAATGGAAGGCAGGTAAAGGCCATGTTTGTAAATCAAATTGGGAGATAACCATCAATTGGTACTTCGAGAAAGATAAAACTCTATATATTGAAATCTCTAAATTACATCTAGGTTGCTATTTCATAATTGAGAATGAGAAGAATTATAATTTATGGTCTTAAACATGAATATAAAAGTTCAATTGGTTTTATTTAAAGTTGGGCACTTCAACTAGCCTTGAAAATATTCTTGGTAGCCGAGAAGCATGAGTTCATCAGTCACAGTCATATTAAAGAGCATTAGTGAAAATTGCTCTTTAGTGGAAGAAAGAAAATGAAAAAATAAAAATAAAAACTCTGTTTAATAGTGTTCAACCAGATTTCGAAGAGAAATTTAATTTTTTTTTTTTTAATGAACTTGTATTTATAAAAATTTTAGTGGTGTGAGTACAGTATCTATTAAATGGTCTTTTAATACTTTCTCTCGAAAAGTAAACTTATCTCGAGGGATTTGTAGCTTGTTCTTAATGCTGATTTGTTTCAAAGGTTTTGCAACTTGTTCTCGAATGTGGATTTATCTCGAGGGCTTTGACCATGTTGATTTATCTTGAGGGTTGTGCAACTTGTTTTTCATGTTGATTTATCTCGAGGGCTTTACAACTTATTCTCGATGTTGATTTATCTTGAGGGTTTTACAGCTTCTTCTCAAACGTGGGTTTATCTCGAGGGCTTTGCAATTTCTTCTTGATGTTGATTTATCTCAAGAGCTTTGCAACTTGTTCTTGAACGTAGATTTATGCAGATATGGTTAGAACCCTAGTATTTGATCCTTTGATTCTCTCTGTTTTATGCATACATTTGATTTGAAGAAGCGAAACGTAGGAATGTTTTTCAAGTTGAATTCTTGAAAGAATGTTTGTATCTTCAGGAAACTTGTATCTTCAAAGAGTATTTAGCTTTAGGAGTTCGAAAGTTTTGGAGTTAGAAAGTTTTCTGATTGCTGGAAGAATTCTCTCTAGGCTCTCTAAAATCTAAAATTTCTGAACAAAGAGAACTCCTCTAGGGATGTTTAAATAACTCGACAACCAGAACAATCTAGACTAACCAACCCAAACGATAAAGGTGAGGTTGGGTTGAAATATTTCTATTTTAGTTATTAGTCATTTGTTGTAGATAAATTTTAAGTATTTTAAATTAATTAATTAATTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATTAAAAGTTGACATGATTCCACATGTTTTCGTCATGATTGTTGGATCTAATAAAATAATTTGGTTCAATTTGTTATTAGTCATTTGTTGTAGATAAATTTTAAGTATTTTAAATTAATTAATTAGTTAATAATAATAATAATAATAATATTAATTAAAAGTTGACATGATTCCACATGTTTTCGTCATGATTGTTGGATCTAATAAAATAATTTGGTTCAATTTGTTATTAGTCATTTGTTGTAGATAAATTTTAAGTATTTTAAATTAATTAATTAGTTAATAATAATAATAATAATAATATTAATTAAAAGTTGACATGATTCCACATGTTTTCGTCATGATTGTTGGATCTAATAAAATAATTTGGTTCAATTTGTTATTAGTCATTTGTTGTAGATAAATTTTAAGTATTTTAAATTAATTAATTAGTTAATAATAATAATAATAATAATATTAATTAAAAGTTGACATGATTCCACATGTTTTCGTCATGATTGTTGGATCTAATAAAATAATTTGGTTCAATTTGTTATTAGTCATTTGTTGTAGATAAATTTTAAGTATTTTAAATTAATTAATTAATTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAACAAAGTTTGGGTTGAGCTTAATTGGACTTAAGCCCAAATATTAATATCAAATTGAACCAAATTATTTTATTAGATCCAACAATCATGACGAAAACATGTGGAATCATGTCAACTTTTAATTAATCTAAAATTTAATAATTTGTAATTCAATCATAAATTAGATAGGAATTTGAGATTTGTCCAAAATTTTAGGGAAGCAAATAGTCTTTTATTAATTTTAGTGAGTAGAATTGTGAAAATAGGTGATCACCATCCAACCTCAAAATTAGCTCTTCTTCTTGTGAGGATGCTTGTGAGGATGCTTGCTCTTTAGCTCTTCTTCTTCTTCTCAATTTCCCAACGCAAGCGGAGAACCGCTCTAAGGCTAAAGTGACAGTGTGACACCATCACAATGACCGACATATTAATTTCTTCAGTTAGGGCTTCCATTCTCTACGTTTCGATCACTCCAAATGTTACCGACAAGAATCCTGGGAGGTTGCCAGAGAAGAGCGAAGGAGGAGGGAGGGGGGAATTTAATGAAGACCTAATTCAACTTCGTCGAGTTAATAATTTTCGTAAAGACTACATAGATGACTTTGCAAATTCTGCTCGTCTTTTTCAGTAATGTCTTTTCGCATATTCTTCTTCTTCTTCTTCTTCTATATCATCAATTGTATTCTTCTTTTTAGTTAGAGGATAATGTTTGGACCCCCTTTTTCTTGTTTCAAAAGGACTTGAACTTTCCTGCCGACCATTCAATATTCTCCAAAATCTTCACATTGTGATTTGGACCATTGTGTGGATTCGTGTAGTTTATGGGGATAAAAGAATTCTATATTCCAAAAATTATTTGCGAGCCGACAATCCACTCCAATCTGAGATATACTGGAATTGATCATGGGCTACTTTTTTTCAGAAGAGCTTCAGATTTAGTTAAAATTGTTACTGAACAGAGGGAAAAGGGGATCATAACAGTTAAACCTATGATCTGGAATTTGATATCCCTTAACCCCAAGTAAAAGTTAGGTTTTGAATCTGATAGAATTGCTAAAGAATGAGATTTGCGGCAGTGATGAGTGGAACTGGCATTACTTTATACATAAAGCATGTTACATTCTCAATCCAAACTGTCGATGATAATGTAGAGTACAGGAGAAGGCTGAAAGGAAAGTCAAAACATTACATAACACTTGGTTTGTTTCTCTTATAGTGCTCATTAGCATTTCTCTTCAGCCAAGTTGCCATTGACTATGCCATTATTTTGGAAGTCTTTGCGCTTTTGTGGCATATACCAGATAACACATACTAGAAAAGCAACAAAGTTTATGACGCTTAATATGGTCAATAGGCCATAGAAGCAGTCAAGTCTGCCATAATTTATATTGTCTGCAAGCCAGCCTTCTCCATCGTTTCCTGTCACCCTTTTTACAACCGAAACCAAGAAACTACTAATGAAAAACCCGAGTGATAAAGTTGAGAGGAAGAGACCGGTACTCATAGTTTTCATTCCTTTGGGAGATTTGGTTATGAAGAAATCAAGTTGTCCTGTGTATATGAAGGCTTCACCAGAACCCACCAAGAAAAATTGTGGGATCAATAAGAACACACTTATAGGCAGGGTAGCTGTGTCGCCACCGACTGCTTTTGCCACTGCCAACCTTTTCCTCTCAGCTAGTGCTGCTGCTGCCATTCCAAGTATTGACAGGACAAGGCCTATGGCCATTCTCTGTATGTTTGTGAAACCTGTGAAATAAGAACATAACTAATTCAGGACTCTATGAAGTTGTATATACTTGAAATATACTTGAAGAAATGTTTATAGAATTAGAGATTAGATGGATCTTAATTTACCTTGTTTTCCCTTCCATTTCTTCCAAAGAGGCATGATAAGACGGTCATAAACGCCCAGAGTTATTAGTATGGCTGCTACGAAGAAGACAGTGAGAGAGCCTGCTGGGATTTGGAAAGATCCAATCGATCTTTCCATGGTGGATGCTTGTTGAACTGAGAAAGTGATCATCTGGGCATATGTAGTCCAGAAGATGATGGTTGTGGCCCATATTGGCAGCAGTCTTGCCATCATTTTCACCTCCTCCACTCTCGTCACTGAGCTTAGCTTCCATGGATTTAGCACTGAAACGGCTCCATGCGTCTCAAAATCTCCTTCTGCAACAATAGCTGCCTTGTCCAACAATCTATACAAAAAGGAATCACAAATCAATTTACTTGAAGAATTCTTTGTGGAAAGATTAATTTCATGAAGTTCACTTGATGTTCCTTTTAAAATCTTGCATATTTAACATTAATCAACTAAACTAAGACTTTAGCAAATAGTCGTTTTTGTATACTATGCCTTCGATTGATAGAATTATTTGAAAATTGTAGATTATCAATGAACTTACTGGAATTGTTTTGTGTGCTCAATTCTTGATGCCTGGTCAGAAGATTCCTCATAAAGCAAACCAACATTCTGAGGAAGCTCCAGTTTTCTCTTCTTGATTGCAGCAGCAATGACTTGTAGAATATGAACTACAGGGCTCCCCATGCTCTTCTTGTATCTATACTTCTTGGTCCCCGAAAGGAACAACAAAATCGCGACAAGCATCGATGCAGAACAAATCCCATACGCCCAACTCCGACCCACTTCATCTTGAATGTAAACCAGCACTGTGACAGCCATCAAAGTCCCAGTGCTGATAAAGAAGAAGAACCTGTTAAAGAAATAGGCCATCTTAGCTTTTTCCTTCTCATCTGTCTCATCAAACTGGTCTGTTCCGAAACCCGAAATGCTTGATTTTAGGCCACCGGTCCCCAAAGCAATTAGATACAAAGCCAGGTATAGAATTCCCATTTGAAAACCATTTGCTTCCTTGCAGGTTTTGGTGCCATCGCATGGCGGCGGACGAAGCTGTGGCAGTTTTGTTGAAACTGCAAGTGCAGCAGTCCCCTATAGTACGAAATTTTAAACCATTGTTACTTACTATCTAAATCAACAACCACTATATTATCTCTAAAGTTCATTGATTCGATTTTTACTTTGATGAACTTACAAGTGTTTGAATTAAGGCAGAGATGAGAATGGTGTAATATCGGCCAAGGAAAGAATCAGCAAGAAAGCCTCCAAGCAAACAGAGGAGAAAGCAAGTTCCCATGAAATCAGTAACGATGTTGGCTGA

mRNA sequence

ATGGTTCAACACTCTAAACTACAAAATATGATCTACACAAATGAAGTTGTGTATCCCAAGGCCAAGACTTGTGGGATATATGTTGTGGGAGGCACTAATTTCAAGTCACCTAGAGATGCTACAACTTTGAAGAAATGGAAGGCAGTTAGGGCTTCCATTCTCTACGTTTCGATCACTCCAAATGTTACCGACAAGAATCCTGGGAGGTTGCCAGAGAAGAGCGAAGGAGGAGGGAGGGGGGAATTTAATGAAGACCTAATTCAACTTCGTCGAGTTAATAATTTTCGTAAAGACTACATAGATGACTTTGCAAATTCTGCTCGTCTTTTTCAAAGAGCTTCAGATTTAGTTAAAATTGTTACTGAACAGAGGGAAAAGGGGATCATAACAGTTAAACCTATGATCTGGAATTTGATATCCCTTAACCCCAAAATGAGATTTGCGGCAGTGATGAGTGGAACTGGCATTACTTTATACATAAAGCATGTTACATTCTCAATCCAAACTGTCGATGATAATGTAGAGTACAGGAGAAGGCTGAAAGGAAACCAGCCTTCTCCATCGTTTCCTGTCACCCTTTTTACAACCGAAACCAAGAAACTACTAATGAAAAACCCGAGTGATAAAGTTGAGAGGAAGAGACCGGTACTCATAGTTTTCATTCCTTTGGGAGATTTGGTTATGAAGAAATCAAGTTGTCCTGTGTATATGAAGGCTTCACCAGAACCCACCAAGAAAAATTGTGGGATCAATAAGAACACACTTATAGGCAGGGTAGCTGTGTCGCCACCGACTGCTTTTGCCACTGCCAACCTTTTCCTCTCAGCTAGTGCTGCTGCTGCCATTCCAAGTATTGACAGGACAAGGCCTATGGCCATTCTCTGTATGTTTGTGAAACCTAAGATGATGGTTGTGGCCCATATTGGCAGCAGTCTTGCCATCATTTTCACCTCCTCCACTCTCGTCACTGAGCTTAGCTTCCATGGATTTAGCACTGAAACGGCTCCATGCGTCTCAAAATCTCCTTCTGCAACAATAGCTGCCTTGTCCAACAATCTATACAAAAAGGAATCACAAATCAATTTACTTGAAGAATTCTTTATTATCAATGAACTTACTGGAATTGTTTTGTGTGCTCAATTCTTGATGCCTGGTCAGAAGATTCCTCATAAAGCAAACCAACATTCTGAGGAAGCTCCAAATATGAACTACAGGGCTCCCCATGCTCTTCTTGTATCTATACTTCTTGGTCCCCGAAAGGAACAACAAAATCGCGACAAGCATCGATGCAGAACAAATCCCATACGCCCAACTCCGACCCACTTCATCTTGAATGTAAACCAGCACTGTGACAGCCATCAAAGTCCCAGTGCTGATAAAGAAGAAGAACCTGTTAAAGAAATAGGCCATCTTAGCTTTTTCCTTCTCATCTGTCTCATCAAACTGGTTTTGGTGCCATCGCATGGCGGCGGACGAAGCTGTGGCAGTTTTGTTGAAACTGCAAGTGCAGCAGTCCCCTATAGCAGAGATGAGAATGGTGTAATATCGGCCAAGGAAAGAATCAGCAAGAAAGCCTCCAAGCAAACAGAGGAGAAAGCAAGTTCCCATGAAATCAGTAACGATGTTGGCTGA

Coding sequence (CDS)

ATGGTTCAACACTCTAAACTACAAAATATGATCTACACAAATGAAGTTGTGTATCCCAAGGCCAAGACTTGTGGGATATATGTTGTGGGAGGCACTAATTTCAAGTCACCTAGAGATGCTACAACTTTGAAGAAATGGAAGGCAGTTAGGGCTTCCATTCTCTACGTTTCGATCACTCCAAATGTTACCGACAAGAATCCTGGGAGGTTGCCAGAGAAGAGCGAAGGAGGAGGGAGGGGGGAATTTAATGAAGACCTAATTCAACTTCGTCGAGTTAATAATTTTCGTAAAGACTACATAGATGACTTTGCAAATTCTGCTCGTCTTTTTCAAAGAGCTTCAGATTTAGTTAAAATTGTTACTGAACAGAGGGAAAAGGGGATCATAACAGTTAAACCTATGATCTGGAATTTGATATCCCTTAACCCCAAAATGAGATTTGCGGCAGTGATGAGTGGAACTGGCATTACTTTATACATAAAGCATGTTACATTCTCAATCCAAACTGTCGATGATAATGTAGAGTACAGGAGAAGGCTGAAAGGAAACCAGCCTTCTCCATCGTTTCCTGTCACCCTTTTTACAACCGAAACCAAGAAACTACTAATGAAAAACCCGAGTGATAAAGTTGAGAGGAAGAGACCGGTACTCATAGTTTTCATTCCTTTGGGAGATTTGGTTATGAAGAAATCAAGTTGTCCTGTGTATATGAAGGCTTCACCAGAACCCACCAAGAAAAATTGTGGGATCAATAAGAACACACTTATAGGCAGGGTAGCTGTGTCGCCACCGACTGCTTTTGCCACTGCCAACCTTTTCCTCTCAGCTAGTGCTGCTGCTGCCATTCCAAGTATTGACAGGACAAGGCCTATGGCCATTCTCTGTATGTTTGTGAAACCTAAGATGATGGTTGTGGCCCATATTGGCAGCAGTCTTGCCATCATTTTCACCTCCTCCACTCTCGTCACTGAGCTTAGCTTCCATGGATTTAGCACTGAAACGGCTCCATGCGTCTCAAAATCTCCTTCTGCAACAATAGCTGCCTTGTCCAACAATCTATACAAAAAGGAATCACAAATCAATTTACTTGAAGAATTCTTTATTATCAATGAACTTACTGGAATTGTTTTGTGTGCTCAATTCTTGATGCCTGGTCAGAAGATTCCTCATAAAGCAAACCAACATTCTGAGGAAGCTCCAAATATGAACTACAGGGCTCCCCATGCTCTTCTTGTATCTATACTTCTTGGTCCCCGAAAGGAACAACAAAATCGCGACAAGCATCGATGCAGAACAAATCCCATACGCCCAACTCCGACCCACTTCATCTTGAATGTAAACCAGCACTGTGACAGCCATCAAAGTCCCAGTGCTGATAAAGAAGAAGAACCTGTTAAAGAAATAGGCCATCTTAGCTTTTTCCTTCTCATCTGTCTCATCAAACTGGTTTTGGTGCCATCGCATGGCGGCGGACGAAGCTGTGGCAGTTTTGTTGAAACTGCAAGTGCAGCAGTCCCCTATAGCAGAGATGAGAATGGTGTAATATCGGCCAAGGAAAGAATCAGCAAGAAAGCCTCCAAGCAAACAGAGGAGAAAGCAAGTTCCCATGAAATCAGTAACGATGTTGGCTGA

Protein sequence

MVQHSKLQNMIYTNEVVYPKAKTCGIYVVGGTNFKSPRDATTLKKWKAVRASILYVSITPNVTDKNPGRLPEKSEGGGRGEFNEDLIQLRRVNNFRKDYIDDFANSARLFQRASDLVKIVTEQREKGIITVKPMIWNLISLNPKMRFAAVMSGTGITLYIKHVTFSIQTVDDNVEYRRRLKGNQPSPSFPVTLFTTETKKLLMKNPSDKVERKRPVLIVFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSIDRTRPMAILCMFVKPKMMVVAHIGSSLAIIFTSSTLVTELSFHGFSTETAPCVSKSPSATIAALSNNLYKKESQINLLEEFFIINELTGIVLCAQFLMPGQKIPHKANQHSEEAPNMNYRAPHALLVSILLGPRKEQQNRDKHRCRTNPIRPTPTHFILNVNQHCDSHQSPSADKEEEPVKEIGHLSFFLLICLIKLVLVPSHGGGRSCGSFVETASAAVPYSRDENGVISAKERISKKASKQTEEKASSHEISNDVG
Homology
[Close]
BLAST of CaUC06G117730 vs. NCBI nr
Match: CAA7408874.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 106.3 bits (264), Expect = 8.4e-19
Identity = 77/189 (40.74%), Postives = 89/189 (47.09%), Query Frame = 0 

Query: 201 LLMKNPSDKVERKRPVLIVFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGR-V 260
           LL K PSD VERKRPVL VFIPLG+           M ASP PT+KNCGI+  TL+G   
Sbjct: 2   LLTKKPSDSVERKRPVLTVFIPLGE----------RMNASPAPTRKNCGISAKTLMGSGP 61

Query: 261 AVSPPTAFATANLFLSASAAAAIPSIDRTRP----------------------------- 320
              PPT +ATA+   S +AAA +P++DR  P                             
Sbjct: 62  PPPPPTLWATASRITSTTAAATMPAVDRISPSPINCKSVNPATSGINSLNTQHSFTVIRI 121

Query: 321 -----------------------------MAILCMFVKPKMMVVAHIGSSLAIIFTSSTL 331
                                          I+C +V  KMMVVAH GSSL IIFTSS L
Sbjct: 122 APTKKTVSDPAGISKWPIDLRMVDACSTEKVIICAYVVQKMMVVAHTGSSLIIIFTSSIL 180

[Close]
BLAST of CaUC06G117730 vs. NCBI nr
Match: OAY81728.1 (hypothetical protein ACMD2_20683 [Ananas comosus])

HSP 1 Score: 102.1 bits (253), Expect = 1.6e-17
Identity = 57/104 (54.81%), Postives = 69/104 (66.35%), Query Frame = 0 

Query: 187 PSFPVTLFTTETKKLLMKNPSDKVERKRPVLIVFIPLGDLVMKKSSCPVYMKASPEPTKK 246
           P  PVTL T +T   L KNPS+ V R  PVL+VFIP G    KKSSCP+Y+KASP PT+K
Sbjct: 58  PPLPVTLCTIDTSTELTKNPSESVLRNNPVLMVFIPFGHSRKKKSSCPMYVKASPAPTRK 117

Query: 247 NCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSIDRTRP 291
           NCGI++NTL  R+  S     AT    +S  AAAAI  ++RTRP
Sbjct: 118 NCGISQNTL-SRIVESFGLDRATFRRLISVRAAAAIARMERTRP 160

[Close]
BLAST of CaUC06G117730 vs. NCBI nr
Match: RWW28438.1 (hypothetical protein GW17_00007083 [Ensete ventricosum])

HSP 1 Score: 100.1 bits (248), Expect = 6.1e-17
Identity = 52/82 (63.41%), Postives = 59/82 (71.95%), Query Frame = 0 

Query: 219 VFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASA 278
           VFIP GD VMKKSSCPVYM ASP PT +NCGIN  TL+G V V    + AT + F SASA
Sbjct: 87  VFIPFGDRVMKKSSCPVYMNASPAPTNRNCGINVKTLMGSVVVPLGASRATESRFTSASA 146

Query: 279 AAAIPSIDRTRPMAILCMFVKP 301
           AA IP I++ RP+ ILC  VKP
Sbjct: 147 AATIPMIEKLRPIPILCRLVKP 168

[Close]
BLAST of CaUC06G117730 vs. NCBI nr
Match: KAE8688789.1 (hypothetical protein F3Y22_tig00110956pilonHSYRG00228 [Hibiscus syriacus])

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-13
Identity = 70/159 (44.03%), Postives = 81/159 (50.94%), Query Frame = 0 

Query: 228 MKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSIDR 287
           MKKSS PVYMKASP PT+KNCGI KNTLIG V V      AT N F+SASAAAAIP+ DR
Sbjct: 1   MKKSSWPVYMKASPAPTRKNCGIRKNTLIGSVVVVVSLVLATDNRFISASAAAAIPNDDR 60

Query: 288 TRPMAILCM-------------FVKPKMMVVAHIGSSLAIIFT-------SSTLVTELSF 347
           TRPMAIL               F +  MM  ++    + I  T             + S 
Sbjct: 61  TRPMAILWKNFRCHMLTWFPFHFFQTGMMRRSYTARVINIATTKRRPKYDGCDPYWQKSH 120

Query: 348 HGF-------------STETAPCVSKSPSATIAALSNNL 354
           H                 ET   +SKSPSAT+A+LS  L
Sbjct: 121 HHLDLFHPCHRAKFPCGAETTTFLSKSPSATMASLSKKL 159

[Close]
BLAST of CaUC06G117730 vs. NCBI nr
Match: CAA2632558.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 86.7 bits (213), Expect = 6.9e-13
Identity = 70/171 (40.94%), Postives = 81/171 (47.37%), Query Frame = 0 

Query: 201 LLMKNPSDKVERKRPVLIVFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGRV- 260
           LL K PSD VERKRPVL VFIPLG+           M ASP PT+KNCGI+  T I    
Sbjct: 2   LLTKKPSDSVERKRPVLTVFIPLGE----------RMNASPAPTRKNCGISAKTRITSTT 61

Query: 261 -------------------AVSPPTA---------------FATANLFLSASAAAAIPSI 320
                              +V+P T+                A     +S  A  +   I
Sbjct: 62  AAATMPAVDRISPSPINCKSVNPATSGINSLNTQHSFTVIRIAPTKKTVSDPAGISKWPI 121

Query: 321 DR------TRPMAILCMFVKPKMMVVAHIGSSLAIIFTSSTLVTELSFHGF 331
           D       +    I+C +V  KMMVVAH GSSL IIFTSS LVTE SFHGF
Sbjct: 122 DLRMVDACSTEKVIICAYVVQKMMVVAHTGSSLIIIFTSSILVTEQSFHGF 162

[Close]
BLAST of CaUC06G117730 vs. ExPASy TrEMBL
Match: A0A7I8LI44 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_15019552 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-19
Identity = 77/189 (40.74%), Postives = 89/189 (47.09%), Query Frame = 0 

Query: 201 LLMKNPSDKVERKRPVLIVFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGR-V 260
           LL K PSD VERKRPVL VFIPLG+           M ASP PT+KNCGI+  TL+G   
Sbjct: 2   LLTKKPSDSVERKRPVLTVFIPLGE----------RMNASPAPTRKNCGISAKTLMGSGP 61

Query: 261 AVSPPTAFATANLFLSASAAAAIPSIDRTRP----------------------------- 320
              PPT +ATA+   S +AAA +P++DR  P                             
Sbjct: 62  PPPPPTLWATASRITSTTAAATMPAVDRISPSPINCKSVNPATSGINSLNTQHSFTVIRI 121

Query: 321 -----------------------------MAILCMFVKPKMMVVAHIGSSLAIIFTSSTL 331
                                          I+C +V  KMMVVAH GSSL IIFTSS L
Sbjct: 122 APTKKTVSDPAGISKWPIDLRMVDACSTEKVIICAYVVQKMMVVAHTGSSLIIIFTSSIL 180

[Close]
BLAST of CaUC06G117730 vs. ExPASy TrEMBL
Match: A0A2N9IA49 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48811 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-18
Identity = 68/130 (52.31%), Postives = 83/130 (63.85%), Query Frame = 0 

Query: 228 MKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSIDR 287
           MKKSS PVYMKASPEPTKKNCGI + TLIG++ V  PTAFAT N FLS  AAAAIP +DR
Sbjct: 1   MKKSSWPVYMKASPEPTKKNCGIKRKTLIGKLEVVRPTAFATDNRFLSHRAAAAIPKVDR 60

Query: 288 TRPMAILCMFVKPKMMVVAHIGSSLAIIFTSSTLVTELSFHGFSTET-APCVS-KSPSAT 347
           T P+AILC FVKP +  VA++     I       +  L     ST   AP +S  +P   
Sbjct: 61  TSPIAILCNFVKP-VPKVANLNLRYKIQVLDFQNLQNLIARNLSTRRHAPHLSPANPQVL 120

Query: 348 IAALSNNLYK 356
           I+A ++ L +
Sbjct: 121 ISAAASRLLR 129

[Close]
BLAST of CaUC06G117730 vs. ExPASy TrEMBL
Match: A0A199VXL9 (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_20683 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.7e-18
Identity = 57/104 (54.81%), Postives = 69/104 (66.35%), Query Frame = 0 

Query: 187 PSFPVTLFTTETKKLLMKNPSDKVERKRPVLIVFIPLGDLVMKKSSCPVYMKASPEPTKK 246
           P  PVTL T +T   L KNPS+ V R  PVL+VFIP G    KKSSCP+Y+KASP PT+K
Sbjct: 58  PPLPVTLCTIDTSTELTKNPSESVLRNNPVLMVFIPFGHSRKKKSSCPMYVKASPAPTRK 117

Query: 247 NCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSIDRTRP 291
           NCGI++NTL  R+  S     AT    +S  AAAAI  ++RTRP
Sbjct: 118 NCGISQNTL-SRIVESFGLDRATFRRLISVRAAAAIARMERTRP 160

[Close]
BLAST of CaUC06G117730 vs. ExPASy TrEMBL
Match: A0A444G0P2 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00007083 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-17
Identity = 52/82 (63.41%), Postives = 59/82 (71.95%), Query Frame = 0 

Query: 219 VFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASA 278
           VFIP GD VMKKSSCPVYM ASP PT +NCGIN  TL+G V V    + AT + F SASA
Sbjct: 87  VFIPFGDRVMKKSSCPVYMNASPAPTNRNCGINVKTLMGSVVVPLGASRATESRFTSASA 146

Query: 279 AAAIPSIDRTRPMAILCMFVKP 301
           AA IP I++ RP+ ILC  VKP
Sbjct: 147 AATIPMIEKLRPIPILCRLVKP 168

[Close]
BLAST of CaUC06G117730 vs. ExPASy TrEMBL
Match: A0A6A2ZBJ4 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110956pilonHSYRG00228 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.8e-14
Identity = 70/159 (44.03%), Postives = 81/159 (50.94%), Query Frame = 0 

Query: 228 MKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSIDR 287
           MKKSS PVYMKASP PT+KNCGI KNTLIG V V      AT N F+SASAAAAIP+ DR
Sbjct: 1   MKKSSWPVYMKASPAPTRKNCGIRKNTLIGSVVVVVSLVLATDNRFISASAAAAIPNDDR 60

Query: 288 TRPMAILCM-------------FVKPKMMVVAHIGSSLAIIFT-------SSTLVTELSF 347
           TRPMAIL               F +  MM  ++    + I  T             + S 
Sbjct: 61  TRPMAILWKNFRCHMLTWFPFHFFQTGMMRRSYTARVINIATTKRRPKYDGCDPYWQKSH 120

Query: 348 HGF-------------STETAPCVSKSPSATIAALSNNL 354
           H                 ET   +SKSPSAT+A+LS  L
Sbjct: 121 HHLDLFHPCHRAKFPCGAETTTFLSKSPSATMASLSKKL 159

The following BLAST results are available for this feature:
BLAST of CaUC06G117730 vs. NCBI nr
Match NameE-valueIdentityDescription
CAA7408874.18.4e-1940.74unnamed protein product [Spirodela intermedia][more]
OAY81728.11.6e-1754.81hypothetical protein ACMD2_20683 [Ananas comosus][more]
RWW28438.16.1e-1763.41hypothetical protein GW17_00007083 [Ensete ventricosum][more]
KAE8688789.11.4e-1344.03hypothetical protein F3Y22_tig00110956pilonHSYRG00228 [Hibiscus syriacus][more]
CAA2632558.16.9e-1340.94unnamed protein product [Spirodela intermedia][more]
BLAST of CaUC06G117730 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G117730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7I8LI444.1e-1940.74Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_15019552 PE=4 SV... [more]
A0A2N9IA493.5e-1852.31Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48811 PE=4 SV=1[more]
A0A199VXL97.7e-1854.81Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_20683 PE=4 SV=1[more]
A0A444G0P22.9e-1763.41Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00007083 PE=4 SV=1[more]
A0A6A2ZBJ46.8e-1444.03Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110956pilon... [more]
BLAST of CaUC06G117730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 514..543

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G117730.1CaUC06G117730.1mRNA