Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTTTCAAGAAGTAACAAAAAGGAAGGTTGAAGATTGCGGCTAATGGGCTCGCAGTCGTCGCAACAAAGTCGAGTCGACATATTTTCAAAGAGAAAAAGAAGCGGAAAACAGTCGACGCTGCTCTTACTGCGAGTCGCCGACGCCCAAGGCGGAGCGTTTGTGTTGGAGGGAACATGGAGAGGGCTGAGGAAGGAACGTCGTCCACACCATACGCCGGAGGAGGAGTCGGAGGAAAAGTTAGGAAGCCAACCTCAAGAAAGCCGCCGCCGACCCCTTACGCTCGCCCCGTGCATGACCAATCGCAGAGGCGCTGGCTTTCAAAGCTCGTTGATCCGGCCTACCGGCTCATCACCGGCGGTGCCACCCGACTGCTTCCCTATCTGTTCTCGAAACCACTGCCCTCCAACGCCCTTCCGTCTCCCGGAAACGTAGATCAAGGTCATTTGCGTCCTCCCCCAATCTTCTCGTTAAATTTTATATCTACTGCCAATTACTTAGGGTTTTGGACATCGCATTATCTCGGTTGAAATCATTGTCCTTCTTATACTCTATTTTAGTTCTAGGCATTTGGGGGAAATTGATGGCCTTTCCGACGGTAGTTACTAGTGAGTAGTGAATAGTGAGGTTTCCAATTTTTTCCATTAGTAAACATCTTGTTGCATTTACAAAGCAACTTTTCTAATTCACATAAGTGAAAGTAGTGTAGCCATGTTTTGCCATGCTCTTGCATTTATCTATAGAAATTGTTCACATCAGACTCCAGAGAATGTTACTACTTGTTCTGTTTATACTACAACTCTACCATGAGCGGTCTTTGTCATAGAATTGGTGGGAAAAAGCGAAGGAGCTTAGATTTGCCTGCCTTCGAGTGTTGTTTTGTTCATTCTCTAGTAAGATCAGTTGTTGATGATGAATTCTTTTTGAGCAGATAAAGTGGAGGCAGAGGTGGAGGATAACGTCTCTGGAGAAGAACCCCACAATGTAAATGTAGCTCTAATGCTCTATTTTATATGTTTGTTTGTTTGTTTTTTTTTTTTTTGGGTTAAAGTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTCCTGTTCCATGGCCATGAGTACCTTCTTATTTTATGCCATCTTACCAATGAGTATCTGGGTATGTCTTTGATAACAGACAAATGAACAATCGATACTCAAAAGTGCTAACTGGGGTTTTATCATTAAGTGATATAGAAGTCTATGGAAATAAAGTCATAGGCTAGGATTACCTAATCTTAACAGCCACTTTTCACTGGTGACCTTACTTTGATTGGTGTGTACTGTGTACTGTAGAAGGTTATAAATGTTTTGACCTTGCTAGTGCGCTCATGCTTGTCTGCCAGTTGAAGTTATTGATCTTCCGTTAAATTATGACATTCAGTCTGATGTTCACATTTGTCATCTGCAAGAAATCTGATAGTTTACTAGTTAAAATTTTGTTTACCTGATGTAGTTGTTTTTTCTCTTGTTTCCCATTCCTGTATAGCAATATTCTTATATTGATCCTGATGGCTTGGAGTTACAAAATCACATTGCTTATCCATTCTTTTTGGTTAACACCCACGGGAATGATTTCCTATGTCCTGTTTTTGTTTTCATCTAATTCAATTTTGCACTTTTACTTTTCATTTGAAAAATTATATGCATGCAGTAATGTGATTCATTAACATACATTTTCGTTCGTTTCTGGCAGCAACGGGTCCCTACCTTATTTGGATTACCTGGTCCTAGTGGAGAGGCAAATATATCAGAGAACAATTTTGATTTTAATGGCCGCGAAAAGGACAGAGAAAATGATGTATTAGCTGGGAATAGAAAATTTGATGTTGAAAAATGGATCCAAGAAAAAACATTTTCGCGGTAAATTTCAGAGTTTGACTTTTTTTTTCTGTTTTATCAGATGAAGTGATCTGTCATTTATTGTCTCAGAAACATGAACATGGCCACAATCCATGATATTGATATAGATACGATGACTCATTATCTAAGATATTTAGACAGAGACATGACAAGAACTGGTTTTGTAAGACATCTATTTTCTAATTATACTTGAACATTTGAACCTTTTTCAATAATTCAGTCAAAAAGTTTATTTCAATCTTAAAATATTGGTGTTTGGAAGTCAATTTGAAAGTGACGTAATATACAATATCTTAAAGAAGTTGAAGAAGCCAATTATGTTTACCTAACTGTGCAATTCCTTATGGTACAATTATGTTTTTCAATCATATGCTTAAATAAAAGGTTCAATATTTTTCTTTCTTAAAATTTATTTATTTTTCTCCCATCTTTTTTATGTCGATTATTTTATTTTATATATTTTTTAAAAAACGGTAAGTGCTCAACAATCCCAACACTTGCTCGACTTGTATTCGAGTGTCCACATCATGTATGACACAAACATGTTCCCTAAACTACATATTGAAGCTTCAACTTTTTTTCATCACAGACTTCAGTTGAAGTGTTTCCTCACTAAAATGCAACAGGATGGAACGTTATTGTGAAGCAACTTATTTTAATCATGATTCCATGGTGGAAGTACTTTACCCTGCTATGAATAAATAGGTTATTTTCTTCTGAGGTTGCATCCTAGGGATGGTCAAATGTCCATAGGTAGTAGTCTATAGTCTTGATAATTTCATCTCTAATCATATTTCTATTGTCTAAACTGGTAGTGGTGCCATACGGCCCATACCTCTATGTCCAAGGGATGGTCAAATGTCAAATATTAGTGTTCTACCACCAACTGGTAGTGGCACAATGCCTCTATGTTTCTTTTGAACCTCTTTTACATTTTATACAGCCACATAGTCCGTTCGAGTACTGGATTTCTCTAAATTGGCTGATGATATACTCTGCAGGGATGAAGTGAGTCGTTTATTAGAGATACTACAATCAAGGGCTCTTGAACCTTCTAACACACTGGTAGGCAATACATTTTCACCACAGACCATTGAAAAACAAGTTGAGCAGCCATCTGTTGCAAATAGAGTTCTAAAAATGTCTCGTGAAGGAAAGCAAGAAGATTTGGAGAGAGCTACATTGGGAAACTTAACTCCTCATCCACATTCATCGGTCAGTAGGGTGAATCCTTGAGTAGGTTCTGTAGAATATAAGTAAAAGTAAATATTTCATGGCTGGCTGTTATGAACTTGGAACTTCTTTTACATCTGTTGGTCTAATGTCTGTCAATTTGCCAAATTGCTTTGTTGTTTCACACATTGGTGCTGATTGTAGGATTATCTCCCATTTTCTTGATATCTTATGTTCCTTTGATAGGTTTTATTAGGCCATGCTAGTATGTAGTGATTAGGTGCAATGCTGTTCCAGAGACAGGGTTCTTTTTTTTATTATTACTATTTTTTTGTATTAATTAATAGTTTAATATATAAAACACCAAGGAGATTGGTTCAGTCTTGGGATGGTCAAAAACTAAATCAAACTGAATGCCTTACCCTCACTACTTGATTACTAGGTTGTCATACTTCATATTTATATTTTTACTAAGTTATTGTTTTAATACTCTTCTTATTTCTTAGTAATTAAGTTAGGTAGAAGATACTCTGATGATCAAATTGTAAAACCAGTGCTGATGAGACATTCATTAATCAAAATAATAAAATGAATCATCTCTCTGTTAGGAACATGGTAAATTTGGTTGATGTTTGAAAGTCAATGGGAAAATAAGAAGTTAAAGGTCTAGGATGGGGATTTGTAGAAGAATCTACAAATTTTCATTGCCAAAGTCTTCAATATTTGTTCACTGTTTAGAGCTTGTTATTCACGTTTTTCCCGCCTTTAAGAATAATTCATCATTGGGTGTACTTTAGCAGAAACTAAGTGACATTGGAGCATCACCTGTGGATATTGCAAGAGCATACATGAGCAACCGAAAATCTGAACCAGGCTTACTTTCTGAAAAGATACCAGATGATGAAAGGGCTTCACTTCATGGTGATCATCAAATGTCTAAGCCTTTTATTCCATCGATGTCCCCCAATCCATCAACTTGTTGGCCTGGTGCCATGTCAGAAAGTCAGCGTGGTTATTTAACTCCAAGGAGTCAAAGAGGAGGTAGATTTGGTCTTCATACTTTCCCTCGGACTCCATATTCTAGGAATATCTTTTCAAAGTCCAAGTCCAAGGTATGTAGACATGTCTTCAATTCCATTTTTTTTCTTTTCTTTTGGGTCGTGAGAGTGTATGTACAGTACGCAGACTGTATAGGATTAACCACTCCTTTACATGTGAACAGCTAACTCAGTTGCAAGGAGACACCCAAAAGTTTGTGAATACACCATCACCGCTCTGGCAGCAGTCACGAACTCCAGCATATTCTCTGGTAATTTCTTTTATCATTAGCCATTGCCAACAGACCAAACACACAATTGTAGTTTCTTTTATCATTAAGCCCTCAGTGGCTAAAAACCAATAAAAAGACCATAGGAACTCTTGTTGAGAAGTTCTTTTGTAGCATTTGAAATGAGCTTGATTACTGAATATTTTAATTTATGTCCCTAATGAGTGGGCATTTTAAGGTAAAGGTAGTATAAAAACCGATCATTTTAGCAAGAAGAATAAATCTGAAATATTATAGGGAACTGCAGTATCCTTTTTTGTGCATGTATGCATTACAGGGTAGAGCTGGAATTTTTTGTTGAGGATGGAAAAATTTTACATTCAAACTCCTAAAATACATTATTTTAATTCTTAGAGGAAAAATTATAATTTAAAATTTCATCTTTTCTTTAATGTTTGCATGGTGCCCATATTGAGCATGTGATTTATATGTTATTCTTGACCCGTCAACCTTTTCTTTGTCCAAAATGTTCAATTATCCTTGATCATTTGTTTCTTTCATGCTCTTGCTGGTAGGATGTGTCTTGAGCTAGTGGTTTATCCATTACCTCTGTGCCTTTGTTAAAATGCTTGCTATGGTTGTTGCTGTTGTGCTGCTGTTTTATCAAGCCTAAGTATAGTTGTTTTGGCATAACCCTGATATAAACTAGTTAGATTTTTCATCCAAAAACTAGAATTTGATGGATTAGCTACTCGTGTTTCCTAATCCATGGTGCCTATAGGTGGTTGTTTAATTTTTGATTTTAGGACAACTCATTCTCAGGAGGAGTTTTTTTAGTTCTGGGGCATATTCTTGTGTTTAAATATCTAACTGTACATAAGTTCTTAATGAAACTTTCGATACTGAATATTGCATTGTTGCTTCTTATGCATACTTTGCTACTGGTACTTATTAGCTGTTTGCATTTATAATGTGCTGACCTCAAGTTCCTGGGGGTTCTTACTTCTATCATTCCTTTTTTTGTATTTGTTTTTTGTTTTTTATTTTTCTGTTTGTTGATATAGATGCCATCAAGCAATGATCCATTAGACGAGGCAACTGGTTCCGTTGGACCAATTCGTAGGCTTCGGCATAAGGCATCTGCAGTTACTAATTCCAGACGATCTGCTTACTTTTATCCAAATCGACAACCAGAGATGACGGTAGAAAACTCCAATACTTCGGAAGGCATTTTACCTGATATGAAGAAGAATCTGGAATTTGAAGGAGCAAGCACCATTCCTCTATCACAATCAGCAGTAAACAACAGCTCTGAGTCAAGTCCTCTGACGGTCCGTCCACAGTCCAGTCAGGTTGCTAGGACAATCCTAGAGCATATTACTAGAAACCCACCTACTCCTAAAGAAAAGACGGAAGAGTTAAAGAGAGCAATTCAATGGAAGAAAACCTCATCTTCTAATGTACAAACGGTCAAGCCAAACGAAACCAGTAATTTGGCCGTAGAGTTAGATTCTCACCAAAAATCAAACCAAGTAGATCAGAACTGTAACCCCCAATCGAGCGATAAGGGAAAAACCATGTCCATGATTCTTCCAAGGGAGAGTTCTGGCAGAAATTCTGATGCTGCAATCCAAAATCCTTTCGGTCCAAAGTTTAGACTTAGCAATGCTGAACCAAAACACAAGGATGATGCAGGCTTAAATGTTGGTAGCTCATTGCCTAAGGTATCACTGCAACTTTGCAGTTGGTTTTAATTCGTTGATGCATTATTGACCGACTTACAGATGCTTATTGTGTATGTATTTGAAGTTACTAGCATAAGCTTGAAGAGTTTTTAATTTGTGGTTGAATTTTTGGGCAGGTTGTTCCAAAGACCGTTCCCGTTCCAGCTCTTGGATCCAAAATGGGGGCCCTTGGAGGCAAACCTGTTTTTCCATCCATTACCATCAACAAGCCTGAGTCAAAATGGACATTTTCTTCCGATAGTGGTTCGGCGTTTACTTTCCCTGTTTCCGGAGCATCCTCAGGAATGCTATCAGAACCACCAACACCATCCATCTTCCCATCAACCAGCCTTGGGGGTAGTCAGCCTCTATTACTGAAGCCCGAGACTCCAATTCCTTCATACAGCTTTGGCTCAAAGAAGTCCAGCCCTACCCTTATTTTCTCATTCCCTTCAACAAACAGCGATACAATCCGCACTGAAGCCTCAAATATTAAGTTCAGCTTCGGATCCAAGGATCATACAAGACTTTCCTTCAGTTCTGTTGGGAAAGATGCAGTTTGTTGCTAACTGATTAGACTTGTTAAGAAACTTGTGGCATGGCAAATACCTTATTATTATTTTTTTTTATATAAGAAAACAACAAAATATGAAGTGCAAATTCAATCAAGATAAAAAAAAATAGCTTGTGTGCCAGTTGATGGCGTTCGTTTATTTA
mRNA sequence
CGTTTCAAGAAGTAACAAAAAGGAAGGTTGAAGATTGCGGCTAATGGGCTCGCAGTCGTCGCAACAAAGTCGAGTCGACATATTTTCAAAGAGAAAAAGAAGCGGAAAACAGTCGACGCTGCTCTTACTGCGAGTCGCCGACGCCCAAGGCGGAGCGTTTGTGTTGGAGGGAACATGGAGAGGGCTGAGGAAGGAACGTCGTCCACACCATACGCCGGAGGAGGAGTCGGAGGAAAAGTTAGGAAGCCAACCTCAAGAAAGCCGCCGCCGACCCCTTACGCTCGCCCCGTGCATGACCAATCGCAGAGGCGCTGGCTTTCAAAGCTCGTTGATCCGGCCTACCGGCTCATCACCGGCGGTGCCACCCGACTGCTTCCCTATCTGTTCTCGAAACCACTGCCCTCCAACGCCCTTCCGTCTCCCGGAAACGTAGATCAAGATAAAGTGGAGGCAGAGGTGGAGGATAACGTCTCTGGAGAAGAACCCCACAATCAACGGGTCCCTACCTTATTTGGATTACCTGGTCCTAGTGGAGAGGCAAATATATCAGAGAACAATTTTGATTTTAATGGCCGCGAAAAGGACAGAGAAAATGATGTATTAGCTGGGAATAGAAAATTTGATGTTGAAAAATGGATCCAAGAAAAAACATTTTCGCGAAACATGAACATGGCCACAATCCATGATATTGATATAGATACGATGACTCATTATCTAAGATATTTAGACAGAGACATGACAAGAACTGTCAAAAAGTTTATTTCAATCTTAAAATATTGGTGTTTGGAAGTCAATTTGAAAGTGACTGCTCAACAATCCCAACACTTGCTCGACTTGTATTCGAGTGTCCACATCATGTATGACACAAACATGTTCCCTAAACTACATATTGAAGCTTCAACTTTTTTTCATCACAGACTTCAGTTGAAGTGTTTCCTCACTAAAATGCAACAGGATGGAACGTTGCATCCTAGGGATGGTCAAATGTCCATAGTGGTGCCATACGGCCCATACCTCTATGTCCAAGGGATGGTCAAATGTCAAATATTAGTGTTCTACCACCAACTGGTAGTGGCACAATGCCTCTATTCCGTTCGAGTACTGGATTTCTCTAAATTGGCTGATGATATACTCTGCAGGGATGAAGTGAGTCGTTTATTAGAGATACTACAATCAAGGGCTCTTGAACCTTCTAACACACTGGTAGGCAATACATTTTCACCACAGACCATTGAAAAACAAGTTGAGCAGCCATCTGTTGCAAATAGAGTTCTAAAAATGTCTCGTGAAGGAAAGCAAGAAGATTTGGAGAGAGCTACATTGGGAAACTTAACTCCTCATCCACATTCATCGGTCAGTAGGAAACTAAGTGACATTGGAGCATCACCTGTGGATATTGCAAGAGCATACATGAGCAACCGAAAATCTGAACCAGGCTTACTTTCTGAAAAGATACCAGATGATGAAAGGGCTTCACTTCATGGTGATCATCAAATGTCTAAGCCTTTTATTCCATCGATGTCCCCCAATCCATCAACTTGTTGGCCTGGTGCCATGTCAGAAAGTCAGCGTGGTTATTTAACTCCAAGGAGTCAAAGAGGAGGTAGATTTGGTCTTCATACTTTCCCTCGGACTCCATATTCTAGGAATATCTTTTCAAAGTCCAAGTCCAAGAGTGTATGTACAGTACGCAGACTGTATAGGATTAACCACTCCTTTACATGTGAACAGCTAACTCAGTTGCAAGGAGACACCCAAAAGTTTGTGAATACACCATCACCGCTCTGGCAGCAGTCACGAACTCCAGCATATTCTCTGATGCCATCAAGCAATGATCCATTAGACGAGGCAACTGGTTCCGTTGGACCAATTCGTAGGCTTCGGCATAAGGCATCTGCAGTTACTAATTCCAGACGATCTGCTTACTTTTATCCAAATCGACAACCAGAGATGACGGTAGAAAACTCCAATACTTCGGAAGGCATTTTACCTGATATGAAGAAGAATCTGGAATTTGAAGGAGCAAGCACCATTCCTCTATCACAATCAGCAGTAAACAACAGCTCTGAGTCAAGTCCTCTGACGGTCCGTCCACAGTCCAGTCAGGTTGCTAGGACAATCCTAGAGCATATTACTAGAAACCCACCTACTCCTAAAGAAAAGACGGAAGAGTTAAAGAGAGCAATTCAATGGAAGAAAACCTCATCTTCTAATGTACAAACGGTCAAGCCAAACGAAACCAGTAATTTGGCCGTAGAGTTAGATTCTCACCAAAAATCAAACCAAGTAGATCAGAACTGTAACCCCCAATCGAGCGATAAGGGAAAAACCATGTCCATGATTCTTCCAAGGGAGAGTTCTGGCAGAAATTCTGATGCTGCAATCCAAAATCCTTTCGGTCCAAAGTTTAGACTTAGCAATGCTGAACCAAAACACAAGGATGATGCAGGCTTAAATGTTGGTAGCTCATTGCCTAAGGTTGTTCCAAAGACCGTTCCCGTTCCAGCTCTTGGATCCAAAATGGGGGCCCTTGGAGGCAAACCTGTTTTTCCATCCATTACCATCAACAAGCCTGAGTCAAAATGGACATTTTCTTCCGATAGTGGTTCGGCGTTTACTTTCCCTGTTTCCGGAGCATCCTCAGGAATGCTATCAGAACCACCAACACCATCCATCTTCCCATCAACCAGCCTTGGGGGTAGTCAGCCTCTATTACTGAAGCCCGAGACTCCAATTCCTTCATACAGCTTTGGCTCAAAGAAGTCCAGCCCTACCCTTATTTTCTCATTCCCTTCAACAAACAGCGATACAATCCGCACTGAAGCCTCAAATATTAAGTTCAGCTTCGGATCCAAGGATCATACAAGACTTTCCTTCAGTTCTGTTGGGAAAGATGCAGTTTGTTGCTAACTGATTAGACTTGTTAAGAAACTTGTGGCATGGCAAATACCTTATTATTATTTTTTTTTATATAAGAAAACAACAAAATATGAAGTGCAAATTCAATCAAGATAAAAAAAAATAGCTTGTGTGCCAGTTGATGGCGTTCGTTTATTTA
Coding sequence (CDS)
ATGGAGAGGGCTGAGGAAGGAACGTCGTCCACACCATACGCCGGAGGAGGAGTCGGAGGAAAAGTTAGGAAGCCAACCTCAAGAAAGCCGCCGCCGACCCCTTACGCTCGCCCCGTGCATGACCAATCGCAGAGGCGCTGGCTTTCAAAGCTCGTTGATCCGGCCTACCGGCTCATCACCGGCGGTGCCACCCGACTGCTTCCCTATCTGTTCTCGAAACCACTGCCCTCCAACGCCCTTCCGTCTCCCGGAAACGTAGATCAAGATAAAGTGGAGGCAGAGGTGGAGGATAACGTCTCTGGAGAAGAACCCCACAATCAACGGGTCCCTACCTTATTTGGATTACCTGGTCCTAGTGGAGAGGCAAATATATCAGAGAACAATTTTGATTTTAATGGCCGCGAAAAGGACAGAGAAAATGATGTATTAGCTGGGAATAGAAAATTTGATGTTGAAAAATGGATCCAAGAAAAAACATTTTCGCGAAACATGAACATGGCCACAATCCATGATATTGATATAGATACGATGACTCATTATCTAAGATATTTAGACAGAGACATGACAAGAACTGTCAAAAAGTTTATTTCAATCTTAAAATATTGGTGTTTGGAAGTCAATTTGAAAGTGACTGCTCAACAATCCCAACACTTGCTCGACTTGTATTCGAGTGTCCACATCATGTATGACACAAACATGTTCCCTAAACTACATATTGAAGCTTCAACTTTTTTTCATCACAGACTTCAGTTGAAGTGTTTCCTCACTAAAATGCAACAGGATGGAACGTTGCATCCTAGGGATGGTCAAATGTCCATAGTGGTGCCATACGGCCCATACCTCTATGTCCAAGGGATGGTCAAATGTCAAATATTAGTGTTCTACCACCAACTGGTAGTGGCACAATGCCTCTATTCCGTTCGAGTACTGGATTTCTCTAAATTGGCTGATGATATACTCTGCAGGGATGAAGTGAGTCGTTTATTAGAGATACTACAATCAAGGGCTCTTGAACCTTCTAACACACTGGTAGGCAATACATTTTCACCACAGACCATTGAAAAACAAGTTGAGCAGCCATCTGTTGCAAATAGAGTTCTAAAAATGTCTCGTGAAGGAAAGCAAGAAGATTTGGAGAGAGCTACATTGGGAAACTTAACTCCTCATCCACATTCATCGGTCAGTAGGAAACTAAGTGACATTGGAGCATCACCTGTGGATATTGCAAGAGCATACATGAGCAACCGAAAATCTGAACCAGGCTTACTTTCTGAAAAGATACCAGATGATGAAAGGGCTTCACTTCATGGTGATCATCAAATGTCTAAGCCTTTTATTCCATCGATGTCCCCCAATCCATCAACTTGTTGGCCTGGTGCCATGTCAGAAAGTCAGCGTGGTTATTTAACTCCAAGGAGTCAAAGAGGAGGTAGATTTGGTCTTCATACTTTCCCTCGGACTCCATATTCTAGGAATATCTTTTCAAAGTCCAAGTCCAAGAGTGTATGTACAGTACGCAGACTGTATAGGATTAACCACTCCTTTACATGTGAACAGCTAACTCAGTTGCAAGGAGACACCCAAAAGTTTGTGAATACACCATCACCGCTCTGGCAGCAGTCACGAACTCCAGCATATTCTCTGATGCCATCAAGCAATGATCCATTAGACGAGGCAACTGGTTCCGTTGGACCAATTCGTAGGCTTCGGCATAAGGCATCTGCAGTTACTAATTCCAGACGATCTGCTTACTTTTATCCAAATCGACAACCAGAGATGACGGTAGAAAACTCCAATACTTCGGAAGGCATTTTACCTGATATGAAGAAGAATCTGGAATTTGAAGGAGCAAGCACCATTCCTCTATCACAATCAGCAGTAAACAACAGCTCTGAGTCAAGTCCTCTGACGGTCCGTCCACAGTCCAGTCAGGTTGCTAGGACAATCCTAGAGCATATTACTAGAAACCCACCTACTCCTAAAGAAAAGACGGAAGAGTTAAAGAGAGCAATTCAATGGAAGAAAACCTCATCTTCTAATGTACAAACGGTCAAGCCAAACGAAACCAGTAATTTGGCCGTAGAGTTAGATTCTCACCAAAAATCAAACCAAGTAGATCAGAACTGTAACCCCCAATCGAGCGATAAGGGAAAAACCATGTCCATGATTCTTCCAAGGGAGAGTTCTGGCAGAAATTCTGATGCTGCAATCCAAAATCCTTTCGGTCCAAAGTTTAGACTTAGCAATGCTGAACCAAAACACAAGGATGATGCAGGCTTAAATGTTGGTAGCTCATTGCCTAAGGTTGTTCCAAAGACCGTTCCCGTTCCAGCTCTTGGATCCAAAATGGGGGCCCTTGGAGGCAAACCTGTTTTTCCATCCATTACCATCAACAAGCCTGAGTCAAAATGGACATTTTCTTCCGATAGTGGTTCGGCGTTTACTTTCCCTGTTTCCGGAGCATCCTCAGGAATGCTATCAGAACCACCAACACCATCCATCTTCCCATCAACCAGCCTTGGGGGTAGTCAGCCTCTATTACTGAAGCCCGAGACTCCAATTCCTTCATACAGCTTTGGCTCAAAGAAGTCCAGCCCTACCCTTATTTTCTCATTCCCTTCAACAAACAGCGATACAATCCGCACTGAAGCCTCAAATATTAAGTTCAGCTTCGGATCCAAGGATCATACAAGACTTTCCTTCAGTTCTGTTGGGAAAGATGCAGTTTGTTGCTAA
Protein sequence
MERAEEGTSSTPYAGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRLITGGATRLLPYLFSKPLPSNALPSPGNVDQDKVEAEVEDNVSGEEPHNQRVPTLFGLPGPSGEANISENNFDFNGREKDRENDVLAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDTMTHYLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPKLHIEASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSIVVPYGPYLYVQGMVKCQILVFYHQLVVAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQVEQPSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNRKSEPGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRGGRFGLHTFPRTPYSRNIFSKSKSKSVCTVRRLYRINHSFTCEQLTQLQGDTQKFVNTPSPLWQQSRTPAYSLMPSSNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMTVENSNTSEGILPDMKKNLEFEGASTIPLSQSAVNNSSESSPLTVRPQSSQVARTILEHITRNPPTPKEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSDKGKTMSMILPRESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPVPALGSKMGALGGKPVFPSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEPPTPSIFPSTSLGGSQPLLLKPETPIPSYSFGSKKSSPTLIFSFPSTNSDTIRTEASNIKFSFGSKDHTRLSFSSVGKDAVCC
Homology
BLAST of CaUC06G117530 vs. NCBI nr
Match:
XP_038879645.1 (nuclear pore complex protein NUP1 isoform X2 [Benincasa hispida])
HSP 1 Score: 1139.4 bits (2946), Expect = 0.0e+00
Identity = 630/919 (68.55%), Postives = 662/919 (72.03%), Query Frame = 0
Query: 1 MERAEEGTSSTPYAGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRLIT 60
M+ AEEGTSS PY GGGVGGKVRKPT+RKPPPTPYARP+H+QSQRRWLSKLVDPAYRLIT
Sbjct: 1 MDSAEEGTSSAPYGGGGVGGKVRKPTTRKPPPTPYARPLHNQSQRRWLSKLVDPAYRLIT 60
Query: 61 GGATRLLPYLFSKPLPSNALPSPGNVDQDKVEAEVEDNVSG-EEPHNQRVPTLFGLPGPS 120
GATRLLPYLF KPLPSNALPSPG+VDQDKVEAEVEDNVSG EEPHN V TL G PGPS
Sbjct: 61 DGATRLLPYLFLKPLPSNALPSPGDVDQDKVEAEVEDNVSGEEEPHNPEVSTLVGSPGPS 120
Query: 121 GEANISENNFDFNGREKDRENDVLAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDTMTH 180
GEAN SENN DFNG +KDR ND LAGNR FDVEKWIQEKTFS
Sbjct: 121 GEANRSENNSDFNGCQKDRVNDTLAGNRTFDVEKWIQEKTFS------------------ 180
Query: 181 YLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPKLHI 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 EASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSIVVPYGPYLYVQGMVKCQILVFYHQLV 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 VAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQVEQ 360
RDEVS LLEILQSRALEPS+ + NTF P++IEKQVEQ
Sbjct: 301 ----------------------RDEVSNLLEILQSRALEPSSKVEDNTFPPRSIEKQVEQ 360
Query: 361 PSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNRKSE 420
PS ANRVLKM EGKQEDLERA GNLTPHPHSS KLSD+GASPVDIARAYMSNRK E
Sbjct: 361 PSAANRVLKMPCEGKQEDLERAMWGNLTPHPHSS---KLSDVGASPVDIARAYMSNRKYE 420
Query: 421 PGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRGGRF 480
PGLLS+KIPDDER LHGDHQ+SKP IPSMSPNPSTCWPGAMSESQRGYLTPR QRGGRF
Sbjct: 421 PGLLSDKIPDDERGLLHGDHQISKPCIPSMSPNPSTCWPGAMSESQRGYLTPRGQRGGRF 480
Query: 481 GLHTFPRTPYSRNIFSKSKSKSVCTVRRLYRINHSFTCEQLTQLQGDTQKFVNTPSPLWQ 540
GLH+FPRTPYSR+IFSKSKSK LT LQGD QKFVNTPSPLWQ
Sbjct: 481 GLHSFPRTPYSRSIFSKSKSK-------------------LTHLQGDAQKFVNTPSPLWQ 540
Query: 541 QSRTPAYSLMPSSNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMTVENSN 600
QSRTPA+SLM S+NDPLDE GS GPI RLRH ASAVTNSRRSAYFYPNRQPEM VENSN
Sbjct: 541 QSRTPAHSLMTSNNDPLDETIGSTGPIHRLRHTASAVTNSRRSAYFYPNRQPEMKVENSN 600
Query: 601 TSEGILPDMKKNLEFEGASTIPLSQSAVNNSSESSPLTVRPQSSQVARTILEHITRNPPT 660
TSEGILPDMKKNLE GAS IPLS+S VNNSSESSPLTVRPQSSQVARTILEHITRNPPT
Sbjct: 601 TSEGILPDMKKNLELGGASIIPLSKSVVNNSSESSPLTVRPQSSQVARTILEHITRNPPT 660
Query: 661 PKEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSDKGKT 720
PKEKTEELKRAI+WKKT SSNVQTVK NE SNL EL SHQKSN+VDQNC+PQ +DKG+T
Sbjct: 661 PKEKTEELKRAIEWKKTPSSNVQTVKSNEASNLTAELYSHQKSNKVDQNCHPQLTDKGET 720
Query: 721 MSMILPRESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPVPAL 780
MS ILP+ES+GRN D AIQNP G KFRLSNAE K+KDDAGLN+GSS PKV PKTVPVPAL
Sbjct: 721 MSTILPKESAGRNYDGAIQNPSGLKFRLSNAESKYKDDAGLNIGSSSPKVAPKTVPVPAL 737
Query: 781 GSKMG-------ALGGKPVFPSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEPPTP 840
GS++G +LGGKPVFPSITINKPESKW FSSDSGSAFTFPVSGASSGMLSEPPTP
Sbjct: 781 GSEVGTQIKPSPSLGGKPVFPSITINKPESKWAFSSDSGSAFTFPVSGASSGMLSEPPTP 737
Query: 841 SIFPSTSLGGSQPLLLKPETPIPSYSFGSKKSSPTLIFSFPSTNSDTIRTEASNIKFSFG 900
SIFPSTSLGGSQPLLLKPETP+PSYSFGSKKSS TL+FSFPSTNSDTI E SNIKFSFG
Sbjct: 841 SIFPSTSLGGSQPLLLKPETPVPSYSFGSKKSSRTLVFSFPSTNSDTISNETSNIKFSFG 737
Query: 901 SKDHTRLSFSSVGKDAVCC 912
S DHTRL F SVGKDAVCC
Sbjct: 901 SNDHTRLHFGSVGKDAVCC 737
BLAST of CaUC06G117530 vs. NCBI nr
Match:
XP_038879644.1 (nuclear pore complex protein NUP1 isoform X1 [Benincasa hispida])
HSP 1 Score: 1119.8 bits (2895), Expect = 0.0e+00
Identity = 630/959 (65.69%), Postives = 662/959 (69.03%), Query Frame = 0
Query: 1 MERAEEGTSSTPYAGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRLIT 60
M+ AEEGTSS PY GGGVGGKVRKPT+RKPPPTPYARP+H+QSQRRWLSKLVDPAYRLIT
Sbjct: 1 MDSAEEGTSSAPYGGGGVGGKVRKPTTRKPPPTPYARPLHNQSQRRWLSKLVDPAYRLIT 60
Query: 61 GGATRLLPYLFSKPLPSNALPSPGNVDQDKVEAEVEDNVSG-EEPHNQRVPTLFGLPGPS 120
GATRLLPYLF KPLPSNALPSPG+VDQDKVEAEVEDNVSG EEPHN V TL G PGPS
Sbjct: 61 DGATRLLPYLFLKPLPSNALPSPGDVDQDKVEAEVEDNVSGEEEPHNPEVSTLVGSPGPS 120
Query: 121 GEANISENNFDFNGREKDRENDVLAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDTMTH 180
GEAN SENN DFNG +KDR ND LAGNR FDVEKWIQEKTFS
Sbjct: 121 GEANRSENNSDFNGCQKDRVNDTLAGNRTFDVEKWIQEKTFS------------------ 180
Query: 181 YLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPKLHI 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 EASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSIVVPYGPYLYVQGMVKCQILVFYHQLV 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 VAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQVEQ 360
RDEVS LLEILQSRALEPS+ + NTF P++IEKQVEQ
Sbjct: 301 ----------------------RDEVSNLLEILQSRALEPSSKVEDNTFPPRSIEKQVEQ 360
Query: 361 PSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNRKSE 420
PS ANRVLKM EGKQEDLERA GNLTPHPHSS KLSD+GASPVDIARAYMSNRK E
Sbjct: 361 PSAANRVLKMPCEGKQEDLERAMWGNLTPHPHSS---KLSDVGASPVDIARAYMSNRKYE 420
Query: 421 PGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRGGRF 480
PGLLS+KIPDDER LHGDHQ+SKP IPSMSPNPSTCWPGAMSESQRGYLTPR QRGGRF
Sbjct: 421 PGLLSDKIPDDERGLLHGDHQISKPCIPSMSPNPSTCWPGAMSESQRGYLTPRGQRGGRF 480
Query: 481 GLHTFPRTPYSRNIFSKSKSKSVCTVRRLYRINHSFTCEQLTQLQGDTQKFVNTPSPLWQ 540
GLH+FPRTPYSR+IFSKSKSK LT LQGD QKFVNTPSPLWQ
Sbjct: 481 GLHSFPRTPYSRSIFSKSKSK-------------------LTHLQGDAQKFVNTPSPLWQ 540
Query: 541 QSRTPAYS----------------------------------------LMPSSNDPLDEA 600
QSRTPA+S LM S+NDPLDE
Sbjct: 541 QSRTPAHSLEELKVLGHFVVLEYLILHKFLRQLSRLNIALLILGHYPLLMTSNNDPLDET 600
Query: 601 TGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMTVENSNTSEGILPDMKKNLEFEGAST 660
GS GPI RLRH ASAVTNSRRSAYFYPNRQPEM VENSNTSEGILPDMKKNLE GAS
Sbjct: 601 IGSTGPIHRLRHTASAVTNSRRSAYFYPNRQPEMKVENSNTSEGILPDMKKNLELGGASI 660
Query: 661 IPLSQSAVNNSSESSPLTVRPQSSQVARTILEHITRNPPTPKEKTEELKRAIQWKKTSSS 720
IPLS+S VNNSSESSPLTVRPQSSQVARTILEHITRNPPTPKEKTEELKRAI+WKKT SS
Sbjct: 661 IPLSKSVVNNSSESSPLTVRPQSSQVARTILEHITRNPPTPKEKTEELKRAIEWKKTPSS 720
Query: 721 NVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSDKGKTMSMILPRESSGRNSDAAIQN 780
NVQTVK NE SNL EL SHQKSN+VDQNC+PQ +DKG+TMS ILP+ES+GRN D AIQN
Sbjct: 721 NVQTVKSNEASNLTAELYSHQKSNKVDQNCHPQLTDKGETMSTILPKESAGRNYDGAIQN 777
Query: 781 PFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPVPALGSKMG-------ALGGKPVF 840
P G KFRLSNAE K+KDDAGLN+GSS PKV PKTVPVPALGS++G +LGGKPVF
Sbjct: 781 PSGLKFRLSNAESKYKDDAGLNIGSSSPKVAPKTVPVPALGSEVGTQIKPSPSLGGKPVF 777
Query: 841 PSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEPPTPSIFPSTSLGGSQPLLLKPET 900
PSITINKPESKW FSSDSGSAFTFPVSGASSGMLSEPPTPSIFPSTSLGGSQPLLLKPET
Sbjct: 841 PSITINKPESKWAFSSDSGSAFTFPVSGASSGMLSEPPTPSIFPSTSLGGSQPLLLKPET 777
Query: 901 PIPSYSFGSKKSSPTLIFSFPSTNSDTIRTEASNIKFSFGSKDHTRLSFSSVGKDAVCC 912
P+PSYSFGSKKSS TL+FSFPSTNSDTI E SNIKFSFGS DHTRL F SVGKDAVCC
Sbjct: 901 PVPSYSFGSKKSSRTLVFSFPSTNSDTISNETSNIKFSFGSNDHTRLHFGSVGKDAVCC 777
BLAST of CaUC06G117530 vs. NCBI nr
Match:
XP_008443985.1 (PREDICTED: nuclear pore complex protein NUP1 isoform X3 [Cucumis melo])
HSP 1 Score: 1076.6 bits (2783), Expect = 0.0e+00
Identity = 606/923 (65.66%), Postives = 655/923 (70.96%), Query Frame = 0
Query: 1 MERAEEGTSSTPY--AGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRL 60
ME ++GTSSTPY GGGVGGKVRKPT+RKPPPTPYARP+H+QS RRWLSKLVDPAYRL
Sbjct: 1 METPDQGTSSTPYPGGGGGVGGKVRKPTTRKPPPTPYARPLHNQSDRRWLSKLVDPAYRL 60
Query: 61 ITGGATRLLPYLFSKPLPSNALPSPGNVDQDKVEAEVEDNVSGEE-PHNQRVPTLFGLPG 120
IT GATRLLP+LFSKPLPS ALPSPG+VDQDKVEA++EDNVSGEE P NQ TL GLPG
Sbjct: 61 ITDGATRLLPFLFSKPLPSTALPSPGDVDQDKVEADLEDNVSGEEPPRNQGQSTLVGLPG 120
Query: 121 PSGEANISENNFDFNGREKDRENDVLAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDTM 180
PSGEA S NN DF+G K REND+LAGNRKFDVEKWIQEKTFS
Sbjct: 121 PSGEAIGSGNNSDFSGCLKGRENDILAGNRKFDVEKWIQEKTFS---------------- 180
Query: 181 THYLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPKL 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 HIEASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSIVVPYGPYLYVQGMVKCQILVFYHQ 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 LVVAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQV 360
R+EVSRLLEILQSRALEPSN + G TFSPQ+IEKQV
Sbjct: 301 ------------------------REEVSRLLEILQSRALEPSNKVDGQTFSPQSIEKQV 360
Query: 361 EQPSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNRK 420
EQPS ANRVLK+ EGKQEDLER T GNLTPHPHS S+KL+D+GASPVDIARAYM+NRK
Sbjct: 361 EQPSAANRVLKIPHEGKQEDLERTTWGNLTPHPHS--SQKLTDVGASPVDIARAYMNNRK 420
Query: 421 SEPGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRGG 480
SEPGLLS+KIPD+ R +HGDHQMSKPFIPSMSP+PSTCWPGAMSESQRGYLTPRSQRGG
Sbjct: 421 SEPGLLSDKIPDEGRDLVHGDHQMSKPFIPSMSPSPSTCWPGAMSESQRGYLTPRSQRGG 480
Query: 481 RFGLHTFPRTPYSRNIFSKSKSKSVCTVRRLYRINHSFTCEQLTQLQGDTQKFVNTPSPL 540
RFGLH+FPRTPYSR+IFSK KSK LTQLQGD QKFV TP+PL
Sbjct: 481 RFGLHSFPRTPYSRSIFSKPKSK-------------------LTQLQGDDQKFVTTPTPL 540
Query: 541 WQQSRTPAYSLMPSSNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMTVEN 600
WQQSRTPAYS M SSND LDEA GS GPIR+LRHKASAVTNSRRSAY YP RQP+M V N
Sbjct: 541 WQQSRTPAYSQMISSNDLLDEANGSFGPIRKLRHKASAVTNSRRSAYLYPPRQPDMKVAN 600
Query: 601 SNTSEGILPDMKKNLEFEGASTIPLSQSAVNNSSESSPLTVRPQSSQVARTILEHITRNP 660
SN SE ILPDMKKNLE GASTIPLSQS NN+SES+ T+RPQSSQVARTILEHITRN
Sbjct: 601 SNASESILPDMKKNLELGGASTIPLSQSVGNNTSESNLPTLRPQSSQVARTILEHITRNS 660
Query: 661 PTPKEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSDKG 720
PTPKEK EELKRAI+WKKT SSN+QTVKPNE NLAVELDSH+K+NQVDQ PQ S+ G
Sbjct: 661 PTPKEKKEELKRAIEWKKTPSSNLQTVKPNEARNLAVELDSHKKANQVDQISPPQLSNTG 720
Query: 721 KTMSMILPRESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPVP 780
TMS ILP+ES+GRNSDAA Q P G KFR SNAEPKH+ DAGLN+G S PKVVPKTVPVP
Sbjct: 721 NTMSTILPKESAGRNSDAANQYPSGLKFRFSNAEPKHQGDAGLNIGRSSPKVVPKTVPVP 742
Query: 781 ALGSKMG-------ALGGKPVFPSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEPP 840
A+G+ +G + GGKPVFPSITINKPESKW FSSDSGSAFTFPVSGASSGMLSEPP
Sbjct: 781 AVGTAVGTQIMPSSSFGGKPVFPSITINKPESKWAFSSDSGSAFTFPVSGASSGMLSEPP 742
Query: 841 TPSIFPS--TSLGGSQPLLLKPETPIPSYSFGSKKSSPTLIFSFPSTNSDTIRTEASNIK 900
TPSIFPS TSLGGSQPLLLKPE P+PSYSFGSKKSSP+L+FSFPSTN+DTI TEASNIK
Sbjct: 841 TPSIFPSTTTSLGGSQPLLLKPEAPVPSYSFGSKKSSPSLVFSFPSTNNDTICTEASNIK 742
Query: 901 FSFGSKDHTRLSFSSVGKDAVCC 912
FSFGS D+TRLSFSSVGKDAVCC
Sbjct: 901 FSFGSNDNTRLSFSSVGKDAVCC 742
BLAST of CaUC06G117530 vs. NCBI nr
Match:
XP_023515697.1 (nuclear pore complex protein NUP1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023515698.1 nuclear pore complex protein NUP1-like isoform X1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 1072.8 bits (2773), Expect = 1.4e-309
Identity = 599/918 (65.25%), Postives = 649/918 (70.70%), Query Frame = 0
Query: 1 MERAEEGTSSTPYAGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRLIT 60
MERAE GTSSTPY GGGVGGKVRKP +RKPPP+PYARPVH+QSQRRWLSKLVDP YRLIT
Sbjct: 1 MERAEGGTSSTPYVGGGVGGKVRKPNTRKPPPSPYARPVHNQSQRRWLSKLVDPTYRLIT 60
Query: 61 GGATRLLPYLFSKPLPSNALPSPGNVDQDKVEAEVEDNVSGEEPHNQRVPTLFGLPGPSG 120
GGATRLLPYLF KPLPSNALPSPG+ DQDKVEAEVEDNVSGEEP NQ V TL GLPG SG
Sbjct: 61 GGATRLLPYLFPKPLPSNALPSPGDEDQDKVEAEVEDNVSGEEPQNQGVSTLVGLPGSSG 120
Query: 121 EANISENNFDFNGREKDRENDVLAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDTMTHY 180
EAN SEN+ DFNG +KD+EN+ L GN K DVEKWIQ KTFS
Sbjct: 121 EANRSENDSDFNGCQKDKENNALGGNGKIDVEKWIQGKTFS------------------- 180
Query: 181 LRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPKLHIE 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 ASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSIVVPYGPYLYVQGMVKCQILVFYHQLVV 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 AQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQVEQP 360
RDEVSRLLE+LQSRALEPSN + NTFSPQ+IEKQVE P
Sbjct: 301 ---------------------RDEVSRLLEVLQSRALEPSNKVEDNTFSPQSIEKQVEPP 360
Query: 361 SVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNRKSEP 420
S ANRVL+M REGKQE+LERAT GNLTP PH S KL ++GASPVDIARAYMSN+KSEP
Sbjct: 361 STANRVLEMPREGKQEELERATWGNLTPRPH---SLKLREVGASPVDIARAYMSNQKSEP 420
Query: 421 GLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRGGRFG 480
GL S+K+PDDE+A HGDHQMS PFIPSMSPNPSTCWPGAMSESQRGY+TPRSQR GRFG
Sbjct: 421 GLASDKMPDDEKALRHGDHQMSMPFIPSMSPNPSTCWPGAMSESQRGYVTPRSQR-GRFG 480
Query: 481 LHTFPRTPYSRNIFSKSKSKSVCTVRRLYRINHSFTCEQLTQLQGDTQKFVNTPSPLWQQ 540
LH FPRTPYSR+IFS SKSKS +LTQLQGD QKFVNTPSPLWQ+
Sbjct: 481 LHNFPRTPYSRSIFSMSKSKS-----------------KLTQLQGDGQKFVNTPSPLWQR 540
Query: 541 SRTPAYSLMPSSNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMTVENSNT 600
SR+PAYS+M SS DPLDE TGS+G L+HKASA TNSRRSAYFYP +QPEM VEN N
Sbjct: 541 SRSPAYSVMTSSKDPLDEGTGSIGLTCSLQHKASAATNSRRSAYFYPPQQPEMEVEN-NI 600
Query: 601 SEGILPDMKKNLEFEGASTIPLSQSAVNNSSESSPLTVRPQSSQVARTILEHITRNPPTP 660
SE I PDMKKNLE GAS IPLSQS N+SESS TVRPQSSQVARTILEHITRNPPTP
Sbjct: 601 SEAIFPDMKKNLERGGASIIPLSQSVGINNSESSLPTVRPQSSQVARTILEHITRNPPTP 660
Query: 661 KEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSDKGKTM 720
KEKTEELKRA++WKKT SSNV +VKPNETS+LAV++DSHQK+NQVDQNC+PQ SDKGKTM
Sbjct: 661 KEKTEELKRAVEWKKTPSSNVLSVKPNETSSLAVDVDSHQKANQVDQNCHPQLSDKGKTM 720
Query: 721 SMILPRESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPVPALG 780
S +LP+E +G N DAA QNP+G KFRLSNAE KHKDDAGLN+GSS PK VPK PALG
Sbjct: 721 STVLPKEGAGINPDAANQNPYGLKFRLSNAESKHKDDAGLNIGSSSPKAVPKI--FPALG 734
Query: 781 SKMG-------ALGGKPVFPSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEPPTPS 840
S++G +LGGKP+FPSITINKPESKW FSSDSGSAFTFPVSGASSGMLSEPPTPS
Sbjct: 781 SEVGTQIKPSPSLGGKPIFPSITINKPESKWAFSSDSGSAFTFPVSGASSGMLSEPPTPS 734
Query: 841 IFPSTSLGGSQPLLLKPETPIPSYSFGSKKSSPTLIFSFPSTNSDTIRTEASNIKFSFGS 900
IFPSTSLGG QPLLLKPETP+PSYSF SKK+SP+L+FSFPS NSDTI TEASNIKFSFGS
Sbjct: 841 IFPSTSLGGGQPLLLKPETPVPSYSFDSKKTSPSLVFSFPSINSDTIHTEASNIKFSFGS 734
Query: 901 KDHTRLSFSSVGKDAVCC 912
DHTRLSF SVGKDAVCC
Sbjct: 901 DDHTRLSFGSVGKDAVCC 734
BLAST of CaUC06G117530 vs. NCBI nr
Match:
XP_008443983.1 (PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Cucumis melo])
HSP 1 Score: 1072.0 bits (2771), Expect = 2.8e-309
Identity = 606/924 (65.58%), Postives = 655/924 (70.89%), Query Frame = 0
Query: 1 MERAEEGTSSTPY--AGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRL 60
ME ++GTSSTPY GGGVGGKVRKPT+RKPPPTPYARP+H+QS RRWLSKLVDPAYRL
Sbjct: 1 METPDQGTSSTPYPGGGGGVGGKVRKPTTRKPPPTPYARPLHNQSDRRWLSKLVDPAYRL 60
Query: 61 ITGGATRLLPYLFSKPLPSNALPSPGNVDQ-DKVEAEVEDNVSGEE-PHNQRVPTLFGLP 120
IT GATRLLP+LFSKPLPS ALPSPG+VDQ DKVEA++EDNVSGEE P NQ TL GLP
Sbjct: 61 ITDGATRLLPFLFSKPLPSTALPSPGDVDQADKVEADLEDNVSGEEPPRNQGQSTLVGLP 120
Query: 121 GPSGEANISENNFDFNGREKDRENDVLAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDT 180
GPSGEA S NN DF+G K REND+LAGNRKFDVEKWIQEKTFS
Sbjct: 121 GPSGEAIGSGNNSDFSGCLKGRENDILAGNRKFDVEKWIQEKTFS--------------- 180
Query: 181 MTHYLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPK 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 LHIEASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSIVVPYGPYLYVQGMVKCQILVFYH 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 QLVVAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQ 360
R+EVSRLLEILQSRALEPSN + G TFSPQ+IEKQ
Sbjct: 301 -------------------------REEVSRLLEILQSRALEPSNKVDGQTFSPQSIEKQ 360
Query: 361 VEQPSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNR 420
VEQPS ANRVLK+ EGKQEDLER T GNLTPHPHS S+KL+D+GASPVDIARAYM+NR
Sbjct: 361 VEQPSAANRVLKIPHEGKQEDLERTTWGNLTPHPHS--SQKLTDVGASPVDIARAYMNNR 420
Query: 421 KSEPGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRG 480
KSEPGLLS+KIPD+ R +HGDHQMSKPFIPSMSP+PSTCWPGAMSESQRGYLTPRSQRG
Sbjct: 421 KSEPGLLSDKIPDEGRDLVHGDHQMSKPFIPSMSPSPSTCWPGAMSESQRGYLTPRSQRG 480
Query: 481 GRFGLHTFPRTPYSRNIFSKSKSKSVCTVRRLYRINHSFTCEQLTQLQGDTQKFVNTPSP 540
GRFGLH+FPRTPYSR+IFSK KSK LTQLQGD QKFV TP+P
Sbjct: 481 GRFGLHSFPRTPYSRSIFSKPKSK-------------------LTQLQGDDQKFVTTPTP 540
Query: 541 LWQQSRTPAYSLMPSSNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMTVE 600
LWQQSRTPAYS M SSND LDEA GS GPIR+LRHKASAVTNSRRSAY YP RQP+M V
Sbjct: 541 LWQQSRTPAYSQMISSNDLLDEANGSFGPIRKLRHKASAVTNSRRSAYLYPPRQPDMKVA 600
Query: 601 NSNTSEGILPDMKKNLEFEGASTIPLSQSAVNNSSESSPLTVRPQSSQVARTILEHITRN 660
NSN SE ILPDMKKNLE GASTIPLSQS NN+SES+ T+RPQSSQVARTILEHITRN
Sbjct: 601 NSNASESILPDMKKNLELGGASTIPLSQSVGNNTSESNLPTLRPQSSQVARTILEHITRN 660
Query: 661 PPTPKEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSDK 720
PTPKEK EELKRAI+WKKT SSN+QTVKPNE NLAVELDSH+K+NQVDQ PQ S+
Sbjct: 661 SPTPKEKKEELKRAIEWKKTPSSNLQTVKPNEARNLAVELDSHKKANQVDQISPPQLSNT 720
Query: 721 GKTMSMILPRESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPV 780
G TMS ILP+ES+GRNSDAA Q P G KFR SNAEPKH+ DAGLN+G S PKVVPKTVPV
Sbjct: 721 GNTMSTILPKESAGRNSDAANQYPSGLKFRFSNAEPKHQGDAGLNIGRSSPKVVPKTVPV 743
Query: 781 PALGSKMG-------ALGGKPVFPSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEP 840
PA+G+ +G + GGKPVFPSITINKPESKW FSSDSGSAFTFPVSGASSGMLSEP
Sbjct: 781 PAVGTAVGTQIMPSSSFGGKPVFPSITINKPESKWAFSSDSGSAFTFPVSGASSGMLSEP 743
Query: 841 PTPSIFPS--TSLGGSQPLLLKPETPIPSYSFGSKKSSPTLIFSFPSTNSDTIRTEASNI 900
PTPSIFPS TSLGGSQPLLLKPE P+PSYSFGSKKSSP+L+FSFPSTN+DTI TEASNI
Sbjct: 841 PTPSIFPSTTTSLGGSQPLLLKPEAPVPSYSFGSKKSSPSLVFSFPSTNNDTICTEASNI 743
Query: 901 KFSFGSKDHTRLSFSSVGKDAVCC 912
KFSFGS D+TRLSFSSVGKDAVCC
Sbjct: 901 KFSFGSNDNTRLSFSSVGKDAVCC 743
BLAST of CaUC06G117530 vs. ExPASy Swiss-Prot
Match:
Q9CAF4 (Nuclear pore complex protein NUP1 OS=Arabidopsis thaliana OX=3702 GN=NUP1 PE=1 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 9.6e-10
Identity = 70/194 (36.08%), Postives = 86/194 (44.33%), Query Frame = 0
Query: 1 MERAEEGTSSTPYAGG-GVGGKVRKPTSRKPPPTPYARPV----------HDQSQRRWLS 60
M A G SS PY GG G GGK RKPT+R+ TPY RP D WLS
Sbjct: 1 MASAARGESSNPYGGGLGTGGKFRKPTARRSQKTPYDRPTTSVRNAGLGGGDVRGGGWLS 60
Query: 61 KLVDPAYRLITGGATRLLPYLFSKPLPSNALPSPGNVDQDKVEAEVEDNVSGEEPHNQRV 120
KLVDPA RLIT A RL L K L S P + +Q K E N + H + V
Sbjct: 61 KLVDPAQRLITYSAQRLFGSLSRKRLGSGETPLQ-SPEQQKQLPERGVNQETKVGHKEDV 120
Query: 121 PTLFGLPGPSGEANISENNFDFNGREKDRENDVLAGNRKF-DVEKWIQEKTFSRNMNMAT 180
+N+S N R +D V F D+EK +Q KTF+R+
Sbjct: 121 ------------SNLSMKNGLI--RMEDTNASVDPPKDGFTDLEKILQGKTFTRS----- 170
Query: 181 IHDIDIDTMTHYLR 183
++D +T LR
Sbjct: 181 ----EVDRLTTLLR 170
BLAST of CaUC06G117530 vs. ExPASy TrEMBL
Match:
A0A1S3B9A7 (nuclear pore complex protein NUP1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103487440 PE=4 SV=1)
HSP 1 Score: 1076.6 bits (2783), Expect = 0.0e+00
Identity = 606/923 (65.66%), Postives = 655/923 (70.96%), Query Frame = 0
Query: 1 MERAEEGTSSTPY--AGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRL 60
ME ++GTSSTPY GGGVGGKVRKPT+RKPPPTPYARP+H+QS RRWLSKLVDPAYRL
Sbjct: 1 METPDQGTSSTPYPGGGGGVGGKVRKPTTRKPPPTPYARPLHNQSDRRWLSKLVDPAYRL 60
Query: 61 ITGGATRLLPYLFSKPLPSNALPSPGNVDQDKVEAEVEDNVSGEE-PHNQRVPTLFGLPG 120
IT GATRLLP+LFSKPLPS ALPSPG+VDQDKVEA++EDNVSGEE P NQ TL GLPG
Sbjct: 61 ITDGATRLLPFLFSKPLPSTALPSPGDVDQDKVEADLEDNVSGEEPPRNQGQSTLVGLPG 120
Query: 121 PSGEANISENNFDFNGREKDRENDVLAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDTM 180
PSGEA S NN DF+G K REND+LAGNRKFDVEKWIQEKTFS
Sbjct: 121 PSGEAIGSGNNSDFSGCLKGRENDILAGNRKFDVEKWIQEKTFS---------------- 180
Query: 181 THYLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPKL 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 HIEASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSIVVPYGPYLYVQGMVKCQILVFYHQ 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 LVVAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQV 360
R+EVSRLLEILQSRALEPSN + G TFSPQ+IEKQV
Sbjct: 301 ------------------------REEVSRLLEILQSRALEPSNKVDGQTFSPQSIEKQV 360
Query: 361 EQPSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNRK 420
EQPS ANRVLK+ EGKQEDLER T GNLTPHPHS S+KL+D+GASPVDIARAYM+NRK
Sbjct: 361 EQPSAANRVLKIPHEGKQEDLERTTWGNLTPHPHS--SQKLTDVGASPVDIARAYMNNRK 420
Query: 421 SEPGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRGG 480
SEPGLLS+KIPD+ R +HGDHQMSKPFIPSMSP+PSTCWPGAMSESQRGYLTPRSQRGG
Sbjct: 421 SEPGLLSDKIPDEGRDLVHGDHQMSKPFIPSMSPSPSTCWPGAMSESQRGYLTPRSQRGG 480
Query: 481 RFGLHTFPRTPYSRNIFSKSKSKSVCTVRRLYRINHSFTCEQLTQLQGDTQKFVNTPSPL 540
RFGLH+FPRTPYSR+IFSK KSK LTQLQGD QKFV TP+PL
Sbjct: 481 RFGLHSFPRTPYSRSIFSKPKSK-------------------LTQLQGDDQKFVTTPTPL 540
Query: 541 WQQSRTPAYSLMPSSNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMTVEN 600
WQQSRTPAYS M SSND LDEA GS GPIR+LRHKASAVTNSRRSAY YP RQP+M V N
Sbjct: 541 WQQSRTPAYSQMISSNDLLDEANGSFGPIRKLRHKASAVTNSRRSAYLYPPRQPDMKVAN 600
Query: 601 SNTSEGILPDMKKNLEFEGASTIPLSQSAVNNSSESSPLTVRPQSSQVARTILEHITRNP 660
SN SE ILPDMKKNLE GASTIPLSQS NN+SES+ T+RPQSSQVARTILEHITRN
Sbjct: 601 SNASESILPDMKKNLELGGASTIPLSQSVGNNTSESNLPTLRPQSSQVARTILEHITRNS 660
Query: 661 PTPKEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSDKG 720
PTPKEK EELKRAI+WKKT SSN+QTVKPNE NLAVELDSH+K+NQVDQ PQ S+ G
Sbjct: 661 PTPKEKKEELKRAIEWKKTPSSNLQTVKPNEARNLAVELDSHKKANQVDQISPPQLSNTG 720
Query: 721 KTMSMILPRESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPVP 780
TMS ILP+ES+GRNSDAA Q P G KFR SNAEPKH+ DAGLN+G S PKVVPKTVPVP
Sbjct: 721 NTMSTILPKESAGRNSDAANQYPSGLKFRFSNAEPKHQGDAGLNIGRSSPKVVPKTVPVP 742
Query: 781 ALGSKMG-------ALGGKPVFPSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEPP 840
A+G+ +G + GGKPVFPSITINKPESKW FSSDSGSAFTFPVSGASSGMLSEPP
Sbjct: 781 AVGTAVGTQIMPSSSFGGKPVFPSITINKPESKWAFSSDSGSAFTFPVSGASSGMLSEPP 742
Query: 841 TPSIFPS--TSLGGSQPLLLKPETPIPSYSFGSKKSSPTLIFSFPSTNSDTIRTEASNIK 900
TPSIFPS TSLGGSQPLLLKPE P+PSYSFGSKKSSP+L+FSFPSTN+DTI TEASNIK
Sbjct: 841 TPSIFPSTTTSLGGSQPLLLKPEAPVPSYSFGSKKSSPSLVFSFPSTNNDTICTEASNIK 742
Query: 901 FSFGSKDHTRLSFSSVGKDAVCC 912
FSFGS D+TRLSFSSVGKDAVCC
Sbjct: 901 FSFGSNDNTRLSFSSVGKDAVCC 742
BLAST of CaUC06G117530 vs. ExPASy TrEMBL
Match:
A0A1S3BA46 (nuclear pore complex protein NUP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487440 PE=4 SV=1)
HSP 1 Score: 1072.0 bits (2771), Expect = 1.4e-309
Identity = 606/924 (65.58%), Postives = 655/924 (70.89%), Query Frame = 0
Query: 1 MERAEEGTSSTPY--AGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRL 60
ME ++GTSSTPY GGGVGGKVRKPT+RKPPPTPYARP+H+QS RRWLSKLVDPAYRL
Sbjct: 1 METPDQGTSSTPYPGGGGGVGGKVRKPTTRKPPPTPYARPLHNQSDRRWLSKLVDPAYRL 60
Query: 61 ITGGATRLLPYLFSKPLPSNALPSPGNVDQ-DKVEAEVEDNVSGEE-PHNQRVPTLFGLP 120
IT GATRLLP+LFSKPLPS ALPSPG+VDQ DKVEA++EDNVSGEE P NQ TL GLP
Sbjct: 61 ITDGATRLLPFLFSKPLPSTALPSPGDVDQADKVEADLEDNVSGEEPPRNQGQSTLVGLP 120
Query: 121 GPSGEANISENNFDFNGREKDRENDVLAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDT 180
GPSGEA S NN DF+G K REND+LAGNRKFDVEKWIQEKTFS
Sbjct: 121 GPSGEAIGSGNNSDFSGCLKGRENDILAGNRKFDVEKWIQEKTFS--------------- 180
Query: 181 MTHYLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPK 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 LHIEASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSIVVPYGPYLYVQGMVKCQILVFYH 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 QLVVAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQ 360
R+EVSRLLEILQSRALEPSN + G TFSPQ+IEKQ
Sbjct: 301 -------------------------REEVSRLLEILQSRALEPSNKVDGQTFSPQSIEKQ 360
Query: 361 VEQPSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNR 420
VEQPS ANRVLK+ EGKQEDLER T GNLTPHPHS S+KL+D+GASPVDIARAYM+NR
Sbjct: 361 VEQPSAANRVLKIPHEGKQEDLERTTWGNLTPHPHS--SQKLTDVGASPVDIARAYMNNR 420
Query: 421 KSEPGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRG 480
KSEPGLLS+KIPD+ R +HGDHQMSKPFIPSMSP+PSTCWPGAMSESQRGYLTPRSQRG
Sbjct: 421 KSEPGLLSDKIPDEGRDLVHGDHQMSKPFIPSMSPSPSTCWPGAMSESQRGYLTPRSQRG 480
Query: 481 GRFGLHTFPRTPYSRNIFSKSKSKSVCTVRRLYRINHSFTCEQLTQLQGDTQKFVNTPSP 540
GRFGLH+FPRTPYSR+IFSK KSK LTQLQGD QKFV TP+P
Sbjct: 481 GRFGLHSFPRTPYSRSIFSKPKSK-------------------LTQLQGDDQKFVTTPTP 540
Query: 541 LWQQSRTPAYSLMPSSNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMTVE 600
LWQQSRTPAYS M SSND LDEA GS GPIR+LRHKASAVTNSRRSAY YP RQP+M V
Sbjct: 541 LWQQSRTPAYSQMISSNDLLDEANGSFGPIRKLRHKASAVTNSRRSAYLYPPRQPDMKVA 600
Query: 601 NSNTSEGILPDMKKNLEFEGASTIPLSQSAVNNSSESSPLTVRPQSSQVARTILEHITRN 660
NSN SE ILPDMKKNLE GASTIPLSQS NN+SES+ T+RPQSSQVARTILEHITRN
Sbjct: 601 NSNASESILPDMKKNLELGGASTIPLSQSVGNNTSESNLPTLRPQSSQVARTILEHITRN 660
Query: 661 PPTPKEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSDK 720
PTPKEK EELKRAI+WKKT SSN+QTVKPNE NLAVELDSH+K+NQVDQ PQ S+
Sbjct: 661 SPTPKEKKEELKRAIEWKKTPSSNLQTVKPNEARNLAVELDSHKKANQVDQISPPQLSNT 720
Query: 721 GKTMSMILPRESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPV 780
G TMS ILP+ES+GRNSDAA Q P G KFR SNAEPKH+ DAGLN+G S PKVVPKTVPV
Sbjct: 721 GNTMSTILPKESAGRNSDAANQYPSGLKFRFSNAEPKHQGDAGLNIGRSSPKVVPKTVPV 743
Query: 781 PALGSKMG-------ALGGKPVFPSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEP 840
PA+G+ +G + GGKPVFPSITINKPESKW FSSDSGSAFTFPVSGASSGMLSEP
Sbjct: 781 PAVGTAVGTQIMPSSSFGGKPVFPSITINKPESKWAFSSDSGSAFTFPVSGASSGMLSEP 743
Query: 841 PTPSIFPS--TSLGGSQPLLLKPETPIPSYSFGSKKSSPTLIFSFPSTNSDTIRTEASNI 900
PTPSIFPS TSLGGSQPLLLKPE P+PSYSFGSKKSSP+L+FSFPSTN+DTI TEASNI
Sbjct: 841 PTPSIFPSTTTSLGGSQPLLLKPEAPVPSYSFGSKKSSPSLVFSFPSTNNDTICTEASNI 743
Query: 901 KFSFGSKDHTRLSFSSVGKDAVCC 912
KFSFGS D+TRLSFSSVGKDAVCC
Sbjct: 901 KFSFGSNDNTRLSFSSVGKDAVCC 743
BLAST of CaUC06G117530 vs. ExPASy TrEMBL
Match:
A0A1S3B8V2 (nuclear pore complex protein NUP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487440 PE=4 SV=1)
HSP 1 Score: 1071.6 bits (2770), Expect = 1.7e-309
Identity = 606/924 (65.58%), Postives = 654/924 (70.78%), Query Frame = 0
Query: 1 MERAEEGTSSTPY--AGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRL 60
ME ++GTSSTPY GGGVGGKVRKPT+RKPPPTPYARP+H+QS RRWLSKLVDPAYRL
Sbjct: 1 METPDQGTSSTPYPGGGGGVGGKVRKPTTRKPPPTPYARPLHNQSDRRWLSKLVDPAYRL 60
Query: 61 ITGGATRLLPYLFSKPLPSNALPSPGNVDQ-DKVEAEVEDNVSGEE-PHNQRVPTLFGLP 120
IT GATRLLP+LFSKPLPS ALPSPG+VDQ DKVEA++EDNVSGEE P NQ TL GLP
Sbjct: 61 ITDGATRLLPFLFSKPLPSTALPSPGDVDQADKVEADLEDNVSGEEPPRNQGQSTLVGLP 120
Query: 121 GPSGEANISENNFDFNGREKDRENDVLAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDT 180
GPSGEA S NN DF+G K REND+LAGNRKFDVEKWIQEKTFS
Sbjct: 121 GPSGEAIGSGNNSDFSGCLKGRENDILAGNRKFDVEKWIQEKTFS--------------- 180
Query: 181 MTHYLRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPK 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 LHIEASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSIVVPYGPYLYVQGMVKCQILVFYH 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 QLVVAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQ 360
R+EVSRLLEILQSRALEPSN + G TFSPQ+IEKQ
Sbjct: 301 -------------------------REEVSRLLEILQSRALEPSNKVDGQTFSPQSIEKQ 360
Query: 361 VEQPSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNR 420
VEQPS ANRVLK+ EGKQEDLER T GNLTPHPHSS KL+D+GASPVDIARAYM+NR
Sbjct: 361 VEQPSAANRVLKIPHEGKQEDLERTTWGNLTPHPHSS---KLTDVGASPVDIARAYMNNR 420
Query: 421 KSEPGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRG 480
KSEPGLLS+KIPD+ R +HGDHQMSKPFIPSMSP+PSTCWPGAMSESQRGYLTPRSQRG
Sbjct: 421 KSEPGLLSDKIPDEGRDLVHGDHQMSKPFIPSMSPSPSTCWPGAMSESQRGYLTPRSQRG 480
Query: 481 GRFGLHTFPRTPYSRNIFSKSKSKSVCTVRRLYRINHSFTCEQLTQLQGDTQKFVNTPSP 540
GRFGLH+FPRTPYSR+IFSK KSK LTQLQGD QKFV TP+P
Sbjct: 481 GRFGLHSFPRTPYSRSIFSKPKSK-------------------LTQLQGDDQKFVTTPTP 540
Query: 541 LWQQSRTPAYSLMPSSNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMTVE 600
LWQQSRTPAYS M SSND LDEA GS GPIR+LRHKASAVTNSRRSAY YP RQP+M V
Sbjct: 541 LWQQSRTPAYSQMISSNDLLDEANGSFGPIRKLRHKASAVTNSRRSAYLYPPRQPDMKVA 600
Query: 601 NSNTSEGILPDMKKNLEFEGASTIPLSQSAVNNSSESSPLTVRPQSSQVARTILEHITRN 660
NSN SE ILPDMKKNLE GASTIPLSQS NN+SES+ T+RPQSSQVARTILEHITRN
Sbjct: 601 NSNASESILPDMKKNLELGGASTIPLSQSVGNNTSESNLPTLRPQSSQVARTILEHITRN 660
Query: 661 PPTPKEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSDK 720
PTPKEK EELKRAI+WKKT SSN+QTVKPNE NLAVELDSH+K+NQVDQ PQ S+
Sbjct: 661 SPTPKEKKEELKRAIEWKKTPSSNLQTVKPNEARNLAVELDSHKKANQVDQISPPQLSNT 720
Query: 721 GKTMSMILPRESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPV 780
G TMS ILP+ES+GRNSDAA Q P G KFR SNAEPKH+ DAGLN+G S PKVVPKTVPV
Sbjct: 721 GNTMSTILPKESAGRNSDAANQYPSGLKFRFSNAEPKHQGDAGLNIGRSSPKVVPKTVPV 742
Query: 781 PALGSKMG-------ALGGKPVFPSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEP 840
PA+G+ +G + GGKPVFPSITINKPESKW FSSDSGSAFTFPVSGASSGMLSEP
Sbjct: 781 PAVGTAVGTQIMPSSSFGGKPVFPSITINKPESKWAFSSDSGSAFTFPVSGASSGMLSEP 742
Query: 841 PTPSIFPS--TSLGGSQPLLLKPETPIPSYSFGSKKSSPTLIFSFPSTNSDTIRTEASNI 900
PTPSIFPS TSLGGSQPLLLKPE P+PSYSFGSKKSSP+L+FSFPSTN+DTI TEASNI
Sbjct: 841 PTPSIFPSTTTSLGGSQPLLLKPEAPVPSYSFGSKKSSPSLVFSFPSTNNDTICTEASNI 742
Query: 901 KFSFGSKDHTRLSFSSVGKDAVCC 912
KFSFGS D+TRLSFSSVGKDAVCC
Sbjct: 901 KFSFGSNDNTRLSFSSVGKDAVCC 742
BLAST of CaUC06G117530 vs. ExPASy TrEMBL
Match:
A0A6J1JJZ8 (nuclear pore complex protein NUP1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485124 PE=4 SV=1)
HSP 1 Score: 1063.1 bits (2748), Expect = 6.3e-307
Identity = 595/918 (64.81%), Postives = 646/918 (70.37%), Query Frame = 0
Query: 1 MERAEEGTSSTPYAGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRLIT 60
MERAE GTSSTPY GGGVGGKVRKP +RKPPP+PYARPVH+QSQRRWLSKLVDPAYRLIT
Sbjct: 1 MERAEGGTSSTPYGGGGVGGKVRKPNTRKPPPSPYARPVHNQSQRRWLSKLVDPAYRLIT 60
Query: 61 GGATRLLPYLFSKPLPSNALPSPGNVDQDKVEAEVEDNVSGEEPHNQRVPTLFGLPGPSG 120
GGATRLLPYLF KPLPSNALPSPG+ DQDKVE EVEDNVSGEEP N+ V TL GLPG SG
Sbjct: 61 GGATRLLPYLFPKPLPSNALPSPGDEDQDKVEVEVEDNVSGEEPQNKGVSTLVGLPGSSG 120
Query: 121 EANISENNFDFNGREKDRENDVLAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDTMTHY 180
EAN SEN+ DFNG +KD+EN+ L GN K DVEKWIQ KTFS
Sbjct: 121 EANRSENDSDFNGCQKDKENNALGGNGKIDVEKWIQGKTFS------------------- 180
Query: 181 LRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPKLHIE 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 ASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSIVVPYGPYLYVQGMVKCQILVFYHQLVV 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 AQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQVEQP 360
RDEVSRLL +LQSRALEPSN + NTFSPQ+IEKQVEQ
Sbjct: 301 ---------------------RDEVSRLLVVLQSRALEPSNKVEDNTFSPQSIEKQVEQL 360
Query: 361 SVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNRKSEP 420
S ANRVL+M REGKQE+LERAT GNLTPHPH S KL ++GASPVDIAR YMSN+KSEP
Sbjct: 361 STANRVLEMPREGKQEELERATWGNLTPHPH---SLKLREVGASPVDIARVYMSNQKSEP 420
Query: 421 GLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRGGRFG 480
GL S+K+PDDE+A HGDHQM KPFIPSMSPNPSTCWPGAMSESQRGY+TPRSQR GRFG
Sbjct: 421 GLASDKMPDDEKALRHGDHQMPKPFIPSMSPNPSTCWPGAMSESQRGYVTPRSQR-GRFG 480
Query: 481 LHTFPRTPYSRNIFSKSKSKSVCTVRRLYRINHSFTCEQLTQLQGDTQKFVNTPSPLWQQ 540
LH FPRTPYSR+IFS SKSKS +LTQLQGD QKFVNTPSPLW++
Sbjct: 481 LHNFPRTPYSRSIFSMSKSKS-----------------KLTQLQGDDQKFVNTPSPLWRR 540
Query: 541 SRTPAYSLMPSSNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMTVENSNT 600
SR+PAYS+M SS DPLDEATGS+G L+HK SAVTNSRRSAYFYP +QPEM VEN N
Sbjct: 541 SRSPAYSMMTSSKDPLDEATGSIGLTSSLQHKTSAVTNSRRSAYFYPPQQPEMEVEN-NI 600
Query: 601 SEGILPDMKKNLEFEGASTIPLSQSAVNNSSESSPLTVRPQSSQVARTILEHITRNPPTP 660
SE I PDMKKNLE GASTIPLSQS N+SESS T+RPQSSQVARTILEHITRNPPTP
Sbjct: 601 SEAIFPDMKKNLERGGASTIPLSQSVGINNSESSLPTLRPQSSQVARTILEHITRNPPTP 660
Query: 661 KEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSDKGKTM 720
KEKTEELKRAI WKKT SSNV +VKPNETS+LAV++DSHQK+NQVDQNC+PQ SDKGKTM
Sbjct: 661 KEKTEELKRAIDWKKTPSSNVLSVKPNETSSLAVDIDSHQKANQVDQNCHPQLSDKGKTM 720
Query: 721 SMILPRESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPVPALG 780
S +LP+E +GRN DAA QNP+ KFRLSNAE KHKDDAGLN+GSS PK VPK ALG
Sbjct: 721 STVLPKEGAGRNPDAANQNPYCLKFRLSNAESKHKDDAGLNIGSSSPKAVPKI--FRALG 734
Query: 781 SKMG-------ALGGKPVFPSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEPPTPS 840
S++G +LGGKP+FPSITINKPESKW FSSDSGSAFTFPVSGASSGMLSEPPTPS
Sbjct: 781 SEVGTQIKHSPSLGGKPIFPSITINKPESKWAFSSDSGSAFTFPVSGASSGMLSEPPTPS 734
Query: 841 IFPSTSLGGSQPLLLKPETPIPSYSFGSKKSSPTLIFSFPSTNSDTIRTEASNIKFSFGS 900
IFPSTSLGG QPLL KPETP+PSYSF SKK+SP+L+FSFPS NSDTI EASNIKFSFGS
Sbjct: 841 IFPSTSLGGGQPLLFKPETPVPSYSFDSKKTSPSLVFSFPSINSDTIGPEASNIKFSFGS 734
Query: 901 KDHTRLSFSSVGKDAVCC 912
DHTRLSF SVGKDAVCC
Sbjct: 901 DDHTRLSFGSVGKDAVCC 734
BLAST of CaUC06G117530 vs. ExPASy TrEMBL
Match:
A0A6J1HA42 (nuclear pore complex protein NUP1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461519 PE=4 SV=1)
HSP 1 Score: 1062.4 bits (2746), Expect = 1.1e-306
Identity = 594/918 (64.71%), Postives = 647/918 (70.48%), Query Frame = 0
Query: 1 MERAEEGTSSTPYAGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRRWLSKLVDPAYRLIT 60
MERAE GTSSTPY GGG+GGKVRKP SRKP P+PYARPVH+QS RRWLSKLVDPAYRLIT
Sbjct: 1 MERAEGGTSSTPYGGGGIGGKVRKPNSRKPLPSPYARPVHNQSHRRWLSKLVDPAYRLIT 60
Query: 61 GGATRLLPYLFSKPLPSNALPSPGNVDQDKVEAEVEDNVSGEEPHNQRVPTLFGLPGPSG 120
GGATRLLPYLF KPLPSNALPSPG+ DQDKVEAEVEDNVSGEEP N V TL GLPG SG
Sbjct: 61 GGATRLLPYLFPKPLPSNALPSPGDEDQDKVEAEVEDNVSGEEPQNLGVSTLVGLPGSSG 120
Query: 121 EANISENNFDFNGREKDRENDVLAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDTMTHY 180
EAN SENN DFNG +KD+EN+ L GN K DVEKWIQ KTFS
Sbjct: 121 EANRSENNSDFNGCQKDKENNALGGNGKIDVEKWIQGKTFS------------------- 180
Query: 181 LRYLDRDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPKLHIE 240
Sbjct: 181 ------------------------------------------------------------ 240
Query: 241 ASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSIVVPYGPYLYVQGMVKCQILVFYHQLVV 300
Sbjct: 241 ------------------------------------------------------------ 300
Query: 301 AQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQVEQP 360
RDEVSRLLE+LQSRALEPSN + NTFSPQ+IEKQVEQP
Sbjct: 301 ---------------------RDEVSRLLEVLQSRALEPSNKVEDNTFSPQSIEKQVEQP 360
Query: 361 SVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNRKSEP 420
S ANRVL+M REGKQE+LERAT GNLTPHPH S KL ++GASPVDIARAYMSN+KSEP
Sbjct: 361 STANRVLEMPREGKQEELERATGGNLTPHPH---SLKLREVGASPVDIARAYMSNQKSEP 420
Query: 421 GLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRGGRFG 480
GL S+K+PDDE+A HGDHQM KPFIPSMSPNPSTCWP AMSESQRGY+TPRSQR GRFG
Sbjct: 421 GLASDKMPDDEKALRHGDHQMFKPFIPSMSPNPSTCWPSAMSESQRGYVTPRSQR-GRFG 480
Query: 481 LHTFPRTPYSRNIFSKSKSKSVCTVRRLYRINHSFTCEQLTQLQGDTQKFVNTPSPLWQQ 540
LH FPRTPYSR+IFS SKSKS +LTQLQGD QKFVNTPSPLWQ+
Sbjct: 481 LHNFPRTPYSRSIFSMSKSKS-----------------KLTQLQGDGQKFVNTPSPLWQR 540
Query: 541 SRTPAYSLMPSSNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMTVENSNT 600
SR+P YS+M SS DPLDEATGS+G L+HKASAVTNSRRSAYFYP +QPEM +EN N
Sbjct: 541 SRSPTYSMMTSSKDPLDEATGSIGLTCSLQHKASAVTNSRRSAYFYPPQQPEMEIEN-NI 600
Query: 601 SEGILPDMKKNLEFEGASTIPLSQSAVNNSSESSPLTVRPQSSQVARTILEHITRNPPTP 660
SE I PDMKKNL+ GASTIPLSQS N+SESS TVRPQSSQV RTILEHITRNPPTP
Sbjct: 601 SEAIFPDMKKNLDRGGASTIPLSQSVGINNSESSLPTVRPQSSQVVRTILEHITRNPPTP 660
Query: 661 KEKTEELKRAIQWKKTSSSNVQTVKPNETSNLAVELDSHQKSNQVDQNCNPQSSDKGKTM 720
KEKTEELKRAI+WKKT S+NV +VKPNETS+LAV++DSHQK+NQVDQNC+PQ SD+GKTM
Sbjct: 661 KEKTEELKRAIEWKKTPSANVPSVKPNETSSLAVDIDSHQKANQVDQNCHPQLSDEGKTM 720
Query: 721 SMILPRESSGRNSDAAIQNPFGPKFRLSNAEPKHKDDAGLNVGSSLPKVVPKTVPVPALG 780
S +LP+E +GRN DAA QNP+G KFRLSNAE KHKDDAGLN+GSS PK VPK PALG
Sbjct: 721 STVLPKEGAGRNPDAANQNPYGLKFRLSNAESKHKDDAGLNIGSSSPKAVPKI--FPALG 734
Query: 781 SKM-------GALGGKPVFPSITINKPESKWTFSSDSGSAFTFPVSGASSGMLSEPPTPS 840
S++ +LGGKP+FPSITI+KPESKW FSSDSGSAFTFPVSGASSGMLSEPPTPS
Sbjct: 781 SEVWTQIKPSPSLGGKPIFPSITISKPESKWAFSSDSGSAFTFPVSGASSGMLSEPPTPS 734
Query: 841 IFPSTSLGGSQPLLLKPETPIPSYSFGSKKSSPTLIFSFPSTNSDTIRTEASNIKFSFGS 900
IFPSTSLGG QPLLLK ETP+PSYSF SKK+SP+L+FSFPS NSDTI EASNIKFSFGS
Sbjct: 841 IFPSTSLGGGQPLLLKTETPVPSYSFDSKKTSPSLVFSFPSINSDTIGPEASNIKFSFGS 734
Query: 901 KDHTRLSFSSVGKDAVCC 912
DHTRLSF SVGKDAVCC
Sbjct: 901 DDHTRLSFGSVGKDAVCC 734
BLAST of CaUC06G117530 vs. TAIR 10
Match:
AT5G20200.1 (nucleoporin-related )
HSP 1 Score: 229.6 bits (584), Expect = 1.0e-59
Identity = 269/957 (28.11%), Postives = 398/957 (41.59%), Query Frame = 0
Query: 8 TSSTPYAGGGVGGKVRKPTSRKPPPTPYARPVHDQSQRR-WLSKLVDPAYRLITGGATRL 67
T+++ Y GGVGGK+++ ++R+ TPY+RP +Q QRR W+S++VDPAYR+I+GGATR+
Sbjct: 14 TTTSSYPTGGVGGKLKRQSARRHAATPYSRPTQNQVQRRPWISRIVDPAYRIISGGATRI 73
Query: 68 LPYLFSKPLPSNALPSPGNVDQDKVEAEVEDNVSGEEP-----HNQRVPTLFGLPGPSGE 127
LPY FS + AL +P DQ++ + E+++N +P N+ P + GPSG
Sbjct: 74 LPYFFSNAASAPALAAPPE-DQNQHQGELQNNPQDNDPSVTPISNKPEPASIEVGGPSGT 133
Query: 128 ANISENNFDFNGREKDRE--NDVLAGNRKFDVEKWIQEKTFSRNMNMATIHDIDIDTMTH 187
AN++E NF + + + + ND +A + ++E+ ++ KTFS+ +ID +
Sbjct: 134 ANVNEGNFSISAQRRGKAALNDDVAIS---ELERLMEGKTFSQ---------AEIDRLIE 193
Query: 188 YL--RYLD-RDMTRTVKKFISILKYWCLEVNLKVTAQQSQHLLDLYSSVHIMYDTNMFPK 247
+ R +D D+ R + LE+ L+ A+++ L D
Sbjct: 194 MISSRAIDLPDVKRDERN---------LEIPLREGAKKNMSLFD---------------- 253
Query: 248 LHIEASTFFHHRLQLKCFLTKMQQDGTLHPRDGQMSIVVPYGPYLYVQGMVKCQILVFYH 307
+ + +D I P
Sbjct: 254 ----------------------KAKEPIGGKDANSEIWATPTP----------------- 313
Query: 308 QLVVAQCLYSVRVLDFSKLADDILCRDEVSRLLEILQSRALEPSNTLVGNTFSPQTIEKQ 367
L +LD K+ D
Sbjct: 314 -------LAKSIILDGDKIRD--------------------------------------- 373
Query: 368 VEQPSVANRVLKMSREGKQEDLERATLGNLTPHPHSSVSRKLSDIGASPVDIARAYMSNR 427
++G SP ++A+AYM +
Sbjct: 374 -------------------------------------------EVGLSPAELAKAYMGGQ 433
Query: 428 KSEPGLLSEKIPDDERASLHGDHQMSKPFIPSMSPNPSTCWPGAMSESQRGYLTPRSQRG 487
S + +E+ L + K + S S PS CWPG S Q G+ TP+S+R
Sbjct: 434 TSSSS-SQGFVARNEKDCLDRSMLVGKSSLASPSSKPSACWPGIKSSEQSGFATPQSRRE 493
Query: 488 GRFGLHTFPRTPYSRNIFSKSKSKSVCTVRRLYRINHSFTCEQLTQLQGDTQKFV-NTPS 547
+GL FPRTPYSR I S SKSK L QLQ D+ K + N S
Sbjct: 494 S-YGLQNFPRTPYSRTILSNSKSK-------------------LMQLQNDSSKHLSNLQS 553
Query: 548 PLWQQSRTPAYSLMPSSNDPLDEATGSVGPIRRLRHKASAVTNSRRSAYFYPNRQPEMTV 607
P QS Y + D G GP RR R A T S S Y P+R
Sbjct: 554 P--SQSVERRYGQLSKGRD-----GGLFGPSRRTRQSA---TPSMVSPYSRPSRGAS-RF 613
Query: 608 ENSNTSEGILPDMKKNLEFEGASTIPLSQSAV---NNSSESSPLTVRPQSSQVARTILEH 667
ENS + K+ E +S + SQ + +E LTV SSQ+ARTIL+H
Sbjct: 614 ENS--------AIMKSSEAGESSYLSRSQITTYGKHKEAEVGTLTVPTHSSQIARTILDH 673
Query: 668 I--TRNPPTPKEKTEELKRAIQWK--------KTSSSNVQTVKPNETSNLAVELDSHQKS 727
+ T++ TPK KT ELK A W+ + SSS+V VK + ++ L ++ +
Sbjct: 674 LERTQSQSTPKNKTAELKLATSWRHPQSSKTVEKSSSDVTNVKKDGSAKLHEDIQNIFSQ 733
Query: 728 NQVDQNCNPQSSDKG-------KTMSM---ILPRESSGRNSDAAIQNPFG-PKFRLSNAE 787
NQ P ++ G KT S I + + A+Q FG PK LS +
Sbjct: 734 NQPSSVLKPPATTTGDIQNGMNKTASATNGIFRGTQAASSGGNALQYEFGKPKGSLSRSM 762
Query: 788 PKHKDDAGLNVGSSLP-KVVPKTVPVPALGSKMGALG-GKPVFPSITINKPESKWTFSSD 847
+ + ++P +T +P S +LG KPV PSI++ KP KW S
Sbjct: 794 HDELGTSSQDAAKAVPYSFGGETANLPKPPSH--SLGNNKPVLPSISVAKPFQKWAVPSG 762
Query: 848 SGSAFTFPVSGASSGMLSEPPTPSIFPST-----SLGGSQPLL----LKPETPIPSYSF- 907
S + FTFPVS + SEP TPSI P T + GG + + + IP +SF
Sbjct: 854 SNAGFTFPVSSSDGTTSSEPTTPSIMPFTTSPPVASGGGVAITNHHEARKDYEIPQFSFD 762
Query: 908 GSKK--SSPTLIFSFPSTNSDTIRTEAS---NIKFSFGSKDHTRLSFSSVGKDAVCC 912
GS + L+FSFPS + + + + IK++FGS+ R+SFSS G D VCC
Sbjct: 914 GSNRRGDKSPLVFSFPSVSEEVVSEDDDARFGIKYTFGSEKPERISFSSAGSDGVCC 762
BLAST of CaUC06G117530 vs. TAIR 10
Match:
AT3G10650.1 (BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). )
HSP 1 Score: 67.4 bits (163), Expect = 6.8e-11
Identity = 70/194 (36.08%), Postives = 86/194 (44.33%), Query Frame = 0
Query: 1 MERAEEGTSSTPYAGG-GVGGKVRKPTSRKPPPTPYARPV----------HDQSQRRWLS 60
M A G SS PY GG G GGK RKPT+R+ TPY RP D WLS
Sbjct: 1 MASAARGESSNPYGGGLGTGGKFRKPTARRSQKTPYDRPTTSVRNAGLGGGDVRGGGWLS 60
Query: 61 KLVDPAYRLITGGATRLLPYLFSKPLPSNALPSPGNVDQDKVEAEVEDNVSGEEPHNQRV 120
KLVDPA RLIT A RL L K L S P + +Q K E N + H + V
Sbjct: 61 KLVDPAQRLITYSAQRLFGSLSRKRLGSGETPLQ-SPEQQKQLPERGVNQETKVGHKEDV 120
Query: 121 PTLFGLPGPSGEANISENNFDFNGREKDRENDVLAGNRKF-DVEKWIQEKTFSRNMNMAT 180
+N+S N R +D V F D+EK +Q KTF+R+
Sbjct: 121 ------------SNLSMKNGLI--RMEDTNASVDPPKDGFTDLEKILQGKTFTRS----- 170
Query: 181 IHDIDIDTMTHYLR 183
++D +T LR
Sbjct: 181 ----EVDRLTTLLR 170
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038879645.1 | 0.0e+00 | 68.55 | nuclear pore complex protein NUP1 isoform X2 [Benincasa hispida] | [more] |
XP_038879644.1 | 0.0e+00 | 65.69 | nuclear pore complex protein NUP1 isoform X1 [Benincasa hispida] | [more] |
XP_008443985.1 | 0.0e+00 | 65.66 | PREDICTED: nuclear pore complex protein NUP1 isoform X3 [Cucumis melo] | [more] |
XP_023515697.1 | 1.4e-309 | 65.25 | nuclear pore complex protein NUP1-like isoform X1 [Cucurbita pepo subsp. pepo] >... | [more] |
XP_008443983.1 | 2.8e-309 | 65.58 | PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
Q9CAF4 | 9.6e-10 | 36.08 | Nuclear pore complex protein NUP1 OS=Arabidopsis thaliana OX=3702 GN=NUP1 PE=1 S... | [more] |
Match Name | E-value | Identity | Description | |
A0A1S3B9A7 | 0.0e+00 | 65.66 | nuclear pore complex protein NUP1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10348... | [more] |
A0A1S3BA46 | 1.4e-309 | 65.58 | nuclear pore complex protein NUP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348... | [more] |
A0A1S3B8V2 | 1.7e-309 | 65.58 | nuclear pore complex protein NUP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348... | [more] |
A0A6J1JJZ8 | 6.3e-307 | 64.81 | nuclear pore complex protein NUP1-like isoform X1 OS=Cucurbita maxima OX=3661 GN... | [more] |
A0A6J1HA42 | 1.1e-306 | 64.71 | nuclear pore complex protein NUP1-like isoform X1 OS=Cucurbita moschata OX=3662 ... | [more] |
Match Name | E-value | Identity | Description | |
AT5G20200.1 | 1.0e-59 | 28.11 | nucleoporin-related | [more] |
AT3G10650.1 | 6.8e-11 | 36.08 | BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.... | [more] |