CaUC06G116680 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G116680
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
LocationCiama_Chr06: 18619053 .. 18629236 (-)
RNA-Seq ExpressionCaUC06G116680
SyntenyCaUC06G116680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTCATCTCCTATAGGAGTTATTTAAGACAATTGAAGACTTTCTACATTTTTAGTTTTGCATTTTGACTTATTAATTAGTATGCAATTAAGTTTTAAGTTCCTAGGTAGAAATTTGTATAATTTGCATTTAATAGAGTTGAATGACTTTTGAGTTCTTGGTCATATCCACGACCTTTTGGCTTGTAAAAAGGCTTGTAATCCTCTTCAAAACTCAGATTATTAATATTAAAAAGTTTATGCTTATTCCACCTCTTTGGTGTTACCTTTTCTTTCAAATCTTGCTTTAGATTTGATGTTTAAATCAATTCATTGGATTAGTTTTGATCAAACTAATTCTGGAGTGGGTTGTCTTAGGATCTAAGAGTGACCATCATAGATTCTAAGTTCGATCTAAATTAGCTTTCTTTGTGAGTGTTTGTAAGGATCCTAAAAGGACCTTTAACTTTGCATCAAACGAACATTGCAGGCGCTTATCATTTCGTATCAGAGCATTTGGTCATCATCCTTGGTCGGCTCTAGAAGTGAAATATCTTTACTTTGTTTCATTTATTTTTCGACTCTCAATTTGTTTTCTTTATAATTCAAGATATACTACAACTTGTATTGAAATCTTCTTAAAATTTGTTCTTGGATCTTTTTAAAAAGGAAAAAAGAAAAAAACAATAGCAAAAAAAAAAAAATCAGCAACAAAAGGAAAAAAACAGTAGGAAAAAAAAGTTAAAGATCCAAAGGACATGAAAAGTTTTTGTCATTATCCTTTTACTTTATTCTAATTTTCAAGTTGTTGATCCTAAGTTTGAGTTACTCTAGTCTTATTTGTAAGAGTTGACCATTTGAATTGGTTTCATCAAATTTTTAGTAAGATTGCACCAAATTTTAAGCCAATCCTTACATCTTTAACCTAGTACCAAAAGCATACCCTTGAGTGATAAACACGAGTGTCCTCAAGTGAAATTACTGAGAAGTATGGTGAAGTCCTTTTATTACTAACTTGAAAATTTCATAGGGTGAAGATGTCACACCCCCTCCCGGATTATCCTCCATAACCCGAGAAGAGATGTGAAGACAGCAGTTACCGACTACCCTGTCACGTAACCCACTGTCAACCTTCCCATCCAAATGCCCTTGACAAACCTCGACTTCGATCGGCAACAGGAACTGTAATTCTACCTGAAAATGGAAAACATTTAAAAGAATGAGCTAACGGCTCAGTGAGTAACAGTTATTAGAAAATAATATATTCAAACTGTAAAACTTGTAAATCTCGCATAGAATATAACGCTTCAGATTATATTAGTTAATGTTCCAACTTCATCATAACATATGCCTATCTGTTTTAGGGTAATTGTTCAAAACTTCACTCATTCCATAATCGTATTCCCTAGTTGAGGCGGAGCGGTGCTCTACACTTCTCAACCTCGTATTTCCTCAATCACATACTCAAATGCCTTCACACTTCGTCCCTCGCCATTTCCAATCCTTCAAGTGCCTTCACATATCGTCCCTCAGCACTGTGTTTCATTGCCAACCACTGCTCAAGTGCCTTCACTCATGGTCCCTCAGCACTTGGCTATCATGTTTTAGATTTCCTTATGCCTTCACACAGGGTCCCTCAGCATTGGAATCCGTCTCATTCAACTACTCAAATGCCTTATCCCATGGTCCCTCAGCATTGAGTATCATATAACATATCTCCCATAGGCCTTCACACGGGGTCCCTCAGCCTTGGGTTACCTTAAGTTATTACATATCATAATCTTTAAACTCATTAACACCACACAAACGTTCAATAGCTATACCATGCTATGAGTAACCACTTCTAATACTCAATACAAAACTTTAATTATCAAACAGCTTGCTTATCATACAAGTGTATCTCCAAATTTTCCATGAAAACATATAACACCATGCTCTTCAGGAATTTCACGAAAAACATGTATCAATCAATCACCATGCATTTTATATCTCATAGCAAATACCCAGCAATCTCAAAGTTTTCAAATAAAACACATGCTCTTATTTCTATAAACAACATATTCATATACTTTATGTGTCACACCCCCTCCCGGATTACCTACCTATCCTGAAAGGAAATGTGAAGACAATAAACATCACCCCTCTTGTGACGCATATTGTCCCATCTTACATAACTTCTTGTGCACACATTTCATACATAAACATTCATAGAACTCAGCCCTATTACACATGATCATAATATAACAATCCTTCCTGTACAAAGTACACTTTTATCATATCACATAATTAAACTTCCATAGATCCACCATACATTTATACAAAACTACATTACGATCCCCACTCTTTACACAACTTGATCTACATGCCACCTACATAAGGTTATATACAACGTACAACTCTCAAATGTGACTGAATTTCGAGAACTCGAGACTTAGGCAGGGTGAGCTGAAGTAGGCTAAGCACCGGGAACGTCCTTGCTACCTGGGGGGAAAAGAAAACATCGAAAACGTGAGCTAAAAGCCCCGTGAGTGACGAATTTTGTAAAACTATCATTTGTTCAAAAACAGGCATGTTAAAAACATAATAACGCCATAAACGTAAACGTGATTCAAATAATCACTTCTGTAAAATCATAATTTTAACAATGTAAACAAATCACATATGTTCATGCCAAAATGATCGTATACGAAAAACAATTCGTTCTCATAACTTCCCTTAGTCAGGGCGGAGCAAGACTCAACGCACCTGACGTCGAAAACATCCTTAGCTGAGGCGGAGTAAAACTCAACGCACTCAACGTCGATAACAATCCTTAGTTGGGGTGGAGCAAGACTCAACACACCCAACGTCACAACCTCTATGTGCACATAGGAATATGGCGGGTTGCCCAAGTACCTTCTACGAGTCCTTCAGTACTGGGTCCCGGGGAAACTCACATGCCTTCTCATGTCCTTCAGCAGAGCCTCCTCTAAAACATTTTAGAAACCAGCATTATACGTGAATAGATCACATGAAAATCTTTCATGAAAATCAAATATATTACGATAAACAACATTTCAAAACATGCCATTCAACATCTTATAGAAACGGATAAAACATGCCTTGTGAACAATATCATCAAACATCATGCTTTTCAAGAAAACAGTTCATCTCAAAGCCATATCTCATAAGAAAAACCAAACTAAACATTTTCAATAAATTTCGTTTTCAAAGAAAGAAAAGTGTCACTCACAACTTGTCCTTAGGCCCTGAGCGGATCATATGCCTTTCCGAGCTCTTCTTGGCCTATAAATATACATTCCTCACGTTACGTTTTCCTTAACTTCCTTTACATGATCATTAAATGTGCATACTTAAACTCTAATCATGATTTACCACCGAGACTCCCTTTCTTTCCTAAAGTACACATAATAAGCGGATTCTATGTCATTAGCGAGATTACCAACGAGATTTCACCTTACTAGCGAGTTTACTAACGAAATTACACAACAGGTCACGGCACTAGCGACACTGGCATAAGCGAAACCAGCGAGACTACCTGAGGAGCGTTACTGAGCGAGAGCCAGCGAGATTTGTGAGAGAAAAACCGTCTTTGCTCGACCAGCGAGACTAGTGTCGCTACTCACGCCAATTCCTCAGCATTACCTGCTTCCAAATGACATCCGACAGCAGAGTTTTCTCCTTTCCTGTTTGTTCTCATTTCTATCAATTCAAAGTCATATTTCCAGCCAGATTTAGAACTTTTTTCCTTCTATAAACTTGTAGAAAAACATGTTTTCTAGCTTACCTCAAAATTTCGTGGCCTAACTCGTCCTGGTTTGTCAGATATTGCAAGTTTTCTCCGCGTTACTTCAGATTGCACAGAAAATTCGTATCAGTAACTTCCAGCTAAACGTTCACATGTTTTTATTCCGTTTCAACTTAGGCATCCTTCATAAAAGTTGTTCAAAATTGAGTTAGCTTACTAACCTTAAAATTTCAGCCCAAAATTCAATCTCTTCAGCTCGATATTCACCAAACACCAGACCTGGTTCGAGCTGTGTGACAACAGATGAAGCTTCTGTTTCAGCTTCAGTTTTACCATGAAATCGTCCAAAACCTTGCACGAAATTGTCCTAGGATTCTTCTTCAACCTCTCCACGATGTGCAGCTGAAAGATAGCATAGAAATGAGTTTGGAAATGAGTAGAAAGAAGTCAGCAACATTTTCTTTTCAAATAAAACCATAACCGACTTCCATCCTTATCCCTTTTTTTTTTCTTTTCTTTTTTCCTTTTCTTCTCTTTGTCTTCTTTCCCTTTTGGTTTCCTTTTCTTTTTCTCTTTTTTTTTTTTTTACAAAATAAGATTATTAATATTAATTTGCTTAAAGCTTTTGAACGTGCTTACCAATTAGGTGCTTACAATATGTATATATGAAAACGCATGCTTTATTTCATTAGAAACCATATAATCATTTCATAATGAACTCGTTTATATTTTGTAAAACGCAGGTGTTACTCACCTGTACTTAGCTAAAGAATCCTTCTTCTTCCTATGCTCTAGTTCCTCTTCCCGAGCTTTCTGAACATAGCGTTCTAACTCTGGAACGCAAGGCTCCACTTTCCTCTGTCAGCTCAGTTGAACGCATCTCTACTCTGCAACGCAAGGTTGGTAACGCAAAGCTGATTATTTCCGCCAAGTGCATCCCGACTCTTTTTACTTCCCTTTCGGATGCGTCGCCCTCTCTTGAATGCAAGGTCCATCATGAACGCGTCATCTAACTGTGGACGCCGCGGTCACCTTGGACATTATGTTTGTCCTCAACGCATAGCCGACCCTTTTTAACACCAGACAACTTCTTTACATAAAATAACAAAGTTGTCAAATACCTTCTTTCTTGGCCGCATACTCCTACCACAGACGTCCTGGTTGCCTTCTCTTTTCTCTCTAGAATTCTTCTTTGGGAGTCATCAGTCGCTCCTCTTCCCTCAAAGTTCTATTTATAGGGAGCTTGCCATCCACCTTTTCCTCTCCTTTTGCCACTTGTTTGCCACATGTCATGCTGCATGCTTAATTAACCATGCATTAGTCCAAGTGTCACCTTGCATGACTTACTTAACATGCCTTTAACACCTCCTACTGATAAGGTATCAAATCTGTACATAGCCACCTGGTCTTATAAGCTTATCTTATGCGTCCAACAATTTCAACAGATAACCATTTATTCAACACAATGCCCTCATGCGTTCATTAAGTTTCCTTTAAAGTTTGAGCTTCACTACTCATTTTTCTAACTCACAGTCAACCATACTACTCTTTGACGCGTAAGGATAACTGTCTTTAACGCATAGGGACCTCAATGCTTAACATCCTTACCAATGCATGGTAAGCCGAGTACGTTTCTTCCTCCGCCAACGCAGCGACTACTTCAGTTCACTACCGTTCGTGATCACCCTCAACGCATAGCCGCACTATTATAAACCAGTGCTTACACAATGCTACTAGGCGTTAATGACAAACGCCCAATACTGTGTTTGTATCTCATCGCATCATACCATGCGTCCAACTCCTTCCTTATGTTCATAACAACTCCTTCTCAAGCTCTTTCTCTATGCATTGGTACTATCGCGTTTACCTTCATCTTGCGTTCAATGACCATCTTCCTATCCTTGAACTTAGACTACTTCTCTTAAGGATAGATTAGCATGCGTCCACCACATGCACTAGTTTTTATGTTTACTTCCATGCGTCCACCCTTACTATGTGTCACACCCCATCCCAGATACACTCTATACCTAGGATTGAGCGTGATACTGTTCTTCAAAAATACATAATGAAAATAGATACCAGATGAATCTCAAATTTAAAACAACATTTCTATTGAAATACTAGGAAAAGACACAATCTCTCAACAAGCATTTTCTGCATATATATATATATATATATATATATATATATATATATATATATATATNNNNNNNNNNTATATATATATATATATATATATATATATATATATATATATATATATACAATACAACACATCTCCCCTTCACTTCTAAGAACATGCACATTACAAGACATATGCACAGACTAGGTATTTACAACTATCCCAGAGATTTGCTTCCAGATAGGCCCAGACGAGATTCTCCTGTAGGCTAGACGTCTCGGACACGCTCTCTACCTGAAACGACAAACAATAACAAACTGAATGAGCAAAAAGCCCAGTGAGTGACTATAACTATTCACTATCACTAACAAACATGAGCTAGCTTATCCATTAGTAATCATTATGTATCACATTTCAGAGAGCTATTAAGGTTCTCCTTTCAATTTACACATATAAATGTCAAATTCTCATGTCATACAAATCTGCAACTATCCAGTGCCTTCACATTCTGTCCCTCAGCACTTATTTGATTATGTTTACATTACCATGTGCCTTCACATGAAGTCCCTCAGCACTGGTAACCAATTCTATCTTCGCTCAAGTGCCTTCACTCATAATCCCTCAGCACGAGCTAGTACGTGATGGATTACTACATGCTTTCACTCATAGTCCCTCAGCATTGTAATCCATTCCTCAAAGCTATTCAAGTGCTTTCACACGAAGTCCCTCAGCACTTAACTTCATGCTCACTTATGCATAGGCTTTCACCATAAGGTCCCTCAGCCATTATTATATTTAAACATTAGCATTGGTACCCTTTTAACTTGCTAACACATCACATTCACAATGAATACTACAAAGGATCACATTTCCTCATAAATTAAGCATACTAAGTTTATCACAAGATATAATAAATGGTCACTCACGATTGGTCTCGGCTCTAAGTGGATTATAAGCCTCCCCGAGCTCTTCCTGGCCTGAAAATACATATTTCTCATGTTTAGTTTTCATATTCTCCCTTTTTCTTTAACACACAATAATAGCATTATTCTTTAGACAATTAAAAGCTGCCAGTGATATTCATCACATACTACTGTACTAGCGACACTGAGTTGGATGTAACTAGCGATACTACCTGAGGAGCGACACCCAGCGATACTCTAGCGAGAATTGTGAGACGCAAAGCCCCTCTTGCGTTACAGCGATACTTGCTTCGCTGCCCTGTCTCTCGCTCTCTCAGCGATACTTCTGCTATAACAGAACCACTTTCTTCTTCCTTTCTTCTTCCTTCTTCAACCTGCTAAACATCACATTTTGATCAATTCCAGAACTTACTTCCTTTTATAAACTTGTTAAGATGTAAGTCCTTCATCTTACCTCTAGATTTCAGAAAGAACATCCTCCCTGTTTAGGATATAACCTTCAATAACTCTGAGTTACCCCTAATCGTCCGGCAGATTCAGCGTTAATCTCTTCTATCTGAATTTGACACACATTAATACAATTTTCAGCTCAAGCATCCTTCATGAATCTTGCTAAAAAATCGAGTTAACTTACTAACCTCAAAAGTTCCAGCCCTAACCACTGTCTCTTCAGTTTGTTCTTCCTCCAAAACCGAACGTTACTCAGAGAGAGTTACACACCAGCTGAGTCCTCTGCCCAACTCAAGTTTCCTCCACGGTTACGATGAGATTTTCACTCCAAAACAGCATGAACATCTTCTTCTACCTCCTTCTGATGTTTAGCTTTAGAATGGACTCAACTCGAGCTCTGAAATGTAATCAGAACNNNNNNNNNNTATATATATATATATATATATATATATATATATATATATATATATATACAATACAACACATCTCCCCTTCACTTCTAAGAACATGCACATTACAAGACATATGCACAGACTAGGTATTTACAACTATCCCAGAGATTTGCTTCCAGATAGGCCCAGACGAGATTCTCCTGTAGGCTAGACGTCTCGGACACGCTCTCTACCTGAAACGACAAACAATAACAAACTGAATGAGCAAAAAGCCCAGTGAGTGACTATAACTATTCACTATCACTAACAAACATGAGCTAGCTTATCCATTAGTAATCATTATGTATCACATTTCAGAGAGCTATTAAGGTTCTCCTTTCAATTTACACATATAAATGTCAAATTCTCATGTCATACAAATCTGCAACTATCCAGTGCCTTCACATTCTGTCCCTCAGCACTTATTTGATTATGTTTACATTACCATGTGCCTTCACATGAAGTCCCTCAGCACTGGTAACCAATTCTATCTTCGCTCAAGTGCCTTCACTCATAATCCCTCAGCACGAGCTAGTACGTGATGGATTACTACATGCTTTCACTCATAGTCCCTCAGCATTGTAATCCATTCCTCAAAGCTATTCAAGTGCTTTCACACGAAGTCCCTCAGCACTTAACTTCATGCTCACTTATGCATAGGCTTTCACCATAAGGTCCCTCAGCCATTATTATATTTAAACATTAGCATTGGTACCCTTTTAACTTGCTAACACATCACATTCACAATGAATACTACAAAGGATCACATTTCCTCATAAATTAAGCATACTAAGTTTATCACAAGATATAATAAATGGTCACTCACGATTGGTCTCGGCTCTAAGTGGATTATAAGCCTCCCCGAGCTCTTCCTGGCCTGAAAATACATATTTCTCATGTTTAGTTTTCATATTCTCCCTTTTTCTTTAACACACAATAATAGCATTATTCTTTAGACAATTAAAAGCTGCCAGTGATATTCATCACATACTACTGTACTAGCGACACTGAGTTGGATGTAACTAGCGATACTACCTGAGGAGCGACACCCAGCGATACTCTAGCGAGAATTGTGAGACGCAAAGCCCCTCTTGCGTTACAGCGATACTTGCTTCGCTGCCCTGTCTCTCGCTCTCTCAGCGATACTTCTGCTATAACAGAACCACTTTCTTCTTCCTTTCTTCTTCCTTCTTCAACCTGCTAAACATCACATTTTGATCAATTCCAGAACTTACTTCCTTTTATAAACTTGTTAAGATGTAAGTCCTTCATCTTACCTCTAGATTTCAGAAAGAACATCCTCCCTGTTTAGGATATAACCTTCAATAACTCTGAGTTACCCCTAATCGTCCGGCAGATTCAGCGTTAATCTCTTCTATCTGAATTTGACACACATTAATACAATTTTCAGCTCAAGCATCCTTCATGAATCTTGCTAAAAAATCGAGTTAACTTACTAACCTCAAAAGTTCCAGCCCTAACCACTGTCTCTTCAGTTTGTTCTTCCTCCAAAACCGAACGTTACTCAGAGAGAGTTACACACCAGCTGAGTCCTCTGCCCAACTCAAGTTTCCTCCACGGTTACGATGAGATTTTCACTCCAAAACAGCATGAACATCTTCTTCTACCTCCTTCTGATGTTTAGCTTTAGAATGGACTCAACTCGAGCTCTGAAATGTAATCAGAACAATTGAATTCTCAATCCACTTATATATATACCACCGACTTAATCTCCATTTCAACACTACACTATACTACAATCTGTTCGACGCATACCTTCTATATTTAGCTTCAACAACACACAGCCTCTAATGGTGTTGCTTTTCAAAATTCTCCCGCCAGATGGTTAACAAACGCATTACTCTCTCTCGGCCAACCTTCTTTGTCCAACGCGTACTTACTTTCGACGCATGGTAACGTTCACCGCATAATGGCCTCATCGCAAATCAGCTCTCAACTCCTTGTGGCTATTAACTTCCAACGCCCCGCTGCCTTCAATGCGTTTGTCGCAAGATAATCTTCAGTACAAGGTGGTTCTCCACGCCTTATGTCCTCAACGCGTCGTGGCTTCAGCGCCTAACAGTCTTCTCTCACCTTTGCGTTTACCCTAAACTGTTTCCCTCAAAGCATGTTGCCACCAACGCATAGCTGATACTTAGTCATTTTTTTCCGCCCCGATCACAATCCAGCCAACTACTCCTACCCAAGCGTCCATCTCTTGGCCCCTTTCTTACCTTGCGTTCTCACAAAATTAAGTACGGGGCTTACACTATGCGCTACCTAGCCCTGACCATGCGTCCAACATGGTCTGTTACCTCTTTTCTTCATAAATTCTTCAACGCATCGTTTATTAAAAAGTAGGGTGTGACAGAAGAAGTACCACAAGTACAAGATCCTAATATGGCTATTCTTCAGGCCATTCAAGGCATGATGGAAATGATGATAGAAGATAGGCAAGAACGAAGGGCACAACAACAAAGAGAAGAACGAGCCTTGCAAGAAGTTGAAGGAAATTTTGATCTAATATGA

mRNA sequence

ATGTTGCGCTTATCATTTCGTATCAGAGCATTTGGTCATCATCCTTGGTCGGCTCTAGAAGGTGTGACAGAAGAAGTACCACAAGTACAAGATCCTAATATGGCTATTCTTCAGGCCATTCAAGGCATGATGGAAATGATGATAGAAGATAGGCAAGAACGAAGGGCACAACAACAAAGAGAAGAACGAGCCTTGCAAGAAGTTGAAGGAAATTTTGATCTAATATGA

Coding sequence (CDS)

ATGTTGCGCTTATCATTTCGTATCAGAGCATTTGGTCATCATCCTTGGTCGGCTCTAGAAGGTGTGACAGAAGAAGTACCACAAGTACAAGATCCTAATATGGCTATTCTTCAGGCCATTCAAGGCATGATGGAAATGATGATAGAAGATAGGCAAGAACGAAGGGCACAACAACAAAGAGAAGAACGAGCCTTGCAAGAAGTTGAAGGAAATTTTGATCTAATATGA

Protein sequence

MLRLSFRIRAFGHHPWSALEGVTEEVPQVQDPNMAILQAIQGMMEMMIEDRQERRAQQQREERALQEVEGNFDLI
Homology
[Close]
BLAST of CaUC06G116680 vs. NCBI nr
Match: KAA0051908.1 (putative gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 2.4e-09
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 24 EEVPQVQDPNMAILQAIQGMMEMMIEDRQERRAQQQREERALQEVEGNFDL 75
          EEVP+V DPN+AILQAIQGM+E+M E+RQERRAQQQRE R  QE EG FDL
Sbjct: 6  EEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDL 56

[Close]
BLAST of CaUC06G116680 vs. NCBI nr
Match: TYK22420.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 2.4e-09
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 24 EEVPQVQDPNMAILQAIQGMMEMMIEDRQERRAQQQREERALQEVEGNFDL 75
          EEVP+V DPN+AILQAIQGM+E+M E+RQERRAQQQRE R  QE EG FDL
Sbjct: 6  EEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDL 56

[Close]
BLAST of CaUC06G116680 vs. NCBI nr
Match: TYK26105.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 2.4e-09
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 24 EEVPQVQDPNMAILQAIQGMMEMMIEDRQERRAQQQREERALQEVEGNFDL 75
          EEVP+V DPN+AILQAIQGM+E+M E+RQERRAQQQRE R  QE EG FDL
Sbjct: 6  EEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDL 56

[Close]
BLAST of CaUC06G116680 vs. NCBI nr
Match: TYK02449.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 2.4e-09
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 24 EEVPQVQDPNMAILQAIQGMMEMMIEDRQERRAQQQREERALQEVEGNFDL 75
          EEVP+V DPN+AILQAIQGM+E+M E+RQERRAQQQRE R  QE EG FDL
Sbjct: 6  EEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDL 56

[Close]
BLAST of CaUC06G116680 vs. NCBI nr
Match: KAA0067528.1 (uncharacterized protein E6C27_scaffold50G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 2.4e-09
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 24 EEVPQVQDPNMAILQAIQGMMEMMIEDRQERRAQQQREERALQEVEGNFDL 75
          EEVP+V DPN+AILQAIQGM+E+M E+RQERRAQQQRE R  QE EG FDL
Sbjct: 6  EEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDL 56

[Close]
BLAST of CaUC06G116680 vs. ExPASy TrEMBL
Match: A0A5A7VII0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50G00510 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 24 EEVPQVQDPNMAILQAIQGMMEMMIEDRQERRAQQQREERALQEVEGNFDL 75
          EEVP+V DPN+AILQAIQGM+E+M E+RQERRAQQQRE R  QE EG FDL
Sbjct: 6  EEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDL 56

[Close]
BLAST of CaUC06G116680 vs. ExPASy TrEMBL
Match: A0A5D3DDM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00010 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 24 EEVPQVQDPNMAILQAIQGMMEMMIEDRQERRAQQQREERALQEVEGNFDL 75
          EEVP+V DPN+AILQAIQGM+E+M E+RQERRAQQQRE R  QE EG FDL
Sbjct: 6  EEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRLFQEDEGMFDL 56

[Close]
BLAST of CaUC06G116680 vs. ExPASy TrEMBL
Match: A0A5D3DRJ1 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 24 EEVPQVQDPNMAILQAIQGMMEMMIEDRQERRAQQQREERALQEVEGNFDL 75
          EEVP+V DPN+AILQAIQGM+E+M E+RQERRAQQQRE R  QE EG FDL
Sbjct: 6  EEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDL 56

[Close]
BLAST of CaUC06G116680 vs. ExPASy TrEMBL
Match: A0A5D3C3D3 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001490 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 24 EEVPQVQDPNMAILQAIQGMMEMMIEDRQERRAQQQREERALQEVEGNFDL 75
          EEVP+V DPN+AILQAIQGM+E+M E+RQERRAQQQRE R  QE EG FDL
Sbjct: 6  EEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDL 56

[Close]
BLAST of CaUC06G116680 vs. ExPASy TrEMBL
Match: A0A5A7U9D0 (Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003610 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 24 EEVPQVQDPNMAILQAIQGMMEMMIEDRQERRAQQQREERALQEVEGNFDL 75
          EEVP+V DPN+AILQAIQGM+E+M E+RQERRAQQQRE R  QE EG FDL
Sbjct: 6  EEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDL 56

The following BLAST results are available for this feature:
BLAST of CaUC06G116680 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051908.12.4e-0976.47putative gag protein [Cucumis melo var. makuwa][more]
TYK22420.12.4e-0976.47Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
TYK26105.12.4e-0976.47F15O4.13 [Cucumis melo var. makuwa][more]
TYK02449.12.4e-0976.47F15O4.13 [Cucumis melo var. makuwa][more]
KAA0067528.12.4e-0976.47uncharacterized protein E6C27_scaffold50G00510 [Cucumis melo var. makuwa][more]
BLAST of CaUC06G116680 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G116680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VII01.2e-0976.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DDM51.2e-0976.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DRJ11.2e-0976.47F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 ... [more]
A0A5D3C3D31.2e-0976.47F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001490 PE=4... [more]
A0A5A7U9D01.2e-0976.47Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G... [more]
BLAST of CaUC06G116680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 48..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G116680.1CaUC06G116680.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding