CaUC06G116060 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G116060
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCiama_Chr06: 15595680 .. 15596934 (-)
RNA-Seq ExpressionCaUC06G116060
SyntenyCaUC06G116060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTTTTGCAGAAAATTTGTTCGGCCTTGGTTGCTGTAATAATTCCCAAAAACAAAGCAGTAGACCCAAAATGTAGAAAAAGAAGGTCTATAGATTTGATTTTGTTAACGTAATTTCAGGGAATATAATCCTAAAATTAATTGGGGAATAATCCCACTCATCCGTAGATTCGGTTCGACAACCCACTCACCCGTTCACTCGTCTCACAGCTTTCGTTCTTCAGCAATAAACTCTCGCCTAGATCCGAATTGACTCGCCCAGATCTAACTTGTCTCCTGTTCTCCATCGTTCCTAGATCCAAATCATCTCGCCTAGATCCGACTCGTCTCCTATTCTTAGTTGTTCGCAGATCCGAATCATATCGTCGTTGCTCCACTAGATCTAACTTGTCGTTCCCAGATTCGACTCGTCTTGTACGTTGCTCCACCAGATTTGACTCGGCTCGTATCTCTGTTGCTCCGCCTACCTTCTATTTGAAGTCCGACAACTTCAACTGCTCAAATCTAACATTGTACAGGTCAGTGCGTTCATCGCCCATTCTCCTCACTAATCTATGCTTCACTATTTTAATTCTAGTATGATCAAGTTTTCTCCCTTTCTTATTAATTCAGTGGAGAAAATGATGTATTGCGCCCCATTAGCACTATACTTGATAGCACAAATTACATCACCTAGGCCCATCAAATGAGAAGTTTTTTTATTTGTCGCAAATTATGGCGAATTGTCATAGGAGATATCACTAAACAGATAAAAAATACGCCTAAAAAGGATGACAGCAGTAGTGATACCTCCAAGCTTATAGTTGATGATGCTGGTTAAGACACTATTAAAGAAGATGCTAAGTTTATTGAATGCCTAGAGGATTGGGATAGTAAAAATCATCAAATAATAACTTGGTTGGGTAACACCTCTATTCCTGCCATACATACTCAATTTGATGCATTTGACTCTGCTAAAAAACTTTGGGATATTCTAGCTACATGCTTTCGATCTATTGGTCTTGCTCTTTACTATCAGTTACATGTCACTCTTGTTAGTCTTAATTAAGAAGTTAGGTAGTCTGTGAATGAATTCTTAACTACTCTTCAGCCATCTCAACATAGTTGGACCAAGCTAAAATCAGTCATGATCTTTTATGTCTCATCAAAGTTCTCATGGGACTTTGTCCAGAGTATGAATCAGTCCATGCTGCCTTACTATATCGTAATCCTCTACCATCTCTTGATGCAACAATTCAGGAAATTCTGTTTGA

mRNA sequence

ATGTGTTTTTGCAGAAAATTTGTTCGGCCTTGGTTGCTGGAATATAATCCTAAAATTAATTGGGGAATAATCCCACTCATCCGTAGATTCGGTTCGACAACCCACTCACCCGTTCACTCATCCAAATCATCTCGCCTAGATCCGACTCGTCTCCTATTCTTAGTTGTTCGCAGATCCGAATCATATCGTCGTTGCTCCACTAGATCTAACTTGTCGTTCCCAGATTCGACTCGTCTTGTACGTTGCTCCACCAGATTTGACTCGGCTCGTATCTCTGTTGCTCCGCCTACCTTCTATTTGAAGTCCGACAACTTCAACTGCTCAAATCTAACATTGTACAGTGGAGAAAATGATATAAAAAATACGCCTAAAAAGGATGACAGCAAGGATTGGGATAGTAAAAATCATCAAATAATAACTTGGTTGGGTAACACCTCTATTCCTGCCATACATACTCAATTTGATGCATTTGACTCTGCTAAAAAACTTTGGGATATTCTAGCTACATGCTTTCGATCTATTGGTCTTGCTCTTTACTATCAGTTACATGTCACTCTTCCATCTCAACATAGTTGGACCAAGCTAAAATCAGTCATGATCTTTTATGTCTCATCAAAGTTCTCATGGGACTTTGTCCAGAGAAATTCTGTTTGA

Coding sequence (CDS)

ATGTGTTTTTGCAGAAAATTTGTTCGGCCTTGGTTGCTGGAATATAATCCTAAAATTAATTGGGGAATAATCCCACTCATCCGTAGATTCGGTTCGACAACCCACTCACCCGTTCACTCATCCAAATCATCTCGCCTAGATCCGACTCGTCTCCTATTCTTAGTTGTTCGCAGATCCGAATCATATCGTCGTTGCTCCACTAGATCTAACTTGTCGTTCCCAGATTCGACTCGTCTTGTACGTTGCTCCACCAGATTTGACTCGGCTCGTATCTCTGTTGCTCCGCCTACCTTCTATTTGAAGTCCGACAACTTCAACTGCTCAAATCTAACATTGTACAGTGGAGAAAATGATATAAAAAATACGCCTAAAAAGGATGACAGCAAGGATTGGGATAGTAAAAATCATCAAATAATAACTTGGTTGGGTAACACCTCTATTCCTGCCATACATACTCAATTTGATGCATTTGACTCTGCTAAAAAACTTTGGGATATTCTAGCTACATGCTTTCGATCTATTGGTCTTGCTCTTTACTATCAGTTACATGTCACTCTTCCATCTCAACATAGTTGGACCAAGCTAAAATCAGTCATGATCTTTTATGTCTCATCAAAGTTCTCATGGGACTTTGTCCAGAGAAATTCTGTTTGA

Protein sequence

MCFCRKFVRPWLLEYNPKINWGIIPLIRRFGSTTHSPVHSSKSSRLDPTRLLFLVVRRSESYRRCSTRSNLSFPDSTRLVRCSTRFDSARISVAPPTFYLKSDNFNCSNLTLYSGENDIKNTPKKDDSKDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWDILATCFRSIGLALYYQLHVTLPSQHSWTKLKSVMIFYVSSKFSWDFVQRNSV
Homology
[Close]
BLAST of CaUC06G116060 vs. NCBI nr
Match: KAA0058316.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-20
Identity = 54/73 (73.97%), Postives = 58/73 (79.45%), Query Frame = 0 

Query: 116 ENDIKNTPKKDDSKDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWDILATCFRSIG 175
           E   +N    +  +DWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWD L T F+SIG
Sbjct: 53  ETSAENIQYIEKLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWDFLYTRFQSIG 112

Query: 176 LALYYQLHVTLPS 189
           LA YYQLH TL S
Sbjct: 113 LAHYYQLHSTLVS 125

[Close]
BLAST of CaUC06G116060 vs. NCBI nr
Match: TYK03354.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 3.1e-20
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 129 KDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWDILATCFRSIGLALYYQLHVTLPS 188
           +DWDSKNHQIITWLGNTSIPAIHTQFDAFDSAK+LWD L T F+SIGLA YYQLH TL S
Sbjct: 66  EDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLHSTLVS 125

[Close]
BLAST of CaUC06G116060 vs. NCBI nr
Match: KAA0043149.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 3.1e-20
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 129 KDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWDILATCFRSIGLALYYQLHVTLPS 188
           +DWDSKNHQIITWLGNTSIPAIHTQFDAFDSAK+LWD L T F+SIGLA YYQLH TL S
Sbjct: 66  EDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLHSTLVS 125

[Close]
BLAST of CaUC06G116060 vs. NCBI nr
Match: KAA0036615.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 3.1e-20
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 129 KDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWDILATCFRSIGLALYYQLHVTLPS 188
           +DWDSKNHQIITWLGNTSIPAIHTQFDAFDSAK+LWD L T F+SIGLA YYQLH TL S
Sbjct: 66  EDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLHSTLVS 125

[Close]
BLAST of CaUC06G116060 vs. NCBI nr
Match: XP_008445037.1 (PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 3.1e-20
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 129 KDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWDILATCFRSIGLALYYQLHVTLPS 188
           +DWDSKNHQIITWLGNTSIPAIHTQFDAFDSAK+LWD L T F+SIGLA YYQLH TL S
Sbjct: 66  EDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLHSTLVS 125

[Close]
BLAST of CaUC06G116060 vs. ExPASy TrEMBL
Match: A0A5A7UVX4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006520 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.6e-21
Identity = 54/73 (73.97%), Postives = 58/73 (79.45%), Query Frame = 0 

Query: 116 ENDIKNTPKKDDSKDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWDILATCFRSIG 175
           E   +N    +  +DWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWD L T F+SIG
Sbjct: 53  ETSAENIQYIEKLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWDFLYTRFQSIG 112

Query: 176 LALYYQLHVTLPS 189
           LA YYQLH TL S
Sbjct: 113 LAHYYQLHSTLVS 125

[Close]
BLAST of CaUC06G116060 vs. ExPASy TrEMBL
Match: A0A5D3DG18 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00850 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 129 KDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWDILATCFRSIGLALYYQLHVTLPS 188
           +DWDSKNHQIITWLGNTSIPAIHTQFDAFDSAK+LWD L T F+SIGLA YYQLH TL S
Sbjct: 66  EDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLHSTLVS 125

[Close]
BLAST of CaUC06G116060 vs. ExPASy TrEMBL
Match: A0A5A7SZ66 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00840 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 129 KDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWDILATCFRSIGLALYYQLHVTLPS 188
           +DWDSKNHQIITWLGNTSIPAIHTQFDAFDSAK+LWD L T F+SIGLA YYQLH TL S
Sbjct: 66  EDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLHSTLVS 125

[Close]
BLAST of CaUC06G116060 vs. ExPASy TrEMBL
Match: A0A5D3BW47 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2392G00120 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 129 KDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWDILATCFRSIGLALYYQLHVTLPS 188
           +DWDSKNHQIITWLGNTSIPAIHTQFDAFDSAK+LWD L T F+SIGLA YYQLH TL S
Sbjct: 66  EDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLHSTLVS 125

[Close]
BLAST of CaUC06G116060 vs. ExPASy TrEMBL
Match: A0A5A7T587 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001390 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 129 KDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKKLWDILATCFRSIGLALYYQLHVTLPS 188
           +DWDSKNHQIITWLGNTSIPAIHTQFDAFDSAK+LWD L T F+SIGLA YYQLH TL S
Sbjct: 66  EDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLHSTLVS 125

The following BLAST results are available for this feature:
BLAST of CaUC06G116060 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0058316.11.4e-2073.97Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK03354.13.1e-2085.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0043149.13.1e-2085.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0036615.13.1e-2085.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
XP_008445037.13.1e-2085.00PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo][more]
BLAST of CaUC06G116060 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G116060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UVX46.6e-2173.97Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3DG181.5e-2085.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7SZ661.5e-2085.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3BW471.5e-2085.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7T5871.5e-2085.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
BLAST of CaUC06G116060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G116060.1CaUC06G116060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding