CaUC06G115710 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTTGTACAGGATAGGGAAGACATGTCGCCGGAGGAAGGGGAGCCGACGGAAATGCTAAAGGATGTTGAACAAGGGAAGGATCTTGAAAACACAGCAACCAAGATGGCAAATTTATCTCTGAGTTCCATGGTTGGGTTTCACTTACCAAAAACAGTGAAAGTTAAAGGAAGTATAAGGGGGTGCGAAATCGTGGTGTTGATTGACGGAGGGGCAACTCACAATTTTATAGTTGAAGAGCTGGTCATGTAGCTCCAATTAACGGTGTCTCCTAAGGAAGGTTATGGGGTTGTCTTAGGCACCAGGGGATTAGTTTGGGCAGCTGGTATTTGCAAAGGTGTGTTACTCTCCATCTCTGATCTTTCCATAATTCATGATTTTTTGCTGCTGCCATTAGGCCTCGCTGATGTGATTTCAGGGGTCGCATGGCTAGAGAGACTTGGAAAAATTGAGTTTGATTACCGATCCTCTGTCATGAATTTTTGTGTGGGTGATTGGTGGGTGGAATTATGGGGAGACCGGAGTTTAGTGAGATCACAGGTTTCGCTGCAATCAATATGA ATGTTTGTACAGGATAGGGAAGACATGTCGCCGGAGGAAGGGGAGCCGACGGAAATGCTAAAGGATGTTGAACAAGGGAAGGATCTTGAAAACACAGCAACCAAGATGGCAAATTTATCTCTGAGTTCCATGCTCCAATTAACGGTGTCTCCTAAGGAAGGTTATGGGGTTGTCTTAGGCACCAGGGGATTAGTTTGGGCAGCTGGTATTTGCAAAGGTGTGTTACTCTCCATCTCTGATCTTTCCATAATTCATGATTTTTTGCTGCTGCCATTAGGCCTCGCTGATGTGATTTCAGGGGTCGCATGGCTAGAGAGACTTGGAAAAATTGAGTTTGATTACCGATCCTCTGTCATGAATTTTTGTGTGGGTGATTGGTGGGTGGAATTATGGGGAGACCGGAGTTTAGTGAGATCACAGGTTTCGCTGCAATCAATATGA ATGTTTGTACAGGATAGGGAAGACATGTCGCCGGAGGAAGGGGAGCCGACGGAAATGCTAAAGGATGTTGAACAAGGGAAGGATCTTGAAAACACAGCAACCAAGATGGCAAATTTATCTCTGAGTTCCATGCTCCAATTAACGGTGTCTCCTAAGGAAGGTTATGGGGTTGTCTTAGGCACCAGGGGATTAGTTTGGGCAGCTGGTATTTGCAAAGGTGTGTTACTCTCCATCTCTGATCTTTCCATAATTCATGATTTTTTGCTGCTGCCATTAGGCCTCGCTGATGTGATTTCAGGGGTCGCATGGCTAGAGAGACTTGGAAAAATTGAGTTTGATTACCGATCCTCTGTCATGAATTTTTGTGTGGGTGATTGGTGGGTGGAATTATGGGGAGACCGGAGTTTAGTGAGATCACAGGTTTCGCTGCAATCAATATGA MFVQDREDMSPEEGEPTEMLKDVEQGKDLENTATKMANLSLSSMLQLTVSPKEGYGVVLGTRGLVWAAGICKGVLLSISDLSIIHDFLLLPLGLADVISGVAWLERLGKIEFDYRSSVMNFCVGDWWVELWGDRSLVRSQVSLQSI Homology
BLAST of CaUC06G115710 vs. NCBI nr
Match: XP_031737572.1 (uncharacterized protein LOC116402461 [Cucumis sativus]) HSP 1 Score: 121.3 bits (303), Expect = 6.8e-24 Identity = 62/102 (60.78%), Postives = 76/102 (74.51%), Query Frame = 0
BLAST of CaUC06G115710 vs. NCBI nr
Match: XP_038904464.1 (uncharacterized protein LOC120090832 [Benincasa hispida]) HSP 1 Score: 103.6 bits (257), Expect = 1.5e-18 Identity = 50/106 (47.17%), Postives = 74/106 (69.81%), Query Frame = 0
BLAST of CaUC06G115710 vs. NCBI nr
Match: XP_038907170.1 (uncharacterized protein LOC120092972 [Benincasa hispida]) HSP 1 Score: 102.8 bits (255), Expect = 2.5e-18 Identity = 54/106 (50.94%), Postives = 74/106 (69.81%), Query Frame = 0
BLAST of CaUC06G115710 vs. NCBI nr
Match: KAA0039528.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15281.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 100.5 bits (249), Expect = 1.2e-17 Identity = 68/181 (37.57%), Postives = 93/181 (51.38%), Query Frame = 0
BLAST of CaUC06G115710 vs. NCBI nr
Match: XP_024030016.1 (uncharacterized protein LOC112094120 [Morus notabilis]) HSP 1 Score: 92.0 bits (227), Expect = 4.4e-15 Identity = 53/135 (39.26%), Postives = 83/135 (61.48%), Query Frame = 0
BLAST of CaUC06G115710 vs. ExPASy TrEMBL
Match: A0A5D3CTU6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00600 PE=4 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 6.0e-18 Identity = 68/181 (37.57%), Postives = 93/181 (51.38%), Query Frame = 0
BLAST of CaUC06G115710 vs. ExPASy TrEMBL
Match: A0A803PSM5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14 Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 0
BLAST of CaUC06G115710 vs. ExPASy TrEMBL
Match: A0A803PBL9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 5.3e-14 Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 0
BLAST of CaUC06G115710 vs. ExPASy TrEMBL
Match: A0A5D3BD16 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001350 PE=4 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 5.8e-13 Identity = 42/107 (39.25%), Postives = 66/107 (61.68%), Query Frame = 0
BLAST of CaUC06G115710 vs. ExPASy TrEMBL
Match: A0A5D3CEX8 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00690 PE=4 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 5.8e-13 Identity = 42/107 (39.25%), Postives = 66/107 (61.68%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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