CaUC06G115710 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G115710
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionTy3-gypsy retrotransposon protein
LocationCiama_Chr06: 14100354 .. 14100914 (+)
RNA-Seq ExpressionCaUC06G115710
SyntenyCaUC06G115710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGTACAGGATAGGGAAGACATGTCGCCGGAGGAAGGGGAGCCGACGGAAATGCTAAAGGATGTTGAACAAGGGAAGGATCTTGAAAACACAGCAACCAAGATGGCAAATTTATCTCTGAGTTCCATGGTTGGGTTTCACTTACCAAAAACAGTGAAAGTTAAAGGAAGTATAAGGGGGTGCGAAATCGTGGTGTTGATTGACGGAGGGGCAACTCACAATTTTATAGTTGAAGAGCTGGTCATGTAGCTCCAATTAACGGTGTCTCCTAAGGAAGGTTATGGGGTTGTCTTAGGCACCAGGGGATTAGTTTGGGCAGCTGGTATTTGCAAAGGTGTGTTACTCTCCATCTCTGATCTTTCCATAATTCATGATTTTTTGCTGCTGCCATTAGGCCTCGCTGATGTGATTTCAGGGGTCGCATGGCTAGAGAGACTTGGAAAAATTGAGTTTGATTACCGATCCTCTGTCATGAATTTTTGTGTGGGTGATTGGTGGGTGGAATTATGGGGAGACCGGAGTTTAGTGAGATCACAGGTTTCGCTGCAATCAATATGA

mRNA sequence

ATGTTTGTACAGGATAGGGAAGACATGTCGCCGGAGGAAGGGGAGCCGACGGAAATGCTAAAGGATGTTGAACAAGGGAAGGATCTTGAAAACACAGCAACCAAGATGGCAAATTTATCTCTGAGTTCCATGCTCCAATTAACGGTGTCTCCTAAGGAAGGTTATGGGGTTGTCTTAGGCACCAGGGGATTAGTTTGGGCAGCTGGTATTTGCAAAGGTGTGTTACTCTCCATCTCTGATCTTTCCATAATTCATGATTTTTTGCTGCTGCCATTAGGCCTCGCTGATGTGATTTCAGGGGTCGCATGGCTAGAGAGACTTGGAAAAATTGAGTTTGATTACCGATCCTCTGTCATGAATTTTTGTGTGGGTGATTGGTGGGTGGAATTATGGGGAGACCGGAGTTTAGTGAGATCACAGGTTTCGCTGCAATCAATATGA

Coding sequence (CDS)

ATGTTTGTACAGGATAGGGAAGACATGTCGCCGGAGGAAGGGGAGCCGACGGAAATGCTAAAGGATGTTGAACAAGGGAAGGATCTTGAAAACACAGCAACCAAGATGGCAAATTTATCTCTGAGTTCCATGCTCCAATTAACGGTGTCTCCTAAGGAAGGTTATGGGGTTGTCTTAGGCACCAGGGGATTAGTTTGGGCAGCTGGTATTTGCAAAGGTGTGTTACTCTCCATCTCTGATCTTTCCATAATTCATGATTTTTTGCTGCTGCCATTAGGCCTCGCTGATGTGATTTCAGGGGTCGCATGGCTAGAGAGACTTGGAAAAATTGAGTTTGATTACCGATCCTCTGTCATGAATTTTTGTGTGGGTGATTGGTGGGTGGAATTATGGGGAGACCGGAGTTTAGTGAGATCACAGGTTTCGCTGCAATCAATATGA

Protein sequence

MFVQDREDMSPEEGEPTEMLKDVEQGKDLENTATKMANLSLSSMLQLTVSPKEGYGVVLGTRGLVWAAGICKGVLLSISDLSIIHDFLLLPLGLADVISGVAWLERLGKIEFDYRSSVMNFCVGDWWVELWGDRSLVRSQVSLQSI
Homology
BLAST of CaUC06G115710 vs. NCBI nr
Match: XP_031737572.1 (uncharacterized protein LOC116402461 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 6.8e-24
Identity = 62/102 (60.78%), Postives = 76/102 (74.51%), Query Frame = 0

Query: 45  LQLTVSPKEGYGVVLGTRGLVWAAGICKGVLLSISDLSIIHDFLLLPLGLADVISGVAWL 104
           L+++V   + YGVVLGT G+V A G+CK V L I++LSI H+FL LPLG  DVI GV WL
Sbjct: 135 LKISVETMDAYGVVLGTGGVVRATGVCKDVNLKIANLSITHNFLPLPLGSVDVILGVTWL 194

Query: 105 ERLGKIEFDYRSSVMNFCVGDWWVELWGDRSLVRSQVSLQSI 147
           E LGK+ FDY+ S M F  G+W V L GDRSLVRSQVSL+S+
Sbjct: 195 ETLGKVIFDYKLSEMEFSSGEWVVILQGDRSLVRSQVSLKSM 236

BLAST of CaUC06G115710 vs. NCBI nr
Match: XP_038904464.1 (uncharacterized protein LOC120090832 [Benincasa hispida])

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-18
Identity = 50/106 (47.17%), Postives = 74/106 (69.81%), Query Frame = 0

Query: 41  LSSMLQLTVSPKEGYGVVLGTRGLVWAAGICKGVLLSISDLSIIHDFLLLPLGLADVISG 100
           L S L+L   P   YG++LG    V   G+CKGV+L++S+L+II+D   LPLG  DV+ G
Sbjct: 464 LVSSLKLPQMPTTSYGIMLGIGTSVRTTGVCKGVILNLSNLTIINDLFPLPLGNIDVVLG 523

Query: 101 VAWLERLGKIEFDYRSSVMNFCVGDWWVELWGDRSLVRSQVSLQSI 147
           V WL  LG++E D+ +S M F +GDW V L G+R+L+++Q+SL+S+
Sbjct: 524 VQWLMTLGRVECDWGTSEMEFQIGDWQVHLKGNRNLMKAQISLKSM 569

BLAST of CaUC06G115710 vs. NCBI nr
Match: XP_038907170.1 (uncharacterized protein LOC120092972 [Benincasa hispida])

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-18
Identity = 54/106 (50.94%), Postives = 74/106 (69.81%), Query Frame = 0

Query: 41  LSSMLQLTVSPKEGYGVVLGTRGLVWAAGICKGVLLSISDLSIIHDFLLLPLGLADVISG 100
           L S L L  SP    G++LGT   V   GICKGV+L++ +L+II+DF  +PLG ADV+ G
Sbjct: 246 LVSTLNLPCSPTSSCGIMLGTGKSVRTNGICKGVVLNLPNLTIINDFFPIPLGSADVVMG 305

Query: 101 VAWLERLGKIEFDYRSSVMNFCVGDWWVELWGDRSLVRSQVSLQSI 147
           V WL  LG++E D+ +S M+F VG+  V L  DRSLV+SQ+SL+S+
Sbjct: 306 VQWLMTLGQVECDWSTSKMDFQVGERRVHLKADRSLVKSQISLKSM 351

BLAST of CaUC06G115710 vs. NCBI nr
Match: KAA0039528.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15281.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-17
Identity = 68/181 (37.57%), Postives = 93/181 (51.38%), Query Frame = 0

Query: 3   VQDREDMSPEEGEPTEMLKDVEQGKDLENTATKMANLSLSSM------------------ 62
           VQ+RED+S    E T+ + +  + K  E    ++ANLSL+S+                  
Sbjct: 37  VQEREDLS----EETDQVGEEIETKGNEEVNIEIANLSLNSLVGLSSPKTIKIKGEIRGR 96

Query: 63  ----------------------LQLTVSPKEGYGVVLGTRGLVWAAGICKGVLLSISDLS 122
                                 L++++   + YG+VLGTRG+V AAG+CK V L+I++LS
Sbjct: 97  EIVVLIDGGATHNFILKEVVKELKISIETLDAYGIVLGTRGIVRAAGVCKEVNLTIANLS 156

Query: 123 IIHDFLLLPLGLADVISGVAWLERLGKIEFDYRSSVMNFCVGDWW-----------VELW 133
           I HDFL LPLG ADVI GV WLE LGK+ F Y+ S M F +G+W            VE W
Sbjct: 157 ITHDFLPLPLGSADVILGVTWLEMLGKVIFYYKLSEMEFPLGEWMEDQGVLIELSTVEQW 213

BLAST of CaUC06G115710 vs. NCBI nr
Match: XP_024030016.1 (uncharacterized protein LOC112094120 [Morus notabilis])

HSP 1 Score: 92.0 bits (227), Expect = 4.4e-15
Identity = 53/135 (39.26%), Postives = 83/135 (61.48%), Query Frame = 0

Query: 17  TEMLKDVEQGKD----LENTAT-KMANLSLSSMLQLTVSPKEGYGVVLGTRGLVWAAGIC 76
           T  LK V +GK+    +++ AT    ++ L   ++LTV     YGVV+GT   V   G+C
Sbjct: 156 TMKLKGVLRGKEVTVLIDSGATYNFISVDLVRKMELTVDKIGDYGVVMGTGLSVKGEGVC 215

Query: 77  KGVLLSISDLSIIHDFLLLPLGLADVISGVAWLERLGKIEFDYRSSVMNFCVGDWWVELW 136
           +G+++S+ D+ I+ DFL L LG +D+I G+ WLE LG +  ++RS  M F VG+  V L 
Sbjct: 216 RGIVVSLQDIEIVEDFLPLELGSSDIILGIQWLETLGVMTVNWRSLTMKFMVGNRQVTLK 275

Query: 137 GDRSLVRSQVSLQSI 147
           GD  + R+ VSL+++
Sbjct: 276 GDPGMNRTSVSLKAL 290

BLAST of CaUC06G115710 vs. ExPASy TrEMBL
Match: A0A5D3CTU6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00600 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.0e-18
Identity = 68/181 (37.57%), Postives = 93/181 (51.38%), Query Frame = 0

Query: 3   VQDREDMSPEEGEPTEMLKDVEQGKDLENTATKMANLSLSSM------------------ 62
           VQ+RED+S    E T+ + +  + K  E    ++ANLSL+S+                  
Sbjct: 37  VQEREDLS----EETDQVGEEIETKGNEEVNIEIANLSLNSLVGLSSPKTIKIKGEIRGR 96

Query: 63  ----------------------LQLTVSPKEGYGVVLGTRGLVWAAGICKGVLLSISDLS 122
                                 L++++   + YG+VLGTRG+V AAG+CK V L+I++LS
Sbjct: 97  EIVVLIDGGATHNFILKEVVKELKISIETLDAYGIVLGTRGIVRAAGVCKEVNLTIANLS 156

Query: 123 IIHDFLLLPLGLADVISGVAWLERLGKIEFDYRSSVMNFCVGDWW-----------VELW 133
           I HDFL LPLG ADVI GV WLE LGK+ F Y+ S M F +G+W            VE W
Sbjct: 157 ITHDFLPLPLGSADVILGVTWLEMLGKVIFYYKLSEMEFPLGEWMEDQGVLIELSTVEQW 213

BLAST of CaUC06G115710 vs. ExPASy TrEMBL
Match: A0A803PSM5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 0

Query: 47  LTVSPKEGYGVVLGTRGLVWAAGICKGVLLSISDLSIIHDFLLLPLGLADVISGVAWLER 106
           + ++   GYG++LGT   V A G+C  V L +  L ++ DFL L LG ADVI GV WLE 
Sbjct: 507 IPITQTNGYGILLGTGDRVKAEGVCSQVTLELGALRVVTDFLPLELGGADVILGVKWLET 566

Query: 107 LGKIEFDYRSSVMNFCVGDWWVELWGDRSLVRSQVSLQSI 147
           LG ++ ++R+ VM F     WV L GD SL +SQ+SL+++
Sbjct: 567 LGNMQVNWRTMVMKFERDGTWVTLQGDPSLCKSQISLKAM 606

BLAST of CaUC06G115710 vs. ExPASy TrEMBL
Match: A0A803PBL9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.3e-14
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 0

Query: 49  VSPKEGYGVVLGTRGLVWAAGICKGVLLSISDLSIIHDFLLLPLGLADVISGVAWLERLG 108
           ++   GYG++LGT   V A G+C  V L + ++ ++ DFL L LG  DVI GV WLE LG
Sbjct: 310 ITQTTGYGILLGTGDRVKAEGVCSQVSLELGEICVVSDFLPLELGGVDVILGVKWLETLG 369

Query: 109 KIEFDYRSSVMNFCVGDWWVELWGDRSLVRSQVSLQSI 147
            ++ ++R+ VM F  G  WV L GD SL +S ++L+++
Sbjct: 370 NMQVNWRTMVMRFKRGGTWVTLQGDPSLCKSPITLKAM 407

BLAST of CaUC06G115710 vs. ExPASy TrEMBL
Match: A0A5D3BD16 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001350 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.8e-13
Identity = 42/107 (39.25%), Postives = 66/107 (61.68%), Query Frame = 0

Query: 38  NLSLSSMLQLTVSPKEGYGVVLGTRGLVWAAGICKGVLLSISDLSIIHDFLLLPLGLADV 97
           +L L   L+L ++    YGV++G+   V   GICKG+ + +  +SI+ DFL L LG  D+
Sbjct: 420 SLKLVENLKLPMAETTNYGVIMGSGKAVQGRGICKGITVGLPVISIVEDFLPLELGNIDM 479

Query: 98  ISGVAWLERLGKIEFDYRSSVMNFCVGDWWVELWGDRSLVRSQVSLQ 145
           + G+ WL++ G +  D+++  M F VGD  V L GD SL R ++SL+
Sbjct: 480 VLGMQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLK 526

BLAST of CaUC06G115710 vs. ExPASy TrEMBL
Match: A0A5D3CEX8 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00690 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.8e-13
Identity = 42/107 (39.25%), Postives = 66/107 (61.68%), Query Frame = 0

Query: 38  NLSLSSMLQLTVSPKEGYGVVLGTRGLVWAAGICKGVLLSISDLSIIHDFLLLPLGLADV 97
           +L L   L+L ++    YGV++G+   V   GICKG+ + +  +SI+ DFL L LG  D+
Sbjct: 420 SLKLVENLKLPMAETTNYGVIMGSGKAVQGRGICKGITVGLPVISIVEDFLPLELGNIDM 479

Query: 98  ISGVAWLERLGKIEFDYRSSVMNFCVGDWWVELWGDRSLVRSQVSLQ 145
           + G+ WL++ G +  D+++  M F VGD  V L GD SL R ++SL+
Sbjct: 480 VLGMQWLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSLTRMEISLK 526

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031737572.16.8e-2460.78uncharacterized protein LOC116402461 [Cucumis sativus][more]
XP_038904464.11.5e-1847.17uncharacterized protein LOC120090832 [Benincasa hispida][more]
XP_038907170.12.5e-1850.94uncharacterized protein LOC120092972 [Benincasa hispida][more]
KAA0039528.11.2e-1737.57ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15281.1 ty3-gyp... [more]
XP_024030016.14.4e-1539.26uncharacterized protein LOC112094120 [Morus notabilis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CTU66.0e-1837.57Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A803PSM51.8e-1445.00Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PBL95.3e-1442.86Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A5D3BD165.8e-1339.25Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3CEX85.8e-1339.25Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G115710.1CaUC06G115710.1mRNA