CaUC06G115650 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G115650
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Prefoldin chaperone subunit family protein
Location	Ciama_Chr06: 13913302 .. 13916455 (-)
RNA-Seq Expression	CaUC06G115650
Synteny	CaUC06G115650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCAACATGAATGCCCCACACAATGCGCCCTCTTCTCTTCACTCTTTCAACCATCACCCCAATCCCCAAACCAAACAAACCAATCCATTCCCAAAATGGCCGCCGACGCTGGGCTTACCATCGCGGCGTTCCCGTCGATACCCATCGAAGAACACAAACTGGAAATTACAAAACAGATGAGACGTTATGAGGTCGCCATTGCAGAGCTCAATCATCTCTCCTCTTCCAGAGTAACCCCTTCCCCGCTCTTTCTCTGCTTCTTTTTCTTCTTTCTCTAATTTGAACTAGATTTAGAACGCTGTACCGGCATTCTGTTTGAAAATTTTGTTCCAACTCTGCCTATTTTCCTTTTTCTGCCGAATATTTTGCTCGGACCAACTTTTCTATCGTATACGCTATTAACTAGGGTGCAGTCGAACTGAAATCTTCATTACATGTTAATCTAGGCTCTAAATCTTCCAATAATTGCTCAACTTTTTCTGGCTGAACTCATCTTTTGAAACACTAGACGAACTTCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTGTGTGTGTGTGTGTGTGCCCCTTTAATGGATATAAACTGCTTGATTTATTTACTCCTATTTTTTAGAAGAATGTTAGTTTGGTAGTGACTTTTGATTGCTCTATTTTTCATTTTATTGAGATCTAGTAAAGGATTATAATTTCTCATTTTATGAAAATACATTTAAAAACATTCGTGTGGATGAATTGATATTGTTACAAGAACATGAACAGATATTGATATCAAATTCTTCCATTTCTGATAATATTAGTGGAAGCATTAATATGTTGATGAACAACACATAATATCACCTTTAGTAACTAGGTCAGTTTGTGATTATGATCATGGTTTGATTTAGTTGGATTGGAGTTGTAGTTTGGGGTCTCCTTTTTTTATGCCCTTGTATATTCTTTTATTCTGTTCAATGAAACCTTGATTTCGTACTTTAAGGGGGTGAAAAAGACATGAAGAAGATTAAAAGATGAACAGCCTCTCTCTGATACACATTCTTAATGTTGTTGTAAATTGCAGGCTGTCTTTCAGAAAAACGGAAACATATTTTTTCGCACAACTATTCAAAAAGCAACAACTTCGGAACAGAGTAAGAATATTGCTTTAACAAACTTAACTTATACATATACACCCCCATGTTTTATGTCTTCCCTCTCAATCCTATCCAATTTATATCCTCATTTTAGACATTTCCCAAAGAAGGTTTTGAATATCCATATGAGGAAGAAATTTCTTTTTTGAAATATATTGTGGAAGTGTGATTTCAGTATTGAATAAATATCGAGAAATGTTAGATATATAGCAAAATCTCAAAGGGGTTTAGATGAAACCTTTCAAAATCCAGGGACACAAAGTAGTAACTAGAAAAATGTTGCCTTTTATCTGAGAGTTCAAATCATTTTTGAGTTTCTTGACACGTGTATGATATTTTTTCTGTTTGACCTTGGTTTCTCCTTCGACATTTATGAAATTCAAGACTTAACTATTATTGTCAATATCTACAATTAACTACTTGATCCCACCTCAACCTTTTTGATTGGTTGGTTTCTCTTTTCAGAAAAACTTGATGCGGCTAGAGCAAAGCTGGAAAGACTGAATTCTTGATTCGTACTGTCAATGAGGAAATATTCTAAACGATTTTCTAAGTGCTTCAAAAAAGTGTTTTTTGTAAGTACTTTAAAATTCATTTAAAAGTCATTGGTCTTGAATTTCTCGCTTTTTTATTTTACTCAAGAGTAAAGTCTTGATCTAGAGGTTCAAAATTCTGCTTATAAAATCTATTTGCTAAAACTTCTTTCCCTGAATATTTTGTCATTTCCTCAATGAAGGAAAGAATGTGAAAGGTGAATAGCATCTTGTTTTAATATAATTGATCATTCATTTTGCAGACAATGACGCTTCATCATGTAAGTTTGAGCTGATATGATACGAATTTTCAAATGATAGTTTGATATTTAGTGTAGGGTCCAGTGGGTTTGAACTGGCTGCTCAGTCTAGAAATCATACAAGGCTAAGCTCGTTTTATGCCTTAGCCTACACACTAATTTTTGTACATTTTTGAAGTGAGAATTCATCTAATACTACAATAAATTCTCCGATGGCCAACTAGATTGATGTTCAAATTCCGACTTTCAGGCTAGGTCGGGTTGGACTTCTGATGACATTGAGGTAGGTACATTTGTTGTTTAATTTTGTAGGTACAAATGTAAATTTGAAATTTTAACAAATGGGCTTAAGGTGAATGGGTTCCATCCATGGTGAGGGTGACCTACTTTGGAATTT

mRNA sequence

CCCCAACATGAATGCCCCACACAATGCGCCCTCTTCTCTTCACTCTTTCAACCATCACCCCAATCCCCAAACCAAACAAACCAATCCATTCCCAAAATGGCCGCCGACGCTGGGCTTACCATCGCGGCGTTCCCGTCGATACCCATCGAAGAACACAAACTGGAAATTACAAAACAGATGAGACGTTATGAGGTCGCCATTGCAGAGCTCAATCATCTCTCCTCTTCCAGAGCTGTCTTTCAGAAAAACGGAAACATATTTTTTCGCACAACTATTCAAAAAGCAACAACTTCGGAACAGAAAAAACTTGATGCGGCTAGAGCAAAGCTGGAAAGACTGAATTCTTGATTCGTACTGTCAATGAGGAAATATTCTAAACGATTTTCTAAGTGCTTCAAAAAAGTGTTTTTTTGTAGGGTCCAGTGGGTTTGAACTGGCTGCTCAGTCTAGAAATCATACAAGGCTAAGCTCGTTTTATGCCTTAGCCTACACACTAATTTTTGTACATTTTTGAAGTGAATAAATTCTCCGATGGCCAACTAGATTGATGTTCAAATTCCGACTTTCAGGCTAGGTCGGGTTGGACTTCTGATGACATTGAGGTAGGTACATTTGTTGTTTAATTTTGTAGGTACAAATGTAAATTTGAAATTTTAACAAATGGGCTTAAGGTGAATGGGTTCCATCCATGGTGAGGGTGACCTACTTTGGAATTT

Coding sequence (CDS)

CCCCAACATGAATGCCCCACACAATGCGCCCTCTTCTCTTCACTCTTTCAACCATCACCCCAATCCCCAAACCAAACAAACCAATCCATTCCCAAAATGGCCGCCGACGCTGGGCTTACCATCGCGGCGTTCCCGTCGATACCCATCGAAGAACACAAACTGGAAATTACAAAACAGATGAGACGTTATGAGGTCGCCATTGCAGAGCTCAATCATCTCTCCTCTTCCAGAGCTGTCTTTCAGAAAAACGGAAACATATTTTTTCGCACAACTATTCAAAAAGCAACAACTTCGGAACAGAAAAAACTTGATGCGGCTAGAGCAAAGCTGGAAAGACTGAATTCTTGA

Protein sequence

PQHECPTQCALFSSLFQPSPQSPNQTNQSIPKMAADAGLTIAAFPSIPIEEHKLEITKQMRRYEVAIAELNHLSSSRAVFQKNGNIFFRTTIQKATTSEQKKLDAARAKLERLNS

Homology

[Close]

BLAST of CaUC06G115650 vs. NCBI nr
Match: XP_011649062.1 (uncharacterized protein LOC105434577 [Cucumis sativus] >KGN61409.1 hypothetical protein Csa_006282 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 3.0e-27
Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 33  MAADAGLTIAAFPSIPIEEHKLEITKQMRRYEVAIAELNHLSSSRAVFQKNGNIFFRTTI 92
           MAAD GL+ AA PSI +EE KLEITKQMR  EVAIAELNHLSS+RAVFQKNGN+FFRTT+
Sbjct: 1   MAADGGLSTAASPSITMEEQKLEITKQMRSLEVAIAELNHLSSTRAVFQKNGNLFFRTTV 60

Query: 93  QKATTSEQKKLDAARAKLERLNS 116
           QKATTSEQKKLDAARAKLE LNS
Sbjct: 61  QKATTSEQKKLDAARAKLESLNS 83

[Close]

BLAST of CaUC06G115650 vs. NCBI nr
Match: XP_008457178.1 (PREDICTED: uncharacterized protein LOC103496917 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 6.8e-27
Identity = 68/83 (81.93%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 33  MAADAGLTIAAFPSIPIEEHKLEITKQMRRYEVAIAELNHLSSSRAVFQKNGNIFFRTTI 92
           MAAD G + AAFPSI  EE KLEITKQMR  EVAIAELNHLSS+RAV+QKNGN+FFRTT+
Sbjct: 1   MAADGGFSTAAFPSITKEEQKLEITKQMRSLEVAIAELNHLSSTRAVYQKNGNLFFRTTV 60

Query: 93  QKATTSEQKKLDAARAKLERLNS 116
           QKATTSEQKKLDAA+A+LERLNS
Sbjct: 61  QKATTSEQKKLDAAKARLERLNS 83

[Close]

BLAST of CaUC06G115650 vs. NCBI nr
Match: XP_038875459.1 (uncharacterized protein LOC120067907 [Benincasa hispida])

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-26
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 33  MAADAGLTIAAFPSIPIEEHKLEITKQMRRYEVAIAELNHLSSSRAVFQKNGNIFFRTTI 92
           M A +G + AA PSI IEE KLEITKQ+R YEVAIAELNHLSSSRA+FQKNGNIFFRTT+
Sbjct: 1   MDAGSGFSTAASPSITIEEQKLEITKQIRSYEVAIAELNHLSSSRAIFQKNGNIFFRTTV 60

Query: 93  QKATTSEQKKLDAARAKLERLNS 116
           QKATTSEQKKLDAA AKLERLNS
Sbjct: 61  QKATTSEQKKLDAATAKLERLNS 83

[Close]

BLAST of CaUC06G115650 vs. NCBI nr
Match: KAG7026105.1 (Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-25
Identity = 71/106 (66.98%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 10  ALFSSLFQPSPQSPNQTNQSIPKMAADAGL-TIAAFPSIPIEEHKLEITKQMRRYEVAIA 69
           A+  SL+    ++       I KMA   G  T AAFPS  IEE KLEITK+MR +EV+IA
Sbjct: 600 AMQISLYPKQNKAGESRVTPIEKMATGGGFGTAAAFPSTTIEEQKLEITKEMRSHEVSIA 659

Query: 70  ELNHLSSSRAVFQKNGNIFFRTTIQKATTSEQKKLDAARAKLERLN 115
           ELNHLSS+RAVFQKNGNIFFRTT+QKATTSEQKKLDAARAKL++LN
Sbjct: 660 ELNHLSSTRAVFQKNGNIFFRTTVQKATTSEQKKLDAARAKLQKLN 705

[Close]

BLAST of CaUC06G115650 vs. NCBI nr
Match: XP_022964526.1 (uncharacterized protein LOC111464527 [Cucurbita moschata])

HSP 1 Score: 124.8 bits (312), Expect = 4.9e-25
Identity = 67/89 (75.28%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 27  NQSIPKMAADAGL-TIAAFPSIPIEEHKLEITKQMRRYEVAIAELNHLSSSRAVFQKNGN 86
           + +I KM    G  T AAFPS  IEE KLEITK+MR +EV+IAELNHLSS+RAVFQKNGN
Sbjct: 18  SDTIEKMPTGGGFGTAAAFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGN 77

Query: 87  IFFRTTIQKATTSEQKKLDAARAKLERLN 115
           IFFRTT+QKATTSEQKKLDAARAKL++LN
Sbjct: 78  IFFRTTVQKATTSEQKKLDAARAKLQKLN 106

[Close]

BLAST of CaUC06G115650 vs. ExPASy TrEMBL
Match: A0A0A0LK18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G118320 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.5e-27
Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 33  MAADAGLTIAAFPSIPIEEHKLEITKQMRRYEVAIAELNHLSSSRAVFQKNGNIFFRTTI 92
           MAAD GL+ AA PSI +EE KLEITKQMR  EVAIAELNHLSS+RAVFQKNGN+FFRTT+
Sbjct: 1   MAADGGLSTAASPSITMEEQKLEITKQMRSLEVAIAELNHLSSTRAVFQKNGNLFFRTTV 60

Query: 93  QKATTSEQKKLDAARAKLERLNS 116
           QKATTSEQKKLDAARAKLE LNS
Sbjct: 61  QKATTSEQKKLDAARAKLESLNS 83

[Close]

BLAST of CaUC06G115650 vs. ExPASy TrEMBL
Match: A0A1S3C672 (uncharacterized protein LOC103496917 OS=Cucumis melo OX=3656 GN=LOC103496917 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.3e-27
Identity = 68/83 (81.93%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 33  MAADAGLTIAAFPSIPIEEHKLEITKQMRRYEVAIAELNHLSSSRAVFQKNGNIFFRTTI 92
           MAAD G + AAFPSI  EE KLEITKQMR  EVAIAELNHLSS+RAV+QKNGN+FFRTT+
Sbjct: 1   MAADGGFSTAAFPSITKEEQKLEITKQMRSLEVAIAELNHLSSTRAVYQKNGNLFFRTTV 60

Query: 93  QKATTSEQKKLDAARAKLERLNS 116
           QKATTSEQKKLDAA+A+LERLNS
Sbjct: 61  QKATTSEQKKLDAAKARLERLNS 83

[Close]

BLAST of CaUC06G115650 vs. ExPASy TrEMBL
Match: A0A6J1HJ49 (uncharacterized protein LOC111464527 OS=Cucurbita moschata OX=3662 GN=LOC111464527 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.4e-25
Identity = 67/89 (75.28%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 27  NQSIPKMAADAGL-TIAAFPSIPIEEHKLEITKQMRRYEVAIAELNHLSSSRAVFQKNGN 86
           + +I KM    G  T AAFPS  IEE KLEITK+MR +EV+IAELNHLSS+RAVFQKNGN
Sbjct: 18  SDTIEKMPTGGGFGTAAAFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGN 77

Query: 87  IFFRTTIQKATTSEQKKLDAARAKLERLN 115
           IFFRTT+QKATTSEQKKLDAARAKL++LN
Sbjct: 78  IFFRTTVQKATTSEQKKLDAARAKLQKLN 106

[Close]

BLAST of CaUC06G115650 vs. ExPASy TrEMBL
Match: A0A6J1KIB7 (uncharacterized protein LOC111494702 OS=Cucurbita maxima OX=3661 GN=LOC111494702 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.0e-24
Identity = 65/84 (77.38%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 33  MAADAGL-TIAAFPSIPIEEHKLEITKQMRRYEVAIAELNHLSSSRAVFQKNGNIFFRTT 92
           MA   G  T + FPS  IEE KLEITK+MR +EV+IAELNHLSS+RAVFQKNGNIFFRTT
Sbjct: 1   MATGGGFGTASVFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFRTT 60

Query: 93  IQKATTSEQKKLDAARAKLERLNS 116
           +QKATTSEQKKLDAARAKL++LNS
Sbjct: 61  VQKATTSEQKKLDAARAKLQKLNS 84

[Close]

BLAST of CaUC06G115650 vs. ExPASy TrEMBL
Match: A0A6J1DN63 (uncharacterized protein LOC111022769 OS=Momordica charantia OX=3673 GN=LOC111022769 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.4e-22
Identity = 65/86 (75.58%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 33  MAADAG-LTIA--AFPSIPIEEHKLEITKQMRRYEVAIAELNHLSSSRAVFQKNGNIFFR 92
           MA   G +T+A  A PS  IEE KLEI K MR +EVAIAELNHLSS RAVFQKNGN+FFR
Sbjct: 1   MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFR 60

Query: 93  TTIQKATTSEQKKLDAARAKLERLNS 116
           TT+QKATTSEQKKLD ARAKLE+LNS
Sbjct: 61  TTVQKATTSEQKKLDMARAKLEKLNS 86

[Close]

BLAST of CaUC06G115650 vs. TAIR 10
Match: AT1G49245.1 (Prefoldin chaperone subunit family protein )

HSP 1 Score: 64.7 bits (156), Expect = 5.6e-11
Identity = 29/65 (44.62%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 51  EHKLEITKQMRRYEVAIAELNHLSSSRAVFQKNGNIFFRTTIQKATTSEQKKLDAARAKL 110
           + + E+ K+++R EV++ EL+ LSSSR+++QKNGN+FF T+ +KA  S QK+LD A++++
Sbjct: 8   DREFELEKEIKRQEVSLDELSSLSSSRSIYQKNGNLFFLTSAEKAKISAQKQLDYAKSEI 67

Query: 111 ERLNS 116
            ++ S
Sbjct: 68  NKIRS 72

The following BLAST results are available for this feature:

BLAST of CaUC06G115650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649062.1	3.0e-27	84.34	uncharacterized protein LOC105434577 [Cucumis sativus] >KGN61409.1 hypothetical ...	[more]
XP_008457178.1	6.8e-27	81.93	PREDICTED: uncharacterized protein LOC103496917 [Cucumis melo]	[more]
XP_038875459.1	1.2e-26	83.13	uncharacterized protein LOC120067907 [Benincasa hispida]	[more]
KAG7026105.1	1.3e-25	66.98	Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_022964526.1	4.9e-25	75.28	uncharacterized protein LOC111464527 [Cucurbita moschata]	[more]

BLAST of CaUC06G115650 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC06G115650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK18	1.5e-27	84.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G118320 PE=3 SV=1	[more]
A0A1S3C672	3.3e-27	81.93	uncharacterized protein LOC103496917 OS=Cucumis melo OX=3656 GN=LOC103496917 PE=...	[more]
A0A6J1HJ49	2.4e-25	75.28	uncharacterized protein LOC111464527 OS=Cucurbita moschata OX=3662 GN=LOC1114645...	[more]
A0A6J1KIB7	2.0e-24	77.38	uncharacterized protein LOC111494702 OS=Cucurbita maxima OX=3661 GN=LOC111494702...	[more]
A0A6J1DN63	5.4e-22	75.58	uncharacterized protein LOC111022769 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of CaUC06G115650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49245.1	5.6e-11	44.62	Prefoldin chaperone subunit family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002777	Prefoldin beta-like	PFAM	PF01920	Prefoldin_2	coord: 50..114 e-value: 1.5E-6 score: 28.1
IPR009053	Prefoldin	GENE3D	1.10.287.370		coord: 48..115 e-value: 2.3E-7 score: 32.5
None	No IPR available	SUPERFAMILY	46579	Prefoldin	coord: 55..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G115650.1	CaUC06G115650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0016272	prefoldin complex
molecular_function	GO:0051082	unfolded protein binding