CaUC06G115410 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G115410
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	serine-rich protein-related
Location	Ciama_Chr06: 12810723 .. 12811393 (-)
RNA-Seq Expression	CaUC06G115410
Synteny	CaUC06G115410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAACAAATTTACAAGTTTATGATAAGACGAAGATTAAACCTTTCAACAACCAAAGTCCATGGTATTTTCAATTTTGTATAATATAACTTCAAAACTTACCTCAAATAATTGGGATAGGCATTGACACGTGGCATAATCATACTGCTTCAGATCCACTCCCTGTTTATATAAAACCCGCAACCTGTAGTTTCCCCAATTTGCTTTGCAAAAATGGCATCCCACGGCAAAATGAGCATCAGCATCCCTTCCTCCGCCAAAAGCGCCGGCGAGGGGGACGGCGTGACGGCGCACTCCTGTTCATCGAAAGGCCAATGCCTCTGCTCACCCACGACTCATCCCGGTTCCTTCCGGTGCCGGCTTCACCGTTCGAATTCGTTGCCCTGGAGCAGGCAGTCCAAGTCCGCCGCCGCATCGGCCGACGCCTCTCACACCTCAGATCTCTCTCCAAAGTCAGTTGAATCTGCTTGATTTTTCACTCGCCCTTCAATTTCGATTTATCGGAAACAAATAATGAAATCCTCTGTAAATATTTATGTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTAATTAAATACCAGAATCGGTTTCTATCCGTCTGTTTGTTTCCATGGCGATCCTTTGATTTTAATTTCGGATAATTTCTCCCCTTTTTTTTTT

mRNA sequence

TGAACAAATTTACAAGTTTATGATAAGACGAAGATTAAACCTTTCAACAACCAAAGTCCATGGTATTTTCAATTTTGTATAATATAACTTCAAAACTTACCTCAAATAATTGGGATAGGCATTGACACGTGGCATAATCATACTGCTTCAGATCCACTCCCTGTTTATATAAAACCCGCAACCTGTAGTTTCCCCAATTTGCTTTGCAAAAATGGCATCCCACGGCAAAATGAGCATCAGCATCCCTTCCTCCGCCAAAAGCGCCGGCGAGGGGGACGGCGTGACGGCGCACTCCTGTTCATCGAAAGGCCAATGCCTCTGCTCACCCACGACTCATCCCGGTTCCTTCCGGTGCCGGCTTCACCGTTCGAATTCGTTGCCCTGGAGCAGGCAGTCCAAGTCCGCCGCCGCATCGGCCGACGCCTCTCACACCTCAGATCTCTCTCCAAAGTCAGTTGAATCTGCTTGATTTTTCACTCGCCCTTCAATTTCGATTTATCGGAAACAAATAATGAAATCCTCTGTAAATATTTATGTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTAATTAAATACCAGAATCGGTTTCTATCCGTCTGTTTGTTTCCATGGCGATCCTTTGATTTTAATTTCGGATAATTTCTCCCCTTTTTTTTTT

Coding sequence (CDS)

ATGGCATCCCACGGCAAAATGAGCATCAGCATCCCTTCCTCCGCCAAAAGCGCCGGCGAGGGGGACGGCGTGACGGCGCACTCCTGTTCATCGAAAGGCCAATGCCTCTGCTCACCCACGACTCATCCCGGTTCCTTCCGGTGCCGGCTTCACCGTTCGAATTCGTTGCCCTGGAGCAGGCAGTCCAAGTCCGCCGCCGCATCGGCCGACGCCTCTCACACCTCAGATCTCTCTCCAAAGTCAGTTGAATCTGCTTGA

Protein sequence

MASHGKMSISIPSSAKSAGEGDGVTAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVESA

Homology

[Close]

BLAST of CaUC06G115410 vs. NCBI nr
Match: KAA0046595.1 (hypothetical protein E6C27_scaffold114G001360 [Cucumis melo var. makuwa] >TYK00101.1 hypothetical protein E5676_scaffold596G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 144.1 bits (362), Expect = 5.7e-31
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGVTAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSR 60
          M S  KMSISIPS+AKSAG+GDGV  HSCSSK QCLCSPTTHPGSFRCRLHRSNSLPWSR
Sbjct: 1  MGSQPKMSISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSR 60

Query: 61 QSKSAAASADASHTSDLSPKSVESA 86
          QSKS AASADAS+TSDLSPKSVESA
Sbjct: 61 QSKSTAASADASNTSDLSPKSVESA 85

[Close]

BLAST of CaUC06G115410 vs. NCBI nr
Match: KAG6589904.1 (hypothetical protein SDJN03_15327, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023574.1 hypothetical protein SDJN02_14600, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.2 bits (352), Expect = 8.3e-30
Identity = 71/85 (83.53%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGVTAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSR 60
          M++HGK+ ISIPSSAKS G+GDGV AH+CSSKGQCLCSPTTHPGSFRCRLHRSNSLPW+R
Sbjct: 1  MSAHGKIRISIPSSAKSVGDGDGVAAHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTR 60

Query: 61 QSK-SAAASADASHTSDLSPKSVES 85
           SK +A++SADASHTSDLSPKSVES
Sbjct: 61 HSKTTASSSADASHTSDLSPKSVES 85

[Close]

BLAST of CaUC06G115410 vs. NCBI nr
Match: KAE8653119.1 (hypothetical protein Csa_020123 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 2.4e-29
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 6   KMSISIPSSAKSAGEGDGVT--AHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSK 65
           KMSI IPS+AKSAGEGDGV   +HSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSK
Sbjct: 41  KMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSK 100

Query: 66  SAAASADASHTSDLSPKSVESA 86
           S AASADAS+TSDLSPKSVESA
Sbjct: 101 STAASADASNTSDLSPKSVESA 122

[Close]

BLAST of CaUC06G115410 vs. NCBI nr
Match: KAF3961111.1 (hypothetical protein CMV_014232 [Castanea mollissima])

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-11
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGVTAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSR 60
          MASHG +++   S++  +GEG+ VT  S S KGQCLCSPTTH GSFRCR HRS+S  W +
Sbjct: 1  MASHGNLTV---STSPKSGEGEAVTTSSGSPKGQCLCSPTTHQGSFRCRFHRSSSSAWMK 60

Query: 61 QSKSAAASADASHTSDLSPKSVES 85
          +SK+  A+      +  SPKSVES
Sbjct: 61 RSKAMPANGS---VAAFSPKSVES 78

[Close]

BLAST of CaUC06G115410 vs. NCBI nr
Match: OUZ99929.1 (hypothetical protein BVC80_9069g38 [Macleaya cordata])

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-10
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGV-TAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPW- 60
          M SHG +++S+  S K  G G  V TA + S KGQCLCSPTTH GSFRCR HRS S  W 
Sbjct: 1  MTSHGTINVSL--SPKGNGNGQPVATASTNSPKGQCLCSPTTHNGSFRCRFHRSLSSTWR 60

Query: 61 SRQSKSAAASADASHTSDLSPKSVES 85
           ++SKS  A++ A+ T+ +SPKSVES
Sbjct: 61 MKRSKSMPANSTAAATTSISPKSVES 84

[Close]

BLAST of CaUC06G115410 vs. ExPASy TrEMBL
Match: A0A5D3BJV5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00570 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.8e-31
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGVTAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSR 60
          M S  KMSISIPS+AKSAG+GDGV  HSCSSK QCLCSPTTHPGSFRCRLHRSNSLPWSR
Sbjct: 1  MGSQPKMSISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSR 60

Query: 61 QSKSAAASADASHTSDLSPKSVESA 86
          QSKS AASADAS+TSDLSPKSVESA
Sbjct: 61 QSKSTAASADASNTSDLSPKSVESA 85

[Close]

BLAST of CaUC06G115410 vs. ExPASy TrEMBL
Match: A0A0A0LWJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369490 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.8e-30
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGVT--AHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPW 60
          M S  KMSI IPS+AKSAGEGDGV   +HSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPW
Sbjct: 1  MGSQAKMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPW 60

Query: 61 SRQSKSAAASADASHTSDLSPKSVESA 86
          SRQSKS AASADAS+TSDLSPKSVESA
Sbjct: 61 SRQSKSTAASADASNTSDLSPKSVESA 87

[Close]

BLAST of CaUC06G115410 vs. ExPASy TrEMBL
Match: A0A200PNZ0 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9069g38 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.1e-11
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGV-TAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPW- 60
          M SHG +++S+  S K  G G  V TA + S KGQCLCSPTTH GSFRCR HRS S  W 
Sbjct: 1  MTSHGTINVSL--SPKGNGNGQPVATASTNSPKGQCLCSPTTHNGSFRCRFHRSLSSTWR 60

Query: 61 SRQSKSAAASADASHTSDLSPKSVES 85
           ++SKS  A++ A+ T+ +SPKSVES
Sbjct: 61 MKRSKSMPANSTAAATTSISPKSVES 84

[Close]

BLAST of CaUC06G115410 vs. ExPASy TrEMBL
Match: A0A6A1UK22 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G006893 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-10
Identity = 50/85 (58.82%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGVTAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSR 60
          MAS G   +S+ ++ KS G+G+ VT  S S KGQCLCSPTTH GSFRCRLHRS+S  W +
Sbjct: 1  MASRGS-QLSVSTTPKS-GKGEAVTGASDSPKGQCLCSPTTHKGSFRCRLHRSSS-AWMK 60

Query: 61 QSKSAAASADASHTSDLSPKSVESA 86
          +SKS  AS   S  + LSPKSVES+
Sbjct: 61 RSKSMPAS---SSVAALSPKSVESS 79

[Close]

BLAST of CaUC06G115410 vs. ExPASy TrEMBL
Match: A0A5N6QHE2 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003263 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-10
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGVTAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSR 60
          MASHG +++   S++  +G+ + V   S S KGQCLCSPTTH GSFRCR HRS+S  W +
Sbjct: 1  MASHGSLTV---STSPKSGKEEPVGGASSSPKGQCLCSPTTHQGSFRCRFHRSSSSAWMK 60

Query: 61 QSKSAAASADASHTSDLSPKSVES 85
          +SKS  A    S  + +SPKS+ES
Sbjct: 61 RSKSVPAK--TSSVASMSPKSIES 79

[Close]

BLAST of CaUC06G115410 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 6.1e-07
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 5  GKMSISIPSSAKSAGE--GDGVTAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQS 64
          G M + I S   SA E    G++  +  +K  CLCSPTTHPGSFRCR+HRS SL  ++  
Sbjct: 12 GIMKVEIHSHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTK-- 71

Query: 65 KSAAASADASHTSDLSPKSVES 85
               S +A+   D  PK  +S
Sbjct: 72 -----SIEAASLLDSPPKPADS 86

[Close]

BLAST of CaUC06G115410 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 50.8 bits (120), Expect = 6.1e-07
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 5  GKMSISIPSSAKSAGE--GDGVTAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQS 64
          G M + I S   SA E    G++  +  +K  CLCSPTTHPGSFRCR+HRS SL  ++  
Sbjct: 12 GIMKVEIHSHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTK-- 71

Query: 65 KSAAASADASHTSDLSPKSVES 85
               S +A+   D  PK  +S
Sbjct: 72 -----SIEAASLLDSPPKPADS 86

[Close]

BLAST of CaUC06G115410 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 46.2 bits (108), Expect = 1.5e-05
Identity = 24/46 (52.17%), Postives = 28/46 (60.87%), Query Frame = 0


Query: 12 PSSAKSAGEGDGVTAHSCSS--KGQCLCSPTTHPGSFRCRLHRSNS 56
          P   +  G G G    S SS  +  CLC+PTTHPGSFRCR HR N+
Sbjct: 40 PRVRRGGGGGGGSVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRRNA 85

[Close]

BLAST of CaUC06G115410 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 3.4e-05
Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGVTAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSL 57
          M   G M      +A   G   G++  +  +K  C+CSPTTHPGSF+C+LHR+ SL
Sbjct: 1  MNDKGNMETEASIAAMGLG---GLSRQTSITKTICICSPTTHPGSFKCKLHRTPSL 53

[Close]

BLAST of CaUC06G115410 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related )

HSP 1 Score: 44.3 bits (103), Expect = 5.7e-05
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 30 SSKGQCLCSPTTHPGSFRCRLHRSNSL 57
          S++  CLCSPTTH GSFRCR HR +SL
Sbjct: 59 STRLNCLCSPTTHAGSFRCRYHRVDSL 85

The following BLAST results are available for this feature:

BLAST of CaUC06G115410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046595.1	5.7e-31	88.24	hypothetical protein E6C27_scaffold114G001360 [Cucumis melo var. makuwa] >TYK001...	[more]
KAG6589904.1	8.3e-30	83.53	hypothetical protein SDJN03_15327, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8653119.1	2.4e-29	90.24	hypothetical protein Csa_020123 [Cucumis sativus]	[more]
KAF3961111.1	1.7e-11	53.57	hypothetical protein CMV_014232 [Castanea mollissima]	[more]
OUZ99929.1	1.5e-10	55.81	hypothetical protein BVC80_9069g38 [Macleaya cordata]	[more]

BLAST of CaUC06G115410 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC06G115410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJV5	2.8e-31	88.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LWJ0	1.8e-30	87.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369490 PE=4 SV=1	[more]
A0A200PNZ0	7.1e-11	55.81	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9069g38 PE=4 SV=1	[more]
A0A6A1UK22	1.6e-10	58.82	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G006893 PE=4 SV=1	[more]
A0A5N6QHE2	1.6e-10	51.19	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003263 PE=4 SV=1	[more]

BLAST of CaUC06G115410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67910.1	6.1e-07	42.68	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	6.1e-07	42.68	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G13227.1	1.5e-05	52.17	serine-rich protein-related	[more]
AT1G24577.1	3.4e-05	42.86	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G55980.1	5.7e-05	70.37	serine-rich protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR33132:SF37	SERINE-RICH PROTEIN-LIKE PROTEIN	coord: 1..84
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G115410.1	CaUC06G115410.1	mRNA