CaUC06G114580 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC06G114580
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	DEAD-box ATP-dependent RNA helicase 51-like
Location	Ciama_Chr06: 10472860 .. 10476812 (-)
RNA-Seq Expression	CaUC06G114580
Synteny	CaUC06G114580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGTTTTCTTAAAAGATGAGAAACAGAAACTTATGAAACGGGACGTAAATGCACAATTCTTTCATCTTCCTCCCCTCCCACGTCTCTGCCTTTCTCAGATCTTCTAGTCCTCACTCTTCAATGGTGTCATATTTCTCTTTCTCCATTTTAACAACTCACATCGCCTTCAAACTTCTCTCTGTTTAGTCTGATGCAGCCATCACCATCGTTGTTTTTTCTATTTTCGCCACAGACGTCACCGTTTTCGTTTGATATTGCCACCGCCGTCGTCGTTGTTTGGGTATGATTCTGATATTGTCGCCACCACCCTTTACATTATGTCTCACCATGCACTGATGATTAAAACCCTAAGTTGAGTCTCATTCTCAGCAGCCCCCTCTCTCTCGACTCTCTCCTCATTGTCTTCTCTTCCAAGTTCCAAACTTCCAATCCAGCCGCCCTCGTCTTCCAAGTTCCAAGCAAAGCACAATCAAGGTATGTCCGGAACTCATACTTTTTGGATATCTTTCATTTAAAGAATTAAATATTAAGGAATTGTTCATAAAAAGTATACTTGATTGAAATCAAATTTAAAAAATTGTTAAAAAAACAGGGACAGGATTTGGGGAAATTTGCGGGGACGGAAAATGGAATAGCCGCCCCCTGAACCCTACATGACCTCGCTGCTTAAATCACCACTTGCTTAGTATCAACTTCTTCTCTTTGATTATGCCATGGTCTTACTAGTTCAACGGGTGCGGAAGAATCGGAACTTCAATATCCAATGGAAGGTGAAGAAGCAGAGGATGAATGAGGAGGATGGCGTGGAAGGGAAAGGTGAGAAGGATGAGGTGAAAGAGAACGAGGAAAAGAAGGTTAAGATTGGTGGATCAGGAATTATGAGTTCCATTACATTTCATTCGCTTGACTTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGGTAAGATTTCTTATTGGAAACTTTTAGTTTGCTGGACATAGATTTTCTATGCACAATCTACTATTACCGATAACTATTTAACTTGCACTTGAAGTATTATATTCTGATGTCGTGAATGGGGAATGGTAGAAAAAAAGTGACTAATGGTATTCTATGCTTTGATTAACCTTGATGTTAACTATTAATAGTTTGTTTTTAGTGGTTAAGCCGAACACTCAAATATGGGTTGGAGTTCTTTTAATGAATCTTGCGCTGGTTTTGTTTTCTTAAGTACAACAGCAAATGTGTATGTGGATTTCAACCTAACTAATACATGGACTTGGATATTCTTAAATTTTTAATTCCGCATTCGGGAAAGATATTCTTGGAGCTGCAAGGACTGGATCTGGGAAAACTCTTGCCTTTCTTGTACCAGGTGTGGAGCTACTACATCACATTCACATCTCCTTTACTCCTCGTAATGGAACTGGTGTTATTGTTATTTGCCCAACAAGCTTGCAATGCAGGCTGGTCCAATTTCCCCCCTTACCCGCATTTCTCTTTTAATAATTTAGTTGTTGATGACCCCTCATATTGATGTTGAAGGAGCTCACAATTTTATTTTTTTTTTCTTTTCTTTTTTCTTTCAAAAAATGATTTAGTTTGAACTTTGTATTAATAAAAAAGGAATTGTAAATACAAAGATACATTAAGGTTGACTGCATGGATACATTAAGGTTACAATTCACACTCAATGAAAGATACATTATCAATTCTAAAAGATTCATTCTTCTATATTCCTTCTTGAAGGGAAATTTATCTAAGAAAGTAATGGTCTTCTTCTCGCTTGTAACTCTGTAAAATTCCATGCGGACCTTCTTAGATACACTAAGGTTGACTGCATGGATATCCATGGAAAGCAGAAGCAGCAGAAGAGAACTTCTACCTTCTTTTCCTTCTTAGATACATTAAGGTCTAAGCTGTTGTAAGTTATATTCTTTGCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCTTTGATTTATTTTGTGTGTGTGAGTATACTTCTTGTAGTGTTTGTTTGGGTATGTGGGGCTCCTTTTTGCATTTGAGTTCTTTGTGAGGGTGGAAGTGTCCACTAATACTCCGTCTGGATTCATTAAAAGAGATCAATTCATTTCTGTTAGCATAAACCTTGGAAGGATAAGGAAGCAAAGAACTTCGAAATTTTCAATGACTACAGATCAGAACTGATAGCATTTGTATTTACTTCATAGTTGGCATCTCGCATCAACTTTCATTGTGGACTGGCCTTTTGAAAAATGCTTATTAAAATTACGGAGTTAAAGGCTACTAATGGTTTTACATTTCTTAAAGCCATTTAGCTTACTATGTAACATCTCATTGATTGATTCTCTATGCACATTTCAAAAGTCTCAGGATTGGATTGTGCAGTAGGATCCTCCAGATGAACCCAAGGTGCCTCTTACTCCTTAATTATGTTCACGTCTCATTTAGTATCCTTGTAATTCCTATATTATATTAAATAGGTAATTCTTATACTAATTGAGTTTAATGTTGTGTGAAATTATTGATTTCAGGAATATATTCACAGGGGAGGGGATGGGAAGGTAGCAAAGGAAATGCCCTGCTTTTCTTGATTCCTGAAGGGCTTCAATTTCTTGGCTATCTAAAGGTCTGGTATTCTCCCAAAAAATTAGATTGAATTGTATGCTGGGGTCAAATCATCTTCTTCACAGAGGTTGAGTATTCGAGGAAGAGCAACGAAGCTCAGAATTGAATACAGTTGTGCTAATTTCACGTTGCAGGAGAAACTGGTTGGCATTGAAGAAGTCGGCTAAGGATGGTTACAGATCCTACATATTAGCTTACAATTCACAGATATTTTCTTGATCTGCAGTGCAGGTACTGAGTTCTAAATCTCGACATGCATGCATGCGATATCATATAAAGCAAGATATTTGTTAGTATATGTTGATCAGTTACCATAGATAAAATGAATGTATGTGAACGAACAGGATACTGCTGCTTCATTCTGCTTTTACGACCCTCCAAAGGTGAACCTTAACATTCACAAGCAGTGCCTCCAATTTGTAAGATACCACCTCAACTTCAAATTTCTTTGTTTAGGAGGATAGGAAATTTTTACATTTATTTCCTCATCTTCCTTAAATAGTCTGGAAACCAGATCCCATTTTGTTTTGTATCCTAATATATTCATACCCTATTTAATCCTCTTTTTTCTTCTCAAAATTATGTCCATATTCACATTTTAT

mRNA sequence

TCGTTTTCTTAAAAGATGAGAAACAGAAACTTATGAAACGGGACGTAAATGCACAATTCTTTCATCTTCCTCCCCTCCCACGTCTCTGCCTTTCTCAGATCTTCTAGTCCTCACTCTTCAATGGTGTCATATTTCTCTTTCTCCATTTTAACAACTCACATCGCCTTCAAACTTCTCTCTGTTTAGTCTGATGCAGCCATCACCATCGTTGTTTTTTCTATTTTCGCCACAGACGTCACCGTTTTCGTTTGATATTGCCACCGCCGTCGTCGTTGTTTGGCCCCCTCTCTCTCGACTCTCTCCTCATTGTCTTCTCTTCCAAGTTCCAAACTTCCAATCCAGCCGCCCTCGTCTTCCAAGTTCCAAGCAAAGCACAATCAAGGTGAAGAAGCAGAGGATGAATGAGGAGGATGGCGTGGAAGGGAAAGGTGAGAAGGATGAGGTGAAAGAGAACGAGGAAAAGAAGGTTAAGATTGGTGGATCAGGAATTATGAGTTCCATTACATTTCATTCGCTTGACTTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGATATTCTTGGAGCTGCAAGGACTGGATCTGGGAAAACTCTTGCCTTTCTTGTACCAGGGGAGGGGATGGGAAGGTAGCAAAGGAAATGCCCTGCTTTTCTTGATTCCTGAAGGGCTTCAATTTCTTGGCTATCTAAAGGTCTGGAGAAACTGGTTGGCATTGAAGAAGTCGGCTAAGGATGGTTACAGATCCTACATATTAGCTTACAATTCACAGATATTTTCTTGATCTGCAGTGCAGGATACTGCTGCTTCATTCTGCTTTTACGACCCTCCAAAGGTGAACCTTAACATTCACAAGCAGTGCCTCCAATTTGTAAGATACCACCTCAACTTCAAATTTCTTTGTTTAGGAGGATAGGAAATTTTTACATTTATTTCCTCATCTTCCTTAAATAGTCTGGAAACCAGATCCCATTTTGTTTTGTATCCTAATATATTCATACCCTATTTAATCCTCTTTTTTCTTCTCAAAATTATGTCCATATTCACATTTTAT

Coding sequence (CDS)

ATGCAGCCATCACCATCGTTGTTTTTTCTATTTTCGCCACAGACGTCACCGTTTTCGTTTGATATTGCCACCGCCGTCGTCGTTGTTTGGCCCCCTCTCTCTCGACTCTCTCCTCATTGTCTTCTCTTCCAAGTTCCAAACTTCCAATCCAGCCGCCCTCGTCTTCCAAGTTCCAAGCAAAGCACAATCAAGGTGAAGAAGCAGAGGATGAATGAGGAGGATGGCGTGGAAGGGAAAGGTGAGAAGGATGAGGTGAAAGAGAACGAGGAAAAGAAGGTTAAGATTGGTGGATCAGGAATTATGAGTTCCATTACATTTCATTCGCTTGACTTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGATATTCTTGGAGCTGCAAGGACTGGATCTGGGAAAACTCTTGCCTTTCTTGTACCAGGGGAGGGGATGGGAAGGTAGCAAAGGAAATGCCCTGCTTTTCTTGATTCCTGAAGGGCTTCAATTTCTTGGCTATCTAAAGGTCTGGAGAAACTGGTTGGCATTGAAGAAGTCGGCTAAGGATGGTTACAGATCCTACATATTAGCTTACAATTCACAGATATTTTCTTGA

Protein sequence

MQPSPSLFFLFSPQTSPFSFDIATAVVVVWPPLSRLSPHCLLFQVPNFQSSRPRLPSSKQSTIKVKKQRMNEEDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGSKGNALLFLIPEGLQFLGYLKVWRNWLALKKSAKDGYRSYILAYNSQIFS

Homology

[Close]

BLAST of CaUC06G114580 vs. NCBI nr
Match: XP_038895340.1 (DEAD-box ATP-dependent RNA helicase 51-like [Benincasa hispida])

HSP 1 Score: 98.2 bits (243), Expect = 8.6e-17
Identity = 58/97 (59.79%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 73  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFL 132
           EDG+EGK E DE KENEEKKVK GGSGIM++++F SLDLSEKTLRAIKDMGFEHMTQI  
Sbjct: 98  EDGMEGKVENDEEKENEEKKVKTGGSGIMTTVSFDSLDLSEKTLRAIKDMGFEHMTQI-- 157

Query: 133 ELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP 166
                   K +P    G+   G+     G  L FLIP
Sbjct: 158 ------QAKAIPPSLVGKDILGAARTGSGKTLAFLIP 186

[Close]

BLAST of CaUC06G114580 vs. NCBI nr
Match: XP_023520092.1 (DEAD-box ATP-dependent RNA helicase 51-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-15
Identity = 55/97 (56.70%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 73  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFL 132
           EDGV+GK EKDE K NE+KKVK GGSGIMS++ F SL+LSEKTLRAIKDMGF+HMTQI  
Sbjct: 96  EDGVDGKVEKDEEKVNEKKKVKTGGSGIMSTVAFDSLELSEKTLRAIKDMGFQHMTQI-- 155

Query: 133 ELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP 166
                   + +P    G+   G+     G  L FLIP
Sbjct: 156 ------QARAIPPFLTGKDVLGAARTGSGKTLAFLIP 184

[Close]

BLAST of CaUC06G114580 vs. NCBI nr
Match: KAG6584379.1 (DEAD-box ATP-dependent RNA helicase 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-15
Identity = 54/97 (55.67%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 73  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFL 132
           EDGV+GK EKDE K NE+KKVK GGSGIMS+++F SL+LSEKTLRAIKD+GF+HMTQI  
Sbjct: 96  EDGVDGKVEKDEEKVNEKKKVKTGGSGIMSTVSFDSLELSEKTLRAIKDIGFQHMTQI-- 155

Query: 133 ELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP 166
                   + +P    G+   G+     G  L FLIP
Sbjct: 156 ------QARAIPPFLTGKDVLGAARTGSGKTLAFLIP 184

[Close]

BLAST of CaUC06G114580 vs. NCBI nr
Match: XP_022924139.1 (DEAD-box ATP-dependent RNA helicase 51-like [Cucurbita moschata])

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-15
Identity = 54/97 (55.67%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 73  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFL 132
           EDGV+GK EKDE K NE+KKVK GGSGIMS+++F SL+LSEKTLRAIKD+GF+HMTQI  
Sbjct: 96  EDGVDGKVEKDEEKVNEKKKVKTGGSGIMSTVSFDSLELSEKTLRAIKDIGFQHMTQI-- 155

Query: 133 ELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP 166
                   + +P    G+   G+     G  L FLIP
Sbjct: 156 ------QARAIPPFLTGKDVLGAARTGSGKTLAFLIP 184

[Close]

BLAST of CaUC06G114580 vs. NCBI nr
Match: KAG7019966.1 (DEAD-box ATP-dependent RNA helicase 27 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-15
Identity = 54/97 (55.67%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 73  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFL 132
           EDGV+GK EKDE K NE+KKVK GGSGIMS+++F SL+LSEKTLRAIKD+GF+HMTQI  
Sbjct: 96  EDGVDGKVEKDEEKVNEKKKVKTGGSGIMSTVSFDSLELSEKTLRAIKDIGFQHMTQI-- 155

Query: 133 ELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP 166
                   + +P    G+   G+     G  L FLIP
Sbjct: 156 ------QARAIPPFLTGKDVLGAARTGSGKTLAFLIP 184

[Close]

BLAST of CaUC06G114580 vs. ExPASy Swiss-Prot
Match: Q9LIH9 (DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis thaliana OX=3702 GN=RH51 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-09
Identity = 49/115 (42.61%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 57  SSKQSTIKVKKQRMNEEDGVEGKGEKDEVKEN--EEKKVKIGGSGIMSSITFHSLDLSEK 116
           + K+S  KVKK R      +E + EK E  E+  +EK + I G GIM+++TF SLDLSE+
Sbjct: 44  TQKKSEKKVKKVR----GKIEEEEEKVEAMEDGEDEKNIVIVGKGIMTNVTFDSLDLSEQ 103

Query: 117 TLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP 166
           T  AIK+MGF++MTQI         G + P L +G+   G+     G  L FLIP
Sbjct: 104 TSIAIKEMGFQYMTQI-------QAGSIQPLL-EGKDVLGAARTGSGKTLAFLIP 146

[Close]

BLAST of CaUC06G114580 vs. ExPASy Swiss-Prot
Match: Q9SB89 (DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis thaliana OX=3702 GN=RH27 PE=2 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-07
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 66  KKQRMNEEDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFE 125
           KK++  +    E K E++EV++ EE+K K+  + IM++ TF SL LS+ T ++IK+MGF 
Sbjct: 117 KKKKKKQRKDTEAKSEEEEVEDKEEEK-KLEETSIMTNKTFESLSLSDNTYKSIKEMGFA 176

Query: 126 HMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP 166
            MTQI          K +P L  G    G+     G  L FLIP
Sbjct: 177 RMTQI--------QAKAIPPLMMGEDVLGAARTGSGKTLAFLIP 211

[Close]

BLAST of CaUC06G114580 vs. ExPASy Swiss-Prot
Match: Q84T03 (DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0802700 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.3e-06
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 0


Query: 72  EEDGVEGKGEKDEVKENEEKKVK--IGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQ 131
           EE+  E K +K+  KE + KK K   GGSGI++++ F  L +SE T RAI++M + ++TQ
Sbjct: 62  EEEKKEKKQKKEMSKEKKRKKEKGNEGGSGILTNMLFSELGVSEPTARAIREMNYTYLTQ 121

Query: 132 IFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP 166
           I          + +P L  G+   G+     G  L FLIP
Sbjct: 122 I--------QARSIPHLLNGKDVMGAAKTGSGKTLAFLIP 153

[Close]

BLAST of CaUC06G114580 vs. ExPASy TrEMBL
Match: A0A6J1E8A7 (DEAD-box ATP-dependent RNA helicase 51-like OS=Cucurbita moschata OX=3662 GN=LOC111431667 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-15
Identity = 54/97 (55.67%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 73  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFL 132
           EDGV+GK EKDE K NE+KKVK GGSGIMS+++F SL+LSEKTLRAIKD+GF+HMTQI  
Sbjct: 96  EDGVDGKVEKDEEKVNEKKKVKTGGSGIMSTVSFDSLELSEKTLRAIKDIGFQHMTQI-- 155

Query: 133 ELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP 166
                   + +P    G+   G+     G  L FLIP
Sbjct: 156 ------QARAIPPFLTGKDVLGAARTGSGKTLAFLIP 184

[Close]

BLAST of CaUC06G114580 vs. ExPASy TrEMBL
Match: A0A6J1KNF7 (DEAD-box ATP-dependent RNA helicase 51 OS=Cucurbita maxima OX=3661 GN=LOC111495085 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 56/97 (57.73%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 73  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFL 132
           ED V+GK EKDE K NE+KKVK GGSGIMS+++F SL+LSEKTLRAIKD+GF+HMTQI  
Sbjct: 96  EDDVDGKVEKDEEKVNEKKKVKTGGSGIMSTVSFDSLELSEKTLRAIKDIGFQHMTQI-- 155

Query: 133 ELQGLDLGKLLPFL----YQGRGWEGSKGNALLFLIP 166
                    + PFL      G    GS G  L FLIP
Sbjct: 156 -----QARSIPPFLTGKDVLGAARTGS-GKTLAFLIP 184

[Close]

BLAST of CaUC06G114580 vs. ExPASy TrEMBL
Match: A0A5D3BGT0 (DEAD-box ATP-dependent RNA helicase 51 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001750 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-14
Identity = 53/97 (54.64%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 73  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFL 132
           EDGVE +GE+DE  E+++ KVK GGSGIMSS++F SL+LSEKTLRAIKDMGFEHMTQI  
Sbjct: 98  EDGVEAEGEEDEEDEDKKNKVKTGGSGIMSSVSFDSLELSEKTLRAIKDMGFEHMTQI-- 157

Query: 133 ELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP 166
                   + +P    G+   G+     G  L FLIP
Sbjct: 158 ------QARAIPPSLIGKDILGAARTGSGKTLAFLIP 186

[Close]

BLAST of CaUC06G114580 vs. ExPASy TrEMBL
Match: A0A1S3CRK6 (DEAD-box ATP-dependent RNA helicase 51-like OS=Cucumis melo OX=3656 GN=LOC103503911 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-14
Identity = 59/131 (45.04%), Postives = 78/131 (59.54%), Query Frame = 0


Query: 45  VPNFQSSRPRLPSSKQSTIKVKKQRMNE------EDGVEGKGEKDEVKENEEKKVKIGGS 104
           VP  ++       +K+   K KK+   +      E+GVE + EKDE K+N++KKVK GGS
Sbjct: 64  VPEEKAKEEEKMKNKKRKTKTKKEGHEDTGDGRVEEGVEVQVEKDEEKKNQKKKVKTGGS 123

Query: 105 GIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS--- 164
           GIMS+++F SL+LSEKTLRAIKDMGFEHMTQI          + +P    G+   G+   
Sbjct: 124 GIMSTVSFDSLELSEKTLRAIKDMGFEHMTQI--------QDRAIPPFLAGKDVLGAART 183

Query: 165 -KGNALLFLIP 166
             G  L FLIP
Sbjct: 184 GSGKTLAFLIP 186

[Close]

BLAST of CaUC06G114580 vs. ExPASy TrEMBL
Match: A0A1S3C1Z8 (DEAD-box ATP-dependent RNA helicase 51 OS=Cucumis melo OX=3656 GN=LOC103495709 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-14
Identity = 53/97 (54.64%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 73  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFL 132
           EDGVE +GE+DE  E+++ KVK GGSGIMSS++F SL+LSEKTLRAIKDMGFEHMTQI  
Sbjct: 98  EDGVEAEGEEDEEDEDKKNKVKTGGSGIMSSVSFDSLELSEKTLRAIKDMGFEHMTQI-- 157

Query: 133 ELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP 166
                   + +P    G+   G+     G  L FLIP
Sbjct: 158 ------QARAIPPSLIGKDILGAARTGSGKTLAFLIP 186

[Close]

BLAST of CaUC06G114580 vs. TAIR 10
Match: AT3G18600.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-10
Identity = 49/115 (42.61%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 57  SSKQSTIKVKKQRMNEEDGVEGKGEKDEVKEN--EEKKVKIGGSGIMSSITFHSLDLSEK 116
           + K+S  KVKK R      +E + EK E  E+  +EK + I G GIM+++TF SLDLSE+
Sbjct: 44  TQKKSEKKVKKVR----GKIEEEEEKVEAMEDGEDEKNIVIVGKGIMTNVTFDSLDLSEQ 103

Query: 117 TLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP 166
           T  AIK+MGF++MTQI         G + P L +G+   G+     G  L FLIP
Sbjct: 104 TSIAIKEMGFQYMTQI-------QAGSIQPLL-EGKDVLGAARTGSGKTLAFLIP 146

[Close]

BLAST of CaUC06G114580 vs. TAIR 10
Match: AT5G65900.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-08
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 66  KKQRMNEEDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFE 125
           KK++  +    E K E++EV++ EE+K K+  + IM++ TF SL LS+ T ++IK+MGF 
Sbjct: 117 KKKKKKQRKDTEAKSEEEEVEDKEEEK-KLEETSIMTNKTFESLSLSDNTYKSIKEMGFA 176

Query: 126 HMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP 166
            MTQI          K +P L  G    G+     G  L FLIP
Sbjct: 177 RMTQI--------QAKAIPPLMMGEDVLGAARTGSGKTLAFLIP 211

The following BLAST results are available for this feature:

BLAST of CaUC06G114580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895340.1	8.6e-17	59.79	DEAD-box ATP-dependent RNA helicase 51-like [Benincasa hispida]	[more]
XP_023520092.1	1.6e-15	56.70	DEAD-box ATP-dependent RNA helicase 51-like [Cucurbita pepo subsp. pepo]	[more]
KAG6584379.1	3.6e-15	55.67	DEAD-box ATP-dependent RNA helicase 27, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022924139.1	3.6e-15	55.67	DEAD-box ATP-dependent RNA helicase 51-like [Cucurbita moschata]	[more]
KAG7019966.1	3.6e-15	55.67	DEAD-box ATP-dependent RNA helicase 27 [Cucurbita argyrosperma subsp. argyrosper...	[more]

BLAST of CaUC06G114580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIH9	3.1e-09	42.61	DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis thaliana OX=3702 GN=RH51 P...	[more]
Q9SB89	1.7e-07	38.46	DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis thaliana OX=3702 GN=RH27 P...	[more]
Q84T03	9.3e-06	37.00	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]

BLAST of CaUC06G114580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E8A7	1.8e-15	55.67	DEAD-box ATP-dependent RNA helicase 51-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1KNF7	1.1e-14	57.73	DEAD-box ATP-dependent RNA helicase 51 OS=Cucurbita maxima OX=3661 GN=LOC1114950...	[more]
A0A5D3BGT0	1.9e-14	54.64	DEAD-box ATP-dependent RNA helicase 51 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3CRK6	1.9e-14	45.04	DEAD-box ATP-dependent RNA helicase 51-like OS=Cucumis melo OX=3656 GN=LOC103503...	[more]
A0A1S3C1Z8	1.9e-14	54.64	DEAD-box ATP-dependent RNA helicase 51 OS=Cucumis melo OX=3656 GN=LOC103495709 P...	[more]

BLAST of CaUC06G114580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18600.1	2.2e-10	42.61	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT5G65900.1	1.2e-08	38.46	DEA(D/H)-box RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..89
None	No IPR available	PANTHER	PTHR24031:SF630	DEAD-BOX ATP-DEPENDENT RNA HELICASE 51	coord: 48..130
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 48..130
IPR014014	RNA helicase, DEAD-box type, Q motif	PROSITE	PS51195	Q_MOTIF	coord: 104..132 score: 8.793959

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC06G114580.1	CaUC06G114580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0003724	RNA helicase activity